Rh2BG624000

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011602
Physical Location & Seq
Forward (+)
84580272 .. 84594351
14080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG624000.1

Sequence Viewer

Length: 1476 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTCTGAGGACCTCTTTCCACCAGCATGCATCAAGTTTCAGGATCACTTCAGATGTCAGATCCATGAAAGAGAATGATGACGATGAGGTTGAATTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGCATTCAAACGTCACTCTCCAGTTGTAACAAAGAGGAAGATGGTCATGAAGGTAAGACTAAGAGGGTAGTTGATGTTACAAAGCTAGGAGCCCTGGAACGTCGTGTGTTCATTGATTATCTTCTCAAGGACATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGACAGAGTGGGATTGCAATTACCGACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCGCTCCCAACACTATGGAACACGCTCAAAAGCTTTCTCTCTGTGATGACACAGATATTTCGGTGCAAGTCTCAAGCATACAAACTAGAAATTCTAAAAGAAGTCAGTGGCATCATCAAGCCTTCAAGGAAGAACAATGATCTAGTTAGAGAACTCAGCTTTCCAGTACAAGGCTCAAAGGAATTGTATTTTCCTACTCACTTCCCACAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTATTGGAGAAATCCAAGATATAATCTGGGGCGATTGGCAATTACTGCTGCATCTTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAGAATAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATGGGAATCGGTAACTGTTCCTCTGTTTTACCATTTGTCACTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCACGGGCATATTCTTTTTCACAGGTGATCATTGAACTTCCGTATATTTTACTTCAGGCAGTTATCTTTTCGACCATTACATATCCAACCATTGGTTTTCACTGGTCACTTTACAAAGTATTCTGGTATGTGTACGCTATGTTTTGTACACTGCTCTACTTCACTTACTTCGGTATATTGGTTGCTTCTGCGACCCCAACTTTCCAAGTGGCTTCAGTATTAGCAAGTTTCTGCTACACCATGTTCAATCTGTTCTCGGGATTCCTAATACCTCAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTGCCCTTTATCGTGGTCCTTAAAAGGTATTCTCATTTCACAGTACGGAGATCTAAACAAGGAAATTGTACTCCGCGGGGAAGAAAAGACCGTCAGTTCCTTCTTAGAAAGCATCTATGGATACAACTATGATGATCTAGGAATTGTAGGAACTGTTCTTCTTGCATATCCATTAGTTTTCGCATTTGCGTTTGCACTTGCTACTGAAAAACTCAACTTTCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

491

Amino Acids

56.75

Weight (kDa)

