Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004453

Physical Location & Seq

Genomic Coordinates Forward (+)

86282102 .. 86284073

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCCGACTGTGTGAAAACGGTGTCACAGGACGGCTCCGGTGACTACCGCACCGTACAGGAGGCCATCGACGCCGTGCCTCTCAAAAACACGTGTCGCATTGTGATTCGTATATCTCCCGGCATCTACCAGCAGCCGGTGTATGTCCCCAAGACCAAGAACCTCATCACACTGACGGGTTTGCTTCCGGAGGAAACTGTGCTGACGTGGAACAACACCGCCACCAAAATCGAGCACCATCAGAATTCTGAGGTGATTGGGACTGGGACTTTTGCATGTGGGAGTACAATAGTGGAAGGAGAGGACTTCATTGCTGAGAATATCACTTTTGAGAACTCTTGTCCTGAGGGTTCAGGCCAAGCTGTGGCAATGAGAGTAACAGCGGATAGGTGTGCCTTCTATAACTGCAGATTCCTTGGATGGCAGGATACCCTATACTTACATCATGGAAAGCAGTATTTGAAAGATTGTTATATTGAAGGAAGTGTAGACTTCATTTTCGGCAATAGCACAGCTCTTTTGGAGCATTGTCATATCCACTGCAAGTCGGAAGGTTTCATAACCGCGCACAAAAGAAATTCATGCGAGGAGGCAACAGGATATGTGTTCCTAAGATGTGTAATCACTGGAAATGGAGGTACTCCATACGCATTTCTGGGACGACCATGGGGACCTTGTGGAAGAGTGGTCTTTGCATTTACATATATGGATGCATGCATCAAACATGTAGGCTGGAATAATTGGGATAAAATAGAGAATGAAGGAAGCGCTTGCTTTAACGAATACAAGTGTTTCGGACCGGGTAGTTGCCCAGAAAAACGAGTGACATGGGCTAGACAACTGGGATGTGAGGAAGCAGACCATTTCCTCAATCATTGTTACATCGACCCAGACCCGCAAAGGCCTTGGCTTGCTCAGAGAATGGCCCTAAGAATACCACATTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

316

Amino Acids

35.39

Weight (kDa)

