MD09G1054900.v1.1

Pectinesterase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
3638853 .. 3653949
15097 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1054900.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGGCGGCCCTTGTTCTCAGGGTCGCGCAGGATGGCTCCGGCGACTTCCGGACGGTGCAGGAGGCCATCGACGCCGTTCCTCTCTGCAACACCCGTCGCACCGTGATTCGCGTCGCTTCCGGAATCTACCGGCAGCCAGTGTACGTGCCCAAGACGAAGAACCTCATCACGCTCGCGGGTCTGGCTCCGGAGCTCACTGTGCTCACCTGGAACAACACCGCCACCAAAATCGAGCACCACCAGGCTTCTCGGGTGATCGGAACTGGGACTTTCGGGTGTGGGAGTGCTATTGTGGAAGGAGAGGATTTTATTGCAGAGAACATCACTTTTGAGAACTCAGCTCCCGAGTGCAGTCTCACTGCTAACCCCAGGGGTTTGGATACGGCTGAATTTTCACAACAGGGATCAGGTCAAGCTGTGGCAATTAGAGTAACAGCTGATCGATGTGCCTTCTATAACTGCAGGTTCCTTGGATGGCAGGATACCCTATACTTGCATTATGGAAAGCAGTATCTGAAAGATTGTTATGTTGAAGGAAGTGTGGACTTCATTTTCGGCAATAGCTCAGCGCTTCTGGAGCATTGTCATATCCACTGCAAGTCAGCAGGTTTCATAACTGCCCAGAGCAGGAAATCTTCCCAGGAGACAACAGGATACGTATTCTTAAGATGTGTAATCACTGGAAATGGTGGGACTTCATATGCATATCTAGGACGACCGTGGGGACCTTTTGGAAGAGTCGTTTTTGCATATACATTTATGGATGGATGCATCAGACATGTAGGATGGAATAATTGGGGTAAAACAGAGAATGAACGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCAGGTAGTTGCCCATCGAAACGGGTGACATGGGCTAGAGAACTGGTAGACGAGGAAGCAGACCAGTTCCTCCAGCATCGTTTCATCGACCCAGATCCAGGAAGGCCTTGGCTTGCTCAGAGAATGGCCCTAAGAATACCATATTCTGCTTAG

Protein Analysis

335

Amino Acids

37.17

Weight (kDa)

7.51

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pectinesterase PF01095 8 - 314 1.4e-66 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 453, 596
AccI GTMKAC 1 cut(s) 900
AccII CGCG 3 cut(s) 26, 111, 176
AccIII TCCGGA 3 cut(s) 48, 119, 187
AciI CCGC 3 cut(s) 5, 176, 219
AclWI GGATC 2 cut(s) 412, 941
AcsI RAATTY 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 143
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 627, 950
AflII CTTAAG 1 cut(s) 664
AflIII ACRYGT 1 cut(s) 778
AgsI TTSAA 1 cut(s) 533
AjnI CCWGG 6 cut(s) 206, 240, 368, 639, 853, 949
AluBI AGCT 5 cut(s) 193, 341, 416, 437, 564
AluI AGCT 5 cut(s) 193, 341, 416, 437, 564
Alw21I GWGCWC 3 cut(s) 195, 204, 237
Alw26I GTCTC 2 cut(s) 359, 638
AlwI GGATC 2 cut(s) 412, 941
AlwNI CAGNNNCTG 1 cut(s) 514
Ama87I CYCGRG 2 cut(s) 249, 344
Aor13HI TCCGGA 3 cut(s) 48, 119, 187
Aor51HI AGCGCT 1 cut(s) 570
AoxI GGCC 4 cut(s) 6, 63, 956, 978
ApeKI GCWGC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 389
ArsI GACNNNNNNTTYG 2 cut(s) 536, 568
AspLEI GCGC 2 cut(s) 28, 571
AspS9I GGNCC 4 cut(s) 7, 725, 851, 979
AsuHPI GGTGA 3 cut(s) 196, 265, 889
AvaI CYCGRG 2 cut(s) 249, 344
AvaII GGWCC 2 cut(s) 725, 851
