Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0004453

Physical Location & Seq

Genomic Coordinates Forward (+)

2804262 .. 2805760

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGGCCCTCGTTCTCAGGGTCGCGCAGGATGGCTCCGGCGACTTCCGGACGGTGCAGGAGGCCATCGACGCCGTTCCTCTCTGCAACACCCGTCGCACCGTGATTCGCGTCGCTTCCGGAATCTACCGGCAGCCGGTGTACGTGCCCAAGACGAAGAACCTCATCACGCTCGCGGGTCTGGCTCCGGAGCTCACTGTGCTCACCTGGAACAACACCGCCACCAAAATCGAGCACCACCAGGCTTCTCGGGTGATCGGAACTGGGACTTTCGGGTGTGGGAGTGCTATTGTGGAAGGAGAGGATTTTATTGCAGAGAACATCACTTTTGAGAACTCAGCTCCTGAGGGATCGGGTCAAGCTGTGGCAATTAGAGTAACAGATGATCGATGTGCCTTCTATAACTGCAGGTTCCTTGGATGGCAGGTATACCCATTACCCTATACCTGCATTATGGAAAGCAGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

157

Amino Acids

17.0

Weight (kDa)

5.65

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29090
fragaria_vesca	FvH4_1g06980 FvH4_6g48010
malus_domestica	MD09G1054900.v1.1 MD17G1053000.v1.1
prunus_persica	Prupe.3G263600_v2.0.a1 Prupe.3G263600_v2.0.a1
pyrus_communis	pycom111g04620 pycom17g05100
rosa_chinensis	RchiOBHm_Chr2g0092931 RchiOBHm_Chr2g0167301
rosa_laevigata	RLG00000016350 RLG00000021705 RLG00000021733
rosa_multiflora	Rmu_sc0001840.1_g000018 Rmu_sc0014009.1_g000002 Rmu_sc0014204.1_g000002 Rmu_sc0038920.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083630 Rroxscaffold_2G00148700
rosa_rugosa	Rorug02G0030300 Rorug02G0529300
rosa_samantha	Rh2AG076400 Rh2AG596300 Rh2BG077700 Rh2BG607700 Rh2CG079900 Rh2CG578400 Rh2DG075000 Rh2DG619100
rosa_wichuraiana	Rw2G006980 Rw2G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	399, 415, 455
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	3 cut(s)	26, 111, 176
AccIII	TCCGGA	3 cut(s)	48, 119, 187
AciI	CCGC	3 cut(s)	5, 176, 219
AclWI	GGATC	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	206, 240
AluBI	AGCT	3 cut(s)	193, 341, 362
AluI	AGCT	3 cut(s)	193, 341, 362
Alw21I	GWGCWC	3 cut(s)	195, 204, 237
AlwI	GGATC	1 cut(s)	358
AlwNI	CAGNNNCTG	2 cut(s)	344, 468
Ama87I	CYCGRG	1 cut(s)	249
Aor13HI	TCCGGA	3 cut(s)	48, 119, 187
AoxI	GGCC	2 cut(s)	6, 63
ApeKI	GCWGC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	196, 265
AvaI	CYCGRG	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	3 cut(s)	195, 204, 237
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	3 cut(s)	26, 74, 414
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	208, 242
BfmI	CTRYAG	1 cut(s)	406
BfuAI	ACCTGC	3 cut(s)	399, 415, 455
BisI	GCNGC	2 cut(s)	6, 134
BlsI	GCNGC	2 cut(s)	7, 135
Bme1390I	CCNGG	2 cut(s)	208, 242
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	3 cut(s)	37, 186, 413
BmrFI	CCNGG	2 cut(s)	208, 242
BmrI	ACTGGG	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	415
BsaWI	WCCGGW	3 cut(s)	48, 119, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	2 cut(s)	129, 136
Bse1I	ACTGG	1 cut(s)	268
Bse21I	CCTNAGG	1 cut(s)	345
BseAI	TCCGGA	3 cut(s)	48, 119, 187
BseBI	CCWGG	2 cut(s)	208, 242
BseCI	ATCGAT	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	2 cut(s)	37, 425
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	3 cut(s)	31, 336, 351
BseNI	ACTGG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	3 cut(s)	26, 111, 176
BshFI	GGCC	2 cut(s)	8, 65
BshVI	ATCGAT	1 cut(s)	388
BsiHKAI	GWGCWC	3 cut(s)	195, 204, 237
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	6 cut(s)	39, 49, 120, 130, 137, 188
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	8, 65
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	4 cut(s)	150, 195, 204, 237
Bsp13I	TCCGGA	3 cut(s)	48, 119, 187
Bsp143I	GATC	3 cut(s)	255, 350, 385
BspACI	CCGC	3 cut(s)	5, 176, 219
BspANI	GGCC	2 cut(s)	8, 65
BspCNI	CTCAG	3 cut(s)	30, 337, 350
BspDI	ATCGAT	1 cut(s)	388
BspEI	TCCGGA	3 cut(s)	48, 119, 187
BspFNI	CGCG	3 cut(s)	26, 111, 176
BspLI	GGNNCC	3 cut(s)	37, 186, 413
BspMAI	CTGCAG	1 cut(s)	410
BspMI	ACCTGC	3 cut(s)	399, 415, 455
BspPI	GGATC	1 cut(s)	358
BsrFI	RCCGGY	2 cut(s)	129, 136
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	2 cut(s)	129, 136
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	3 cut(s)	255, 350, 385
BssNAI	GTATAC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	208, 242