5.94

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	7 - 295	9e-69	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29090
fragaria_vesca	FvH4_1g06980 FvH4_6g48010
malus_domestica	MD09G1054900.v1.1 MD17G1053000.v1.1
prunus_persica	Prupe.3G263600_v2.0.a1 Prupe.3G263600_v2.0.a1
pyrus_communis	pycom111g04620 pycom17g05100
rosa_chinensis	RchiOBHm_Chr2g0092931 RchiOBHm_Chr2g0167301
rosa_laevigata	RLG00000016350 RLG00000021705 RLG00000021733
rosa_multiflora	Rmu_sc0001840.1_g000018 Rmu_sc0014009.1_g000002 Rmu_sc0014204.1_g000002 Rmu_sc0038920.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083630 Rroxscaffold_2G00148700
rosa_rugosa	Rorug02G0030300 Rorug02G0529300
rosa_samantha	Rh2AG076400 Rh2AG596300 Rh2BG077700 Rh2BG607700 Rh2CG079900 Rh2CG578400 Rh2DG075000 Rh2DG619100
rosa_wichuraiana	Rw2G006980 Rw2G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	489
AccII	CGCG	1 cut(s)	566
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	5 cut(s)	49, 219, 383, 564, 896
AcsI	RAATTY	2 cut(s)	244, 577
AcvI	CACGTG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	57, 286, 640
AfeI	AGCGCT	1 cut(s)	769
AfiI	CCNNNNNNNGG	2 cut(s)	136, 364
AflIII	ACRYGT	3 cut(s)	90, 92, 724
AgsI	TTSAA	2 cut(s)	463, 479
AjiI	CACGTC	1 cut(s)	207
AluBI	AGCT	2 cut(s)	362, 515
AluI	AGCT	2 cut(s)	362, 515
Alw21I	GWGCWC	1 cut(s)	237
Aor13HI	TCCGGA	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	769
AoxI	GGCC	4 cut(s)	63, 355, 902, 924
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	2 cut(s)	244, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspLEI	GCGC	2 cut(s)	568, 770
AspS9I	GGNCC	3 cut(s)	671, 797, 925
AsuC2I	CCSGG	2 cut(s)	120, 801
AsuHPI	GGTGA	2 cut(s)	53, 265
AvaII	GGWCC	2 cut(s)	671, 797
AxyI	CCTNAGG	1 cut(s)	345
BbrPI	CACGTG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	3 cut(s)	74, 246, 414
BceAI	ACGGC	2 cut(s)	49, 59
BciVI	GTATCC	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	120, 801
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	2 cut(s)	120, 801
Bme18I	GGWCC	2 cut(s)	671, 797
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	3 cut(s)	671, 797, 925
BmiI	GGNNCC	2 cut(s)	37, 672
BmrFI	CCNGG	2 cut(s)	120, 801
BmrI	ACTGGG	2 cut(s)	273, 851
BmsI	GCATC	3 cut(s)	132, 700, 726
BmuI	ACTGGG	2 cut(s)	273, 851
BpuMI	CCSGG	2 cut(s)	120, 801
BsaAI	YACGTR	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	415, 665, 905
BsaWI	WCCGGW	2 cut(s)	38, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 364
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	3 cut(s)	268, 631, 846
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	309, 375
BseAI	TCCGGA	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	415, 665, 905
BseGI	GGATG	3 cut(s)	425, 715, 851
BseLI	CCNNNNNNNGG	2 cut(s)	136, 364
BseMI	GCAATG	2 cut(s)	309, 375
BseMII	CTCAG	4 cut(s)	240, 306, 336, 929
BseNI	ACTGG	3 cut(s)	268, 631, 846
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	4 cut(s)	65, 357, 904, 926
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	5 cut(s)	39, 120, 137, 188, 800
BslFI	GGGAC	5 cut(s)	131, 274, 280, 672, 684
BslI	CCNNNNNNNGG	2 cut(s)	136, 364
BsmFI	GGGAC	5 cut(s)	131, 274, 280, 672, 684
BsnI	GGCC	4 cut(s)	65, 357, 904, 926
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	187
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	5 cut(s)	49, 219, 383, 564, 896
BspANI	GGCC	4 cut(s)	65, 357, 904, 926
BspCNI	CTCAG	4 cut(s)	241, 307, 337, 928
BspEI	TCCGGA	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	37, 672
BspMAI	CTGCAG	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	309, 375
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	268, 631, 846
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	415, 665, 905
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	3 cut(s)	415, 665, 905
Bst4CI	ACNGT	4 cut(s)	11, 22, 55, 199
Bst6I	CTCTTC	1 cut(s)	676
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	715, 772, 912
BstDEI	CTNAG	6 cut(s)	249, 315, 345, 611, 915, 929
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	3 cut(s)	425, 715, 851
BstFNI	CGCG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	771
BstHHI	GCGC	2 cut(s)	568, 770
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	3 cut(s)	279, 717, 728
BstSCI	CCNGG	2 cut(s)	118, 799
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	65, 357, 904, 926
BtgI	CCRYGG	1 cut(s)	665
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	425, 715, 851
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	3 cut(s)	170, 538, 624
Cac8I	GCNNGC	3 cut(s)	715, 772, 912
CfoI	GCGC	2 cut(s)	568, 770
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	671, 797, 925
CpoI	CGGWCCG	1 cut(s)	797