BaeGI GKGCMC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 3 cut(s) 195, 204, 237
BbvI GCAGC 1 cut(s) 145
BccI CCATC 6 cut(s) 26, 74, 468, 758, 780, 874
BceAI ACGGC 2 cut(s) 59, 399
BcgI CGANNNNNNTGC 2 cut(s) 807, 841
BciT130I CCWGG 6 cut(s) 208, 242, 370, 641, 855, 951
BciVI GTATCC 3 cut(s) 373, 475, 647
BcoDI GTCTC 2 cut(s) 359, 638
BfaI CTAG 2 cut(s) 710, 888
BfmI CTRYAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 572
BfrI CTTAAG 1 cut(s) 664
BfuAI ACCTGC 2 cut(s) 453, 596
BfuI GTATCC 3 cut(s) 373, 475, 647
BisI GCNGC 2 cut(s) 6, 134
BlpI GCTNAGC 1 cut(s) 565
BlsI GCNGC 2 cut(s) 7, 135
Bme1390I CCNGG 6 cut(s) 208, 242, 370, 641, 855, 951
Bme18I GGWCC 2 cut(s) 725, 851
BmeT110I CYCGRG 2 cut(s) 249, 344
BmgT120I GGNCC 4 cut(s) 7, 725, 851, 979
BmiI GGNNCC 4 cut(s) 37, 186, 467, 726
BmrFI CCNGG 6 cut(s) 208, 242, 370, 641, 855, 951
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 3 cut(s) 758, 780, 937
BmuI ACTGGG 1 cut(s) 273
BpmI CTGGAG 2 cut(s) 596, 908
Bpu1102I GCTNAGC 1 cut(s) 565
Bsa29I ATCGAT 1 cut(s) 442
BsaAI YACGTR 2 cut(s) 145, 658
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 6 cut(s) 368, 369, 469, 639, 719, 959
BsaWI WCCGGW 3 cut(s) 48, 119, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 627, 950
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 5 cut(s) 137, 268, 685, 900, 916
BseAI TCCGGA 3 cut(s) 48, 119, 187
BseBI CCWGG 6 cut(s) 208, 242, 370, 641, 855, 951
BseCI ATCGAT 1 cut(s) 442
BseDI CCNNGG 6 cut(s) 368, 369, 469, 639, 719, 959
BseGI GGATG 5 cut(s) 37, 479, 769, 773, 791
BseLI CCNNNNNNNGG 2 cut(s) 627, 950
BseMII CTCAG 4 cut(s) 31, 351, 579, 983
BseNI ACTGG 5 cut(s) 137, 268, 685, 900, 916
BseSI GKGCMC 1 cut(s) 150
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 2 cut(s) 77, 370
Bsh1236I CGCG 3 cut(s) 26, 111, 176
Bsh1285I CGRYCG 1 cut(s) 719
BshFI GGCC 4 cut(s) 8, 65, 958, 980
BshVI ATCGAT 1 cut(s) 442
BsiEI CGRYCG 1 cut(s) 719
BsiHKAI GWGCWC 3 cut(s) 195, 204, 237
BsiHKCI CYCGRG 2 cut(s) 249, 344
BsiSI CCGG 5 cut(s) 39, 49, 120, 130, 188
BslFI GGGAC 3 cut(s) 280, 706, 738
BslI CCNNNNNNNGG 2 cut(s) 627, 950
BsmAI GTCTC 2 cut(s) 359, 638
BsmFI GGGAC 3 cut(s) 280, 706, 738
BsnI GGCC 4 cut(s) 8, 65, 958, 980
BsoBI CYCGRG 2 cut(s) 249, 344
Bsp1286I GDGCHC 4 cut(s) 150, 195, 204, 237
Bsp13I TCCGGA 3 cut(s) 48, 119, 187
Bsp143I GATC 4 cut(s) 255, 404, 439, 946
Bsp1720I GCTNAGC 1 cut(s) 565
BspACI CCGC 3 cut(s) 5, 176, 219
BspANI GGCC 4 cut(s) 8, 65, 958, 980
BspCNI CTCAG 4 cut(s) 30, 350, 578, 982
BspDI ATCGAT 1 cut(s) 442
BspEI TCCGGA 3 cut(s) 48, 119, 187
