Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014204.1

Orthogroup ID

OG0004453

Physical Location & Seq

Genomic Coordinates Reverse (-)

5806 .. 7407

Gene Structure 1602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014204.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgtcggcctatgtgataaccgtgtcacaggacggctccggtaaccaccgcaccgttcaggaggccatcgacgccgtgcctctctgcaacacgtgtcgcactgtgattcgtatagctcccggcatctaccggcagccggtgtatgtccccaagaccaagaacctcatcacactcgcgggtctgcgaccggagggtactgtgctgacgtggaacaacaccgccaccaaaatcgagcaccaccaggcttctagggtgattgggactgggacttttggatgtgggagtacaattgtggaaggagaggacttcattgctgagaatatcacttttgagaactcttctcctgagggttcgggccaagctgtggcaattagagtaacggctgatcggtgcgccttctataactgcagattccttggatggcaggataccctgtacttgcattatggaaagcagtatttgaaagattgttatattgaaggaagtgtagacttcattttcggtaatagcacagctcttttggagcattgtcatatccactgcaagtcagcaggtttcataactgcgcaaagcaggaaatcatcccaggagactacaggatatgtgttcctaaggtatgcgatcactagtcttttagtttcttgttccttccccaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

219

Amino Acids

24.11

Weight (kDa)