8.77

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 216 - 430 1.4e-56 ABC-2 type transporter
ABC2_membrane_3 PF12698 262 - 461 8.1e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 638, 1022
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 900
AccII CGCG 1 cut(s) 1320
AciI CCGC 3 cut(s) 428, 1318, 1320
AclWI GGATC 3 cut(s) 77, 81, 823
AcsI RAATTY 2 cut(s) 385, 516
AcuI CTGAAG 4 cut(s) 60, 787, 968, 1128
AfaI GTAC 7 cut(s) 375, 594, 926, 1064, 1078, 1289, 1314
AfiI CCNNNNNNNGG 3 cut(s) 596, 638, 1022
AgsI TTSAA 8 cut(s) 119, 140, 158, 167, 419, 552, 965, 1177
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 3 cut(s) 244, 459, 585
AluI AGCT 3 cut(s) 244, 459, 585
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 2 cut(s) 501, 668
AlwI GGATC 3 cut(s) 77, 81, 823
Ama87I CYCGRG 1 cut(s) 1186
ApeKI GCWGC 3 cut(s) 11, 131, 731
ApoI RAATTY 2 cut(s) 385, 516
Asp700I GAANNNNTTC 2 cut(s) 162, 414
AspLEI GCGC 1 cut(s) 891
AspS9I GGNCC 2 cut(s) 36, 1260
AsuHPI GGTGA 2 cut(s) 800, 967
AvaI CYCGRG 1 cut(s) 1186
AvaII GGWCC 2 cut(s) 36, 1260
BanII GRGCYC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 757
BbvI GCAGC 2 cut(s) 118, 718
BccI CCATC 2 cut(s) 194, 636
BcgI CGANNNNNNTGC 2 cut(s) 829, 863
BciT130I CCWGG 1 cut(s) 254
BciVI GTATCC 1 cut(s) 1358
BclI TGATCA 1 cut(s) 957
BcoDI GTCTC 2 cut(s) 501, 668
BfaI CTAG 5 cut(s) 245, 512, 569, 812, 1382
BfmI CTRYAG 1 cut(s) 12
BfuI GTATCC 1 cut(s) 1358
BglII AGATCT 1 cut(s) 1294
BisI GCNGC 4 cut(s) 12, 132, 428, 732
BlsI GCNGC 4 cut(s) 13, 133, 429, 733
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 2 cut(s) 36, 1260
BmeT110I CYCGRG 1 cut(s) 1186
BmgT120I GGNCC 2 cut(s) 36, 1260
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 4 cut(s) 65, 546, 743, 1365
BpmI CTGGAG 1 cut(s) 163
BpuEI CTTGAG 2 cut(s) 269, 483
BsaJI CCNNGG 2 cut(s) 252, 1318
Bsc4I CCNNNNNNNGG 3 cut(s) 596, 638, 1022
Bse1I ACTGG 4 cut(s) 180, 590, 1037, 1244
Bse3DI GCAATG 1 cut(s) 898
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 252, 1318
BseGI GGATG 1 cut(s) 647
BseLI CCNNNNNNNGG 3 cut(s) 596, 638, 1022
BseMI GCAATG 1 cut(s) 898
BseMII CTCAG 3 cut(s) 23, 595, 876
BseNI ACTGG 4 cut(s) 180, 590, 1037, 1244
BseRI GAGGAG 1 cut(s) 919
BseXI GCAGC 2 cut(s) 118, 718
Bsh1236I CGCG 1 cut(s) 1320
BsiHKAI GWGCWC 1 cut(s) 757
BsiHKCI CYCGRG 1 cut(s) 1186
BslI CCNNNNNNNGG 3 cut(s) 596, 638, 1022
BsmAI GTCTC 2 cut(s) 501, 668
BsmI GAATGC 2 cut(s) 162, 807
BsoBI CYCGRG 1 cut(s) 1186
Bsp1286I GDGCHC 2 cut(s) 253, 757
Bsp1407I TGTACA 1 cut(s) 1076
Bsp143I GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
BspACI CCGC 3 cut(s) 428, 1318, 1320
BspCNI CTCAG 3 cut(s) 24, 594, 877
BspFNI CGCG 1 cut(s) 1320
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 3 cut(s) 77, 81, 823
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 898
BsrGI TGTACA 1 cut(s) 1076
BsrI ACTGG 4 cut(s) 180, 590, 1037, 1244
BssECI CCNNGG 2 cut(s) 252, 1318
BssMI GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
BssNAI GTATAC 1 cut(s) 901
Bst1107I GTATAC 1 cut(s) 901
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 5 cut(s) 367, 857, 1287, 1336, 1399
BstAPI GCANNNNNTGC 1 cut(s) 728