BspFNI CGCG 3 cut(s) 26, 111, 176
BspLI GGNNCC 4 cut(s) 37, 186, 467, 726
BspMAI CTGCAG 1 cut(s) 464
BspMI ACCTGC 2 cut(s) 453, 596
BspPI GGATC 2 cut(s) 412, 941
BspTI CTTAAG 1 cut(s) 664
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 5 cut(s) 137, 268, 685, 900, 916
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 6 cut(s) 368, 369, 469, 639, 719, 959
BssMI GATC 4 cut(s) 255, 404, 439, 946
BssNI GRCGYC 1 cut(s) 72
BssT1I CCWWGG 2 cut(s) 469, 959
Bst2UI CCWGG 6 cut(s) 208, 242, 370, 641, 855, 951
Bst4CI ACNGT 4 cut(s) 55, 103, 199, 720
Bst6I CTCTTC 1 cut(s) 730
BstACI GRCGYC 1 cut(s) 72
BstAFI CTTAAG 1 cut(s) 664
BstBAI YACGTR 2 cut(s) 145, 658
BstC8I GCNNGC 3 cut(s) 174, 826, 966
BstDEI CTNAG 6 cut(s) 17, 337, 565, 969, 983, 1002
BstDSI CCRYGG 1 cut(s) 719
BstF5I GGATG 5 cut(s) 37, 479, 769, 773, 791
BstFNI CGCG 3 cut(s) 26, 111, 176
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 2 cut(s) 28, 571
BstKTI GATC 4 cut(s) 258, 407, 442, 949
BstMAI GTCTC 2 cut(s) 359, 638
BstMBI GATC 4 cut(s) 255, 404, 439, 946
BstMCI CGRYCG 1 cut(s) 719
BstMWI GCNNNNNNNGC 4 cut(s) 71, 182, 199, 577
BstNI CCWGG 6 cut(s) 208, 242, 370, 641, 855, 951
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 6 cut(s) 206, 240, 368, 639, 853, 949
BstSFI CTRYAG 1 cut(s) 460
BstSLI GKGCMC 1 cut(s) 150
BstSNI TACGTA 1 cut(s) 658
BstUI CGCG 3 cut(s) 26, 111, 176
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 946
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 1 cut(s) 946
Bsu15I ATCGAT 1 cut(s) 442
BsuI GTATCC 3 cut(s) 373, 475, 647
BsuRI GGCC 4 cut(s) 8, 65, 958, 980
BsuTUI ATCGAT 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 719
BtsCI GGATG 5 cut(s) 37, 479, 769, 773, 791
BtsI GCAGTG 2 cut(s) 357, 592
BtsIMutI CAGTG 5 cut(s) 144, 195, 357, 592, 678
BveI ACCTGC 2 cut(s) 453, 596
Cac8I GCNNGC 3 cut(s) 174, 826, 966
CaiI CAGNNNCTG 1 cut(s) 514
CfoI GCGC 2 cut(s) 28, 571
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 4 cut(s) 7, 725, 851, 979
ClaI ATCGAT 1 cut(s) 442
CseI GACGC 2 cut(s) 80, 100
CsiI ACCWGGT 1 cut(s) 853
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 779, 882
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 6 cut(s) 17, 337, 565, 969, 983, 1002
DpnI GATC 4 cut(s) 257, 406, 441, 948
DpnII GATC 4 cut(s) 255, 404, 439, 946
Eam1104I CTCTTC 1 cut(s) 730
EarI CTCTTC 1 cut(s) 730
Ecl136II GAGCTC 1 cut(s) 193
Eco105I TACGTA 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 469, 959
Eco147I AGGCCT 1 cut(s) 958
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 725, 851
