Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004453

Physical Location & Seq

Genomic Coordinates Reverse (-)

24842597 .. 24845680

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G263600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGGCCTTTCTGCTAAGGGTGGCACAGGACGGCTCCGGCGACTACCGGACGGTGCAGGAAGCCATAGATGCCGTCCCTCTTTGCAACACGCGTCGCACTTTGATTCGTGTCTCTCCCGGCATCTACAGGCAGCCCGTGTACGTACCCAAGACGAAGAATCTCATCACTCTCGCTGGTCTGGCTCCTGAGCTCACTGTGCTCACCTGGAACAACACCGCCACCAAAATTGAGCACCACCAGGCTTCTCGTGTGATTGGAACTGGGACTTTCGGGTGTGGGACAACTATTGTGGAAGGAGAGGACTTTATTGCCGAGAACATCACCTTTGAGAACTCTTCTCCTGAGGGTTCAGGCCAAGCTGTGGCGATTAGAGTAACAGCTGATCGATGTGCCTTCTATAATTGCAGGTTCCTTGGATGGCAGGATACCCTGTACTTGCATTATGGAAAGCAGTATCTGAAAGATTGCTATGTTGAGGGAAGTGTTGACTTCATTTTCGGCAATAGCACAGCTCTTCTGGAGAATTGTCATATCCATTGCAAGGGAGCAGGCTTCATAACTGCACAAAGCAGGAAATCTTCCCAGGAGACAACAGGATATGTATTCTTAAGATGTGTAATCACTGGAAATGGAGGGACTTCTTATGCACATCTGGGACGGCCGTGGGGACCTTTTGGAAGAGTGGTCTTTGCGTATACATTTATGGATGGGTGCATCAGACATGTTGGCTGGAATAATTGGGGTAAAACAGAGAATGAAAGAAGCGCATGCTTTTATGAATACAGGTGTTTTGGACCAGGGAGTTGCCCATCAAAACGGGTGACATGGGCTAGAGAACTGTTAGATGAGGAAGCAGTCCAGTTCCTCCAGCATGGTTTCATTGACCCAGATCCAGAAAGGCCGTGGCTTGCTCAGAGGATGGCGCTAAGAATACCATATTCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

317

Amino Acids

35.32

Weight (kDa)