BstAUI TGTACA 1 cut(s) 1076
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 5 cut(s) 32, 219, 581, 885, 1348
BstDSI CCRYGG 1 cut(s) 1318
BstF5I GGATG 1 cut(s) 647
BstFNI CGCG 1 cut(s) 1320
BstHHI GCGC 1 cut(s) 891
BstKTI GATC 7 cut(s) 72, 89, 568, 818, 960, 1297, 1381
BstMAI GTCTC 2 cut(s) 501, 668
BstMBI GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 56, 663
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 1 cut(s) 12
BstUI CGCG 1 cut(s) 1320
BstV1I GCAGC 2 cut(s) 118, 718
BstX2I RGATCY 2 cut(s) 86, 1294
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 2 cut(s) 86, 1294
BstZ17I GTATAC 1 cut(s) 901
BsuI GTATCC 1 cut(s) 1358
BtgI CCRYGG 1 cut(s) 1318
BtsCI GGATG 1 cut(s) 647
BtsI GCAGTG 2 cut(s) 131, 1079
BtsIMutI CAGTG 4 cut(s) 131, 538, 1030, 1079
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 1 cut(s) 205
CfoI GCGC 1 cut(s) 891
Cfr13I GGNCC 2 cut(s) 36, 1260
Cfr42I CCGCGG 1 cut(s) 1321
Csp6I GTAC 7 cut(s) 374, 593, 925, 1063, 1077, 1288, 1313
CviAII CATG 6 cut(s) 53, 91, 206, 660, 841, 1171
CviQI GTAC 7 cut(s) 374, 593, 925, 1063, 1077, 1288, 1313
DdeI CTNAG 5 cut(s) 32, 219, 581, 885, 1348
DpnI GATC 7 cut(s) 71, 88, 567, 817, 959, 1296, 1380
DpnII GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
DraI TTTAAA 1 cut(s) 655
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 36, 1260
Eco57I CTGAAG 4 cut(s) 60, 787, 968, 1128
Eco88I CYCGRG 1 cut(s) 1186
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 252
EcoT22I ATGCAT 2 cut(s) 58, 842
EcoT38I GRGCYC 1 cut(s) 253
FaeI CATG 6 cut(s) 56, 94, 209, 663, 844, 1174
FatI CATG 6 cut(s) 52, 90, 205, 659, 840, 1170
FauI CCCGC 1 cut(s) 1313
FbaI TGATCA 1 cut(s) 957
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 4 cut(s) 12, 132, 428, 732
FokI GGATG 1 cut(s) 654
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 4 cut(s) 12, 132, 428, 732
FspBI CTAG 5 cut(s) 245, 512, 569, 812, 1382
GlaI GCGC 1 cut(s) 890
GluI GCNGC 4 cut(s) 12, 132, 428, 732
GsuI CTGGAG 1 cut(s) 163
HhaI GCGC 1 cut(s) 891
Hin1II CATG 6 cut(s) 56, 94, 209, 663, 844, 1174
Hin6I GCGC 1 cut(s) 889
HinP1I GCGC 1 cut(s) 889
HindIII AAGCTT 1 cut(s) 457
HinfI GANTC 2 cut(s) 846, 1191
HphI GGTGA 2 cut(s) 800, 967
Hpy166II GTNNAC 4 cut(s) 791, 901, 1063, 1079
Hpy188I TCNGA 5 cut(s) 33, 79, 86, 886, 1467
Hpy188III TCNNGA 4 cut(s) 67, 206, 667, 1188
Hpy8I GTNNAC 4 cut(s) 791, 901, 1063, 1079
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 4 cut(s) 203, 290, 558, 1354
HpyCH4III ACNGT 5 cut(s) 367, 857, 1287, 1336, 1399
HpyCH4IV ACGT 2 cut(s) 170, 259
HpyCH4V TGCA 9 cut(s) 14, 56, 124, 355, 492, 734, 840, 1409, 1439
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 5 cut(s) 32, 219, 581, 885, 1348
HpySE526I ACGT 2 cut(s) 170, 259
Hsp92II CATG 6 cut(s) 56, 94, 209, 663, 844, 1174
HspAI GCGC 1 cut(s) 889
Ksp22I TGATCA 1 cut(s) 957
KspI CCGCGG 1 cut(s) 1321
Kzo9I GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
LmnI GCTCC 4 cut(s) 248, 435, 646, 752
Lsp1109I GCAGC 2 cut(s) 118, 718
LweI GCATC 4 cut(s) 65, 546, 743, 1365
MaeI CTAG 5 cut(s) 245, 512, 569, 812, 1382
MaeII ACGT 2 cut(s) 170, 259
MaeIII GTNAC 6 cut(s) 171, 185, 235, 851, 877, 1035