Eco47III AGCGCT 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 193
Eco88I CYCGRG 2 cut(s) 249, 344
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 725
EcoRII CCWGG 6 cut(s) 206, 240, 368, 639, 853, 949
EcoT14I CCWWGG 2 cut(s) 469, 959
EcoT22I ATGCAT 2 cut(s) 706, 773
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 2 cut(s) 469, 959
FaeI CATG 2 cut(s) 782, 885
FaqI GGGAC 3 cut(s) 280, 706, 738
FatI CATG 2 cut(s) 778, 881
FauI CCCGC 1 cut(s) 169
FauNDI CATATG 1 cut(s) 700
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 2 cut(s) 6, 134
FokI GGATG 5 cut(s) 44, 486, 776, 780, 798
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 2 cut(s) 6, 134
FspBI CTAG 2 cut(s) 710, 888
GlaI GCGC 2 cut(s) 27, 570
GluI GCNGC 2 cut(s) 6, 134
GsuI CTGGAG 2 cut(s) 596, 908
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 4 cut(s) 8, 65, 958, 980
HapII CCGG 5 cut(s) 39, 49, 120, 130, 188
HgaI GACGC 2 cut(s) 80, 100
HhaI GCGC 2 cut(s) 28, 571
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 2 cut(s) 782, 885
Hin6I GCGC 2 cut(s) 26, 569
HinP1I GCGC 2 cut(s) 26, 569
HinfI GANTC 3 cut(s) 106, 123, 738
HpaII CCGG 5 cut(s) 39, 49, 120, 130, 188
HphI GGTGA 3 cut(s) 196, 265, 889
Hpy166II GTNNAC 3 cut(s) 142, 544, 901
Hpy188I TCNGA 4 cut(s) 260, 516, 776, 972
Hpy188III TCNNGA 5 cut(s) 49, 120, 188, 344, 575
Hpy8I GTNNAC 3 cut(s) 142, 544, 901
Hpy99I CGWCG 3 cut(s) 74, 99, 116
HpyAV CCTTC 4 cut(s) 290, 460, 527, 948
HpyCH4III ACNGT 4 cut(s) 55, 103, 199, 720
HpyCH4IV ACGT 2 cut(s) 144, 657
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 182, 199, 577
HpyF3I CTNAG 6 cut(s) 17, 337, 565, 969, 983, 1002
HpySE526I ACGT 2 cut(s) 144, 657
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 2 cut(s) 782, 885
HspAI GCGC 2 cut(s) 26, 569
Kpn2I TCCGGA 3 cut(s) 48, 119, 187
Kzo9I GATC 4 cut(s) 255, 404, 439, 946
LmnI GCTCC 5 cut(s) 41, 190, 190, 346, 577
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 3 cut(s) 758, 780, 937
MabI ACCWGGT 1 cut(s) 853
MaeI CTAG 2 cut(s) 710, 888
MaeII ACGT 2 cut(s) 144, 657
MaeIII GTNAC 2 cut(s) 430, 877
MalI GATC 4 cut(s) 257, 406, 441, 948
MboI GATC 4 cut(s) 255, 404, 439, 946
MboII GAAGA 3 cut(s) 169, 627, 747
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 4 cut(s) 150, 195, 204, 237
MluCI AATT 3 cut(s) 389, 423, 793
MlyI GAGTC 1 cut(s) 747
MnlI CCTC 6 cut(s) 55, 90, 173, 295, 898, 932
Mph1103I ATGCAT 2 cut(s) 706, 773
MroI TCCGGA 3 cut(s) 48, 119, 187
MseI TTAA 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 664