7.53

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29090
fragaria_vesca	FvH4_1g06980 FvH4_6g48010
malus_domestica	MD09G1054900.v1.1 MD17G1053000.v1.1
prunus_persica	Prupe.3G263600_v2.0.a1 Prupe.3G263600_v2.0.a1
pyrus_communis	pycom111g04620 pycom17g05100
rosa_chinensis	RchiOBHm_Chr2g0092931 RchiOBHm_Chr2g0167301
rosa_laevigata	RLG00000016350 RLG00000021705 RLG00000021733
rosa_multiflora	Rmu_sc0001840.1_g000018 Rmu_sc0014009.1_g000002 Rmu_sc0014204.1_g000002 Rmu_sc0038920.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083630 Rroxscaffold_2G00148700
rosa_rugosa	Rorug02G0030300 Rorug02G0529300
rosa_samantha	Rh2AG076400 Rh2AG596300 Rh2BG077700 Rh2BG607700 Rh2CG079900 Rh2CG578400 Rh2DG075000 Rh2DG619100
rosa_wichuraiana	Rw2G006980 Rw2G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	698
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	5, 219
AclWI	GGATC	1 cut(s)	887
AcoI	YGGCCR	1 cut(s)	662
AfaI	GTAC	3 cut(s)	143, 147, 437
AfiI	CCNNNNNNNGG	2 cut(s)	364, 544
AflII	CTTAAG	1 cut(s)	610
AflIII	ACRYGT	2 cut(s)	92, 724
AjnI	CCWGG	4 cut(s)	206, 240, 585, 799
AluBI	AGCT	4 cut(s)	193, 362, 383, 515
AluI	AGCT	4 cut(s)	193, 362, 383, 515
Alw21I	GWGCWC	3 cut(s)	195, 204, 237
Alw26I	GTCTC	2 cut(s)	118, 584
AlwI	GGATC	1 cut(s)	887
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	4 cut(s)	6, 355, 662, 902
ApeKI	GCWGC	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspLEI	GCGC	2 cut(s)	770, 928
AspS9I	GGNCC	2 cut(s)	671, 797
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	3 cut(s)	196, 316, 835
AvaII	GGWCC	2 cut(s)	671, 797
AxyI	CCTNAGG	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	195
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	3 cut(s)	195, 204, 237
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	4 cut(s)	414, 704, 820, 916
BceAI	ACGGC	5 cut(s)	49, 59, 649, 677, 889
BciT130I	CCWGG	4 cut(s)	208, 242, 587, 801
BciVI	GTATCC	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	118, 584
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	929
BfrI	CTTAAG	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	6, 134
BlsI	GCNGC	2 cut(s)	7, 135
Bme1390I	CCNGG	5 cut(s)	120, 208, 242, 587, 801
Bme18I	GGWCC	2 cut(s)	671, 797
BmgT120I	GGNCC	2 cut(s)	671, 797
BmiI	GGNNCC	4 cut(s)	37, 186, 413, 672
BmrFI	CCNGG	5 cut(s)	120, 208, 242, 587, 801
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	3 cut(s)	61, 132, 726
BmuI	ACTGGG	1 cut(s)	273
BpmI	CTGGAG	2 cut(s)	542, 854
Bpu10I	CCTNAGC	2 cut(s)	17, 189
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	388
BsaAI	YACGTR	1 cut(s)	145
BsaJI	CCNNGG	5 cut(s)	415, 585, 665, 800, 905
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 544
Bse1I	ACTGG	3 cut(s)	268, 631, 862
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	4 cut(s)	208, 242, 587, 801
BseCI	ATCGAT	1 cut(s)	388
BseDI	CCNNGG	5 cut(s)	415, 585, 665, 800, 905
BseGI	GGATG	3 cut(s)	425, 715, 927
BseLI	CCNNNNNNNGG	2 cut(s)	364, 544
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	3 cut(s)	180, 336, 929
BseNI	ACTGG	3 cut(s)	268, 631, 862
BseX3I	CGGCCG	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	2 cut(s)	77, 549
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	665
BshFI	GGCC	4 cut(s)	8, 357, 664, 904
BshVI	ATCGAT	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	665
BsiHKAI	GWGCWC	3 cut(s)	195, 204, 237
BsiSI	CCGG	3 cut(s)	39, 49, 120
BslFI	GGGAC	6 cut(s)	62, 280, 295, 652, 672, 684
BslI	CCNNNNNNNGG	2 cut(s)	364, 544
BsmAI	GTCTC	2 cut(s)	118, 584
BsmFI	GGGAC	6 cut(s)	62, 280, 295, 652, 672, 684
BsnI	GGCC	4 cut(s)	8, 357, 664, 904
Bsp1286I	GDGCHC	3 cut(s)	195, 204, 237
Bsp143I	GATC	2 cut(s)	385, 892
BspACI	CCGC	2 cut(s)	5, 219
BspANI	GGCC	4 cut(s)	8, 357, 664, 904
BspCNI	CTCAG	3 cut(s)	181, 337, 928
BspDI	ATCGAT	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	4 cut(s)	37, 186, 413, 672
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	887
BspQI	GCTCTTC	1 cut(s)	522
BspTI	CTTAAG	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	538
BsrI	ACTGG	3 cut(s)	268, 631, 862
BssECI	CCNNGG	5 cut(s)	415, 585, 665, 800, 905
BssMI	GATC	2 cut(s)	385, 892
BssNAI	GTATAC	1 cut(s)	699
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	699
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	4 cut(s)	208, 242, 587, 801
Bst4CI	ACNGT	3 cut(s)	55, 199, 843
Bst6I	CTCTTC	3 cut(s)	343, 522, 676
BstAFI	CTTAAG	1 cut(s)	610
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	553, 772, 912
BstDEI	CTNAG	5 cut(s)	17, 189, 345, 915, 929
BstDSI	CCRYGG	2 cut(s)	665, 905
BstF5I	GGATG	3 cut(s)	425, 715, 927
BstFNI	CGCG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	929
BstHHI	GCGC	2 cut(s)	770, 928
BstKTI	GATC	2 cut(s)	388, 895
BstMAI	GTCTC	2 cut(s)	118, 584
BstMBI	GATC	2 cut(s)	385, 892
BstMCI	CGRYCG	1 cut(s)	665
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 182, 199
BstNI	CCWGG	4 cut(s)	208, 242, 587, 801
BstNSI	RCATGY	2 cut(s)	728, 774
BstSCI	CCNGG	5 cut(s)	118, 206, 240, 585, 799
BstSFI	CTRYAG	1 cut(s)	127
BstSNI	TACGTA	1 cut(s)	145
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BstZ17I	GTATAC	1 cut(s)	699
BstZI	CGGCCG	1 cut(s)	662
Bsu15I	ATCGAT	1 cut(s)	388
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	4 cut(s)	8, 357, 664, 904
BsuTUI	ATCGAT	1 cut(s)	388
BtgI	CCRYGG	2 cut(s)	665, 905
BtsCI	GGATG	3 cut(s)	425, 715, 927
BtsIMutI	CAGTG	2 cut(s)	195, 624
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	553, 772, 912
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	2 cut(s)	770, 928
Cfr13I	GGNCC	2 cut(s)	671, 797
ClaI	ATCGAT	1 cut(s)	388
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	142, 146, 436
CspCI	CAANNNNNGTGG	4 cut(s)	211, 246, 273, 308
CviAII	CATG	4 cut(s)	725, 771, 828, 875
CviQI	GTAC	3 cut(s)	142, 146, 436
DdeI	CTNAG	5 cut(s)	17, 189, 345, 915, 929
DpnI	GATC	2 cut(s)	387, 894
DpnII	GATC	2 cut(s)	385, 892
EaeI	YGGCCR	1 cut(s)	662
EagI	CGGCCG	1 cut(s)	662
Eam1104I	CTCTTC	3 cut(s)	