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	56, 285, 639
CspI	CGGWCCG	1 cut(s)	797
CviAII	CATG	7 cut(s)	276, 446, 582, 666, 714, 725, 828
CviQI	GTAC	3 cut(s)	56, 285, 639
DdeI	CTNAG	6 cut(s)	249, 315, 345, 611, 915, 929
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Eco130I	CCWWGG	3 cut(s)	415, 665, 905
Eco147I	AGGCCT	1 cut(s)	904
Eco47I	GGWCC	2 cut(s)	671, 797
Eco47III	AGCGCT	1 cut(s)	769
Eco72I	CACGTG	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	3 cut(s)	415, 665, 905
EcoT22I	ATGCAT	2 cut(s)	715, 719
ErhI	CCWWGG	3 cut(s)	415, 665, 905
FaeI	CATG	7 cut(s)	279, 449, 585, 669, 717, 728, 831
FaqI	GGGAC	5 cut(s)	131, 274, 280, 672, 684
FatI	CATG	7 cut(s)	275, 445, 581, 665, 713, 724, 827
FauI	CCCGC	1 cut(s)	903
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	3 cut(s)	432, 722, 858
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	2 cut(s)	567, 769
GluI	GCNGC	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	771
HaeIII	GGCC	4 cut(s)	65, 357, 904, 926
HapII	CCGG	5 cut(s)	39, 120, 137, 188, 800
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	2 cut(s)	568, 770
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	7 cut(s)	279, 449, 585, 669, 717, 728, 831
Hin6I	GCGC	2 cut(s)	566, 768
HinP1I	GCGC	2 cut(s)	566, 768
HinfI	GANTC	2 cut(s)	106, 411
HpaII	CCGG	5 cut(s)	39, 120, 137, 188, 800
HphI	GGTGA	2 cut(s)	53, 265
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	6 cut(s)	7, 243, 250, 550, 797, 918
Hpy188III	TCNNGA	2 cut(s)	188, 344
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	290, 406, 473, 545, 755
HpyCH4III	ACNGT	4 cut(s)	11, 22, 55, 199
HpyCH4IV	ACGT	2 cut(s)	92, 206
HpyCH4V	TGCA	7 cut(s)	275, 408, 543, 695, 713, 717, 947
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	6 cut(s)	249, 315, 345, 611, 915, 929
HpySE526I	ACGT	2 cut(s)	92, 206
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	7 cut(s)	279, 449, 585, 669, 717, 728, 831
HspAI	GCGC	2 cut(s)	566, 768
Kpn2I	TCCGGA	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	41, 523
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	3 cut(s)	132, 700, 726
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	2 cut(s)	92, 206
MaeIII	GTNAC	5 cut(s)	24, 41, 376, 823, 878
MboII	GAAGA	1 cut(s)	693
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	3 cut(s)	244, 577, 739
MmeI	TCCRAC	2 cut(s)	30, 528
Mph1103I	ATGCAT	2 cut(s)	715, 719
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	5 cut(s)	39, 120, 137, 188, 800
MspR9I	CCNGG	2 cut(s)	120, 801
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	2 cut(s)	120, 801
NcoI	CCATGG	1 cut(s)	665
NlaIII	CATG	7 cut(s)	279, 449, 585, 669, 717, 728, 831
NlaIV	GGNNCC	2 cut(s)	37, 672
NmuCI	GTSAC	3 cut(s)	24, 41, 823
NsiI	ATGCAT	2 cut(s)	715, 719
NspI	RCATGY	3 cut(s)	279, 717, 728
PaeI	GCATGC	1 cut(s)	717
PceI	AGGCCT	1 cut(s)	904
PciI	ACATGT	1 cut(s)	724
PfeI	GAWTC	2 cut(s)	106, 411
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	93
PmlI	CACGTG	1 cut(s)	93
Ppu21I	YACGTR	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	671
PscI	ACATGT	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	671
PspCI	CACGTG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	37, 672
PspPI	GGNCC	3 cut(s)	671, 797, 925
PspPPI	RGGWCCY	1 cut(s)	671
PstI	CTGCAG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	57, 286, 640
RsaNI	GTAC	3 cut(s)	56, 285, 639
Rsr2I	CGGWCCG	1 cut(s)	797
RsrII	CGGWCCG	1 cut(s)	797
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	1 cut(s)	134
Sau96I	GGNCC	3 cut(s)	671, 797, 925
ScrFI	CCNGG	2 cut(s)	120, 801
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	3 cut(s)	132, 700, 726
SfcI	CTRYAG	1 cut(s)	406
SinI	GGWCC	2 cut(s)	671, 797
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	3 cut(s)	244, 577, 739
SseBI	AGGCCT	1 cut(s)	904
SsiI	CCGC	5 cut(s)	49, 219, 383, 564, 896
SspMI	CTAG	1 cut(s)	834
StuI	AGGCCT	1 cut(s)	904
StyD4I	CCNGG	2 cut(s)	118, 799
StyI	CCWWGG	3 cut(s)	415, 665, 905
TaaI	ACNGT	4 cut(s)	11, 22, 55, 199
TaiI	ACGT	2 cut(s)	95, 209
TaqI	TCGA	3 cut(s)	69, 231, 885
TasI	AATT	3 cut(s)	244, 577, 739
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	2 cut(s)	106, 411
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	3 cut(s)	177, 545, 631
TseFI	GTSAC	3 cut(s)	24, 41, 823
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	3 cut(s)	24, 41, 823
TspDTI	ATGAA	5 cut(s)	298, 484, 547, 570, 774
TspRI	CASTG	3 cut(s)	177, 545, 631
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	2 cut(s)	671, 797
XapI	RAATTY	2 cut(s)	244, 577
XceI	RCATGY	3 cut(s)	279, 717, 728
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	1 cut(s)	834
Zsp2I	ATGCAT	2 cut(s)	715, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.