MspI CCGG 5 cut(s) 39, 49, 120, 130, 188
MspR9I CCNGG 6 cut(s) 208, 242, 370, 641, 855, 951
MvaI CCWGG 6 cut(s) 208, 242, 370, 641, 855, 951
MvnI CGCG 3 cut(s) 26, 111, 176
MwoI GCNNNNNNNGC 4 cut(s) 71, 182, 199, 577
NdeI CATATG 1 cut(s) 700
NdeII GATC 4 cut(s) 255, 404, 439, 946
NlaIII CATG 2 cut(s) 782, 885
NlaIV GGNNCC 4 cut(s) 37, 186, 467, 726
NmuCI GTSAC 1 cut(s) 877
NsiI ATGCAT 2 cut(s) 706, 773
NspI RCATGY 1 cut(s) 782
PasI CCCWGGG 1 cut(s) 369
PceI AGGCCT 1 cut(s) 958
PciI ACATGT 1 cut(s) 778
PfeI GAWTC 2 cut(s) 106, 123
PfoI TCCNGGA 1 cut(s) 949
PkrI GCNGC 2 cut(s) 7, 135
PleI GAGTC 1 cut(s) 746
PpsI GAGTC 1 cut(s) 746
Ppu21I YACGTR 2 cut(s) 145, 658
PpuMI RGGWCCY 1 cut(s) 725
PscI ACATGT 1 cut(s) 778
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 725
Psp6I CCWGG 6 cut(s) 206, 240, 368, 639, 853, 949
PspGI CCWGG 6 cut(s) 206, 240, 368, 639, 853, 949
PspN4I GGNNCC 4 cut(s) 37, 186, 467, 726
PspPI GGNCC 4 cut(s) 7, 725, 851, 979
PspPPI RGGWCCY 1 cut(s) 725
PstI CTGCAG 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 1 cut(s) 946
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 665
SatI GCNGC 2 cut(s) 6, 134
Sau3AI GATC 4 cut(s) 255, 404, 439, 946
Sau96I GGNCC 4 cut(s) 7, 725, 851, 979
SchI GAGTC 1 cut(s) 747
ScrFI CCNGG 6 cut(s) 208, 242, 370, 641, 855, 951
SduI GDGCHC 4 cut(s) 150, 195, 204, 237
SexAI ACCWGGT 1 cut(s) 853
SfaNI GCATC 3 cut(s) 758, 780, 937
SfcI CTRYAG 1 cut(s) 460
SinI GGWCC 2 cut(s) 725, 851
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
SnaBI TACGTA 1 cut(s) 658
Sse9I AATT 3 cut(s) 389, 423, 793
SseBI AGGCCT 1 cut(s) 958
SsiI CCGC 3 cut(s) 5, 176, 219
SspMI CTAG 2 cut(s) 710, 888
SstI GAGCTC 1 cut(s) 195
StuI AGGCCT 1 cut(s) 958
StyD4I CCNGG 6 cut(s) 206, 240, 368, 639, 853, 949
StyI CCWWGG 2 cut(s) 469, 959
TaaI ACNGT 4 cut(s) 55, 103, 199, 720
TaiI ACGT 2 cut(s) 147, 660
TaqI TCGA 5 cut(s) 69, 231, 442, 869, 939
TasI AATT 3 cut(s) 389, 423, 793
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 106, 123
Tru1I TTAA 1 cut(s) 665
Tru9I TTAA 1 cut(s) 665
TscAI CASTG 5 cut(s) 144, 202, 364, 599, 685
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 6 cut(s) 538, 601, 687, 828, 849, 925
TspRI CASTG 5 cut(s) 144, 202, 364, 599, 685
Vha464I CTTAAG 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 725, 851
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 782
XcmI CCANNNNNNNNNTGG 1 cut(s) 957
XmiI GTMKAC 1 cut(s) 900
XspI CTAG 2 cut(s) 710, 888
Zsp2I ATGCAT 2 cut(s) 706, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.