MalI GATC 7 cut(s) 71, 88, 567, 817, 959, 1296, 1380
MbiI CCGCTC 1 cut(s) 430
MboI GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
MboII GAAGA 8 cut(s) 36, 209, 272, 568, 729, 793, 1337, 1394
MflI RGATCY 2 cut(s) 86, 1294
MhlI GDGCHC 2 cut(s) 253, 757
MluCI AATT 9 cut(s) 119, 356, 385, 516, 608, 650, 723, 1308, 1386
MmeI TCCRAC 1 cut(s) 1040
Mph1103I ATGCAT 2 cut(s) 58, 842
MroXI GAANNNNTTC 2 cut(s) 162, 414
MseI TTAA 2 cut(s) 654, 1265
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 1320
MspR9I CCNGG 1 cut(s) 254
Mva1269I GAATGC 2 cut(s) 162, 807
MvaI CCWGG 1 cut(s) 254
MvnI CGCG 1 cut(s) 1320
MwoI GCNNNNNNNGC 1 cut(s) 728
NdeII GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
NlaIII CATG 6 cut(s) 56, 94, 209, 663, 844, 1174
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 3 cut(s) 171, 877, 1035
NsiI ATGCAT 2 cut(s) 58, 842
NspI RCATGY 2 cut(s) 56, 663
PaeI GCATGC 1 cut(s) 56
PagI TCATGA 1 cut(s) 205
PctI GAATGC 2 cut(s) 162, 807
PdmI GAANNNNTTC 2 cut(s) 162, 414
PfeI GAWTC 2 cut(s) 846, 1191
PflMI CCANNNNNTGG 2 cut(s) 638, 1022
PkrI GCNGC 4 cut(s) 13, 133, 429, 733
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 36, 1260
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 1383, 1415
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 86, 1294
RsaI GTAC 7 cut(s) 375, 594, 926, 1064, 1078, 1289, 1314
RsaNI GTAC 7 cut(s) 374, 593, 925, 1063, 1077, 1288, 1313
RseI CAYNNNNRTG 1 cut(s) 51
SacII CCGCGG 1 cut(s) 1321
SaqAI TTAA 2 cut(s) 654, 1265
SatI GCNGC 4 cut(s) 12, 132, 428, 732
Sau3AI GATC 7 cut(s) 69, 86, 565, 815, 957, 1294, 1378
Sau96I GGNCC 2 cut(s) 36, 1260
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 2 cut(s) 253, 757
SfaNI GCATC 4 cut(s) 65, 546, 743, 1365
SfcI CTRYAG 1 cut(s) 12
Sfr303I CCGCGG 1 cut(s) 1321
SgrBI CCGCGG 1 cut(s) 1321
SinI GGWCC 2 cut(s) 36, 1260
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 284, 498
SmoI CTYRAG 2 cut(s) 284, 498
SphI GCATGC 1 cut(s) 56
Sse9I AATT 9 cut(s) 119, 356, 385, 516, 608, 650, 723, 1308, 1386
SsiI CCGC 3 cut(s) 428, 1318, 1320
SspI AATATT 1 cut(s) 822
SspMI CTAG 5 cut(s) 245, 512, 569, 812, 1382
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 5 cut(s) 367, 857, 1287, 1336, 1399
TaiI ACGT 2 cut(s) 173, 262
TaqI TCGA 1 cut(s) 1001
TasI AATT 9 cut(s) 119, 356, 385, 516, 608, 650, 723, 1308, 1386
TatI WGTACW 4 cut(s) 592, 924, 1076, 1312
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 2 cut(s) 846, 1191
Tru1I TTAA 2 cut(s) 654, 1265
Tru9I TTAA 2 cut(s) 654, 1265
TscAI CASTG 4 cut(s) 131, 538, 1037, 1086
TseFI GTSAC 3 cut(s) 171, 877, 1035
TseI GCWGC 3 cut(s) 11, 131, 731
Tsp45I GTSAC 3 cut(s) 171, 877, 1035
TspDTI ATGAA 3 cut(s) 107, 222, 259
TspGWI ACGGA 2 cut(s) 960, 1305
TspRI CASTG 4 cut(s) 131, 538, 1037, 1086
Van91I CCANNNNNTGG 2 cut(s) 638, 1022
VpaK11BI GGWCC 2 cut(s) 36, 1260
XapI RAATTY 2 cut(s) 385, 516
XceI RCATGY 2 cut(s) 56, 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 639
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 2 cut(s) 162, 414
XspI CTAG 5 cut(s) 245, 512, 569, 812, 1382
Zsp2I ATGCAT 2 cut(s) 58, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.