Bst4CI	ACNGT	3 cut(s)	55, 103, 199
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	17, 337, 345
BstF5I	GGATG	2 cut(s)	37, 425
BstFNI	CGCG	3 cut(s)	26, 111, 176
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	258, 353, 388
BstMBI	GATC	3 cut(s)	255, 350, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 182, 199
BstNI	CCWGG	2 cut(s)	208, 242
BstSCI	CCNGG	2 cut(s)	206, 240
BstSFI	CTRYAG	1 cut(s)	406
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	3 cut(s)	26, 111, 176
BstV1I	GCAGC	1 cut(s)	145
BstZ17I	GTATAC	1 cut(s)	430
Bsu15I	ATCGAT	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	8, 65
BsuTUI	ATCGAT	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	37, 425
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	3 cut(s)	399, 415, 455
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	2 cut(s)	344, 468
CfoI	GCGC	1 cut(s)	28
Cfr10I	RCCGGY	2 cut(s)	129, 136
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	388
CseI	GACGC	2 cut(s)	80, 100
Csp6I	GTAC	1 cut(s)	142
CviJI	RGCY	9 cut(s)	8, 36, 65, 136, 185, 193, 245, 341, 362
CviKI_1	RGCY	9 cut(s)	8, 36, 65, 136, 185, 193, 245, 341, 362
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	3 cut(s)	17, 337, 345
DpnI	GATC	3 cut(s)	257, 352, 387
DpnII	GATC	3 cut(s)	255, 350, 385
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	206, 240
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	415
FaiI	YATR	4 cut(s)	402, 430, 444, 455
FaqI	GGGAC	1 cut(s)	280
FauI	CCCGC	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	6, 134
FokI	GGATG	2 cut(s)	44, 432
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	6, 134
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	6, 134
HaeIII	GGCC	2 cut(s)	8, 65
HapII	CCGG	6 cut(s)	39, 49, 120, 130, 137, 188
HgaI	GACGC	2 cut(s)	80, 100
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	106, 123
HpaII	CCGG	6 cut(s)	39, 49, 120, 130, 137, 188
HphI	GGTGA	2 cut(s)	196, 265
Hpy166II	GTNNAC	2 cut(s)	142, 430
Hpy188I	TCNGA	2 cut(s)	260, 470
Hpy188III	TCNNGA	4 cut(s)	49, 120, 188, 344
Hpy8I	GTNNAC	2 cut(s)	142, 430
Hpy99I	CGWCG	3 cut(s)	74, 99, 116
HpyAV	CCTTC	2 cut(s)	290, 406
HpyCH4III	ACNGT	3 cut(s)	55, 103, 199
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	5 cut(s)	58, 87, 314, 408, 450
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 182, 199
HpyF3I	CTNAG	3 cut(s)	17, 337, 345
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	1 cut(s)	26
Kpn2I	TCCGGA	3 cut(s)	48, 119, 187
Kzo9I	GATC	3 cut(s)	255, 350, 385
LmnI	GCTCC	4 cut(s)	41, 190, 190, 346
Lsp1109I	GCAGC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	257, 352, 387
MboI	GATC	3 cut(s)	255, 350, 385
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	4 cut(s)	150, 195, 204, 237
MluCI	AATT	1 cut(s)	369
MnlI	CCTC	6 cut(s)	20, 55, 90, 173, 295, 340
MroI	TCCGGA	3 cut(s)	48, 119, 187
MspI	CCGG	6 cut(s)	39, 49, 120, 130, 137, 188
MspR9I	CCNGG	2 cut(s)	208, 242
MvaI	CCWGG	2 cut(s)	208, 242
MvnI	CGCG	3 cut(s)	26, 111, 176
MwoI	GCNNNNNNNGC	3 cut(s)	71, 182, 199
NdeII	GATC	3 cut(s)	255, 350, 385
NlaIV	GGNNCC	3 cut(s)	37, 186, 413
PfeI	GAWTC	2 cut(s)	106, 123
PkrI	GCNGC	2 cut(s)	7, 135
Ppu21I	YACGTR	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	206, 240
PspGI	CCWGG	2 cut(s)	206, 240
PspN4I	GGNNCC	3 cut(s)	37, 186, 413
PspPI	GGNCC	1 cut(s)	7
PstI	CTGCAG	1 cut(s)	410
PstNI	CAGNNNCTG	2 cut(s)	344, 468
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	6, 134
Sau3AI	GATC	3 cut(s)	255, 350, 385
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	208, 242
SduI	GDGCHC	4 cut(s)	150, 195, 204, 237
SetI	ASST	9 cut(s)	147, 165, 195, 209, 343, 364, 413, 429, 449
SfcI	CTRYAG	1 cut(s)	406
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	3 cut(s)	5, 176, 219
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	206, 240
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	55, 103, 199
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	69, 231, 388
TasI	AATT	1 cut(s)	369
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	106, 123
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	1 cut(s)	133
TspRI	CASTG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.