7.58

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29090
fragaria_vesca	FvH4_1g06980 FvH4_6g48010
malus_domestica	MD09G1054900.v1.1 MD17G1053000.v1.1
prunus_persica	Prupe.3G263600_v2.0.a1 Prupe.3G263600_v2.0.a1
pyrus_communis	pycom111g04620 pycom17g05100
rosa_chinensis	RchiOBHm_Chr2g0092931 RchiOBHm_Chr2g0167301
rosa_laevigata	RLG00000016350 RLG00000021705 RLG00000021733
rosa_multiflora	Rmu_sc0001840.1_g000018 Rmu_sc0014009.1_g000002 Rmu_sc0014204.1_g000002 Rmu_sc0038920.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083630 Rroxscaffold_2G00148700
rosa_rugosa	Rorug02G0030300 Rorug02G0529300
rosa_samantha	Rh2AG076400 Rh2AG596300 Rh2BG077700 Rh2BG607700 Rh2CG079900 Rh2CG578400 Rh2DG075000 Rh2DG619100
rosa_wichuraiana	Rw2G006980 Rw2G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	567
Acc36I	ACCTGC	1 cut(s)	542
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	489
AccII	CGCG	1 cut(s)	176
AciI	CCGC	3 cut(s)	49, 176, 219
AcvI	CACGTG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	196, 286, 437
AfiI	CCNNNNNNNGG	2 cut(s)	136, 364
AflIII	ACRYGT	2 cut(s)	90, 92
AgsI	TTSAA	2 cut(s)	463, 479
AhlI	ACTAGT	1 cut(s)	626
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	2 cut(s)	240, 585
AluBI	AGCT	3 cut(s)	116, 362, 515
AluI	AGCT	3 cut(s)	116, 362, 515
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	584
AoxI	GGCC	3 cut(s)	6, 63, 355
ApeKI	GCWGC	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspLEI	GCGC	2 cut(s)	395, 568
AspS9I	GGNCC	1 cut(s)	355
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	265
AxyI	CCTNAGG	2 cut(s)	345, 611
BbrPI	CACGTG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	74, 414
BceAI	ACGGC	3 cut(s)	49, 59, 396
BciT130I	CCWGG	2 cut(s)	242, 587
BciVI	GTATCC	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	584
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	2 cut(s)	249, 627
BfmI	CTRYAG	2 cut(s)	406, 594
BfuAI	ACCTGC	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	3 cut(s)	120, 242, 587
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	3 cut(s)	120, 242, 587
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	415, 585
BsaWI	WCCGGW	2 cut(s)	38, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 364
Bse118I	RCCGGY	2 cut(s)	129, 136
Bse1I	ACTGG	1 cut(s)	268
Bse21I	CCTNAGG	2 cut(s)	345, 611
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	242, 587
BseDI	CCNNGG	2 cut(s)	415, 585
BseGI	GGATG	3 cut(s)	281, 425, 581
BseLI	CCNNNNNNNGG	2 cut(s)	136, 364
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	306, 336
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	8, 65, 357
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	5 cut(s)	39, 120, 130, 137, 188
BslFI	GGGAC	3 cut(s)	131, 274, 280
BslI	CCNNNNNNNGG	2 cut(s)	136, 364
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	3 cut(s)	131, 274, 280
BsnI	GGCC	3 cut(s)	8, 65, 357
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	385, 621
BspACI	CCGC	3 cut(s)	49, 176, 219
BspANI	GGCC	3 cut(s)	8, 65, 357
BspCNI	CTCAG	2 cut(s)	307, 337
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	2 cut(s)	129, 136
BsrI	ACTGG	1 cut(s)	268
BssAI	RCCGGY	2 cut(s)	129, 136
BssECI	CCNNGG	2 cut(s)	415, 585
BssMI	GATC	2 cut(s)	385, 621
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	242, 587
Bst4CI	ACNGT	4 cut(s)	22, 55, 103, 199
Bst6I	CTCTTC	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	315, 345, 611
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	3 cut(s)	281, 425, 581
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	2 cut(s)	395, 568
BstKTI	GATC	2 cut(s)	388, 624
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	2 cut(s)	385, 621
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	242, 587
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	118, 240, 585
BstSFI	CTRYAG	2 cut(s)	406, 594
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	145
Bsu36I	CCTNAGG	2 cut(s)	345, 611
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	3 cut(s)	8, 65, 357
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	3 cut(s)	281, 425, 581
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	99, 538
BveI	ACCTGC	1 cut(s)	542
CfoI	GCGC	2 cut(s)	395, 568
Cfr10I	RCCGGY	2 cut(s)	129, 136
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	195, 285, 436
CviQI	GTAC	3 cut(s)	195, 285, 436
DdeI	CTNAG	3 cut(s)	315, 345, 611
DpnI	GATC	2 cut(s)	387, 623
DpnII	GATC	2 cut(s)	385, 621
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	415
Eco72I	CACGTG	1 cut(s)	93
Eco81I	CCTNAGG	2 cut(s)	345, 611
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	240, 585
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaqI	GGGAC	3 cut(s)	131, 274, 280
FauI	CCCGC	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	3 cut(s)	288, 432, 568
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	2 cut(s)	249, 627
FspI	TGCGCA	1 cut(s)	567
GlaI	GCGC	2 cut(s)	394, 567
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	3 cut(s)	8, 65, 357
HapII	CCGG	5 cut(s)	39, 120, 130, 137, 188
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	2 cut(s)	395, 568
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	2 cut(s)	393, 566
HinP1I	GCGC	2 cut(s)	393, 566
HinfI	GANTC	2 cut(s)	106, 411
HpaII	CCGG	5 cut(s)	39, 120, 130, 137, 188
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188III	TCNNGA	2 cut(s)	59, 344
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	290, 406, 473, 658
HpyCH4III	ACNGT	4 cut(s)	22, 55, 103, 199
HpyCH4IV	ACGT	2 cut(s)	92, 206
HpyCH4V	TGCA	4 cut(s)	87, 408, 442, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	3 cut(s)	315, 345, 611
HpySE526I	ACGT	2 cut(s)	92, 206
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	2 cut(s)	393, 566
Kzo9I	GATC	2 cut(s)	385, 621
LmnI	GCTCC	3 cut(s)	41, 121, 523
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	2 cut(s)	249, 627
MaeII	ACGT	2 cut(s)	92, 206
MaeIII	GTNAC	3 cut(s)	24, 41, 376
MalI	GATC	2 cut(s)	387, 623
MboI	GATC	2 cut(s)	385, 621
MboII	GAAGA	1 cut(s)	330
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	288, 369
MnlI	CCTC	6 cut(s)	55, 90, 173, 184, 295, 340
MspI	CCGG	5 cut(s)	39, 120, 130, 137, 188
MspR9I	CCNGG	3 cut(s)	120, 242, 587
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	242, 587
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	385, 621
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	24
NsbI	TGCGCA	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	106, 411
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	93
PmlI	CACGTG	1 cut(s)	93
Ppu21I	YACGTR	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	240, 585
PspCI	CACGTG	1 cut(s)	93
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	240, 585
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	196, 286, 437
RsaNI	GTAC	3 cut(s)	195, 285, 436
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	385, 621
Sau96I	GGNCC	1 cut(s)	355
ScrFI	CCNGG	3 cut(s)	120, 242, 587
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	8 cut(s)	95, 118, 165, 209, 364, 517, 556, 617
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	2 cut(s)	406, 594
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	2 cut(s)	288, 369
SsiI	CCGC	3 cut(s)	49, 176, 219
SspMI	CTAG	2 cut(s)	249, 627
StyD4I	CCNGG	3 cut(s)	118, 240, 585
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	4 cut(s)	22, 55, 103, 199
TaiI	ACGT	2 cut(s)	95, 209
TaqI	TCGA	2 cut(s)	69, 231
TasI	AATT	2 cut(s)	288, 369
TatI	WGTACW	2 cut(s)	284, 435
TfiI	GAWTC	2 cut(s)	106, 411
TscAI	CASTG	2 cut(s)	106, 545
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	298, 484, 547
TspRI	CASTG	2 cut(s)	106, 545
Van91I	CCANNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	2 cut(s)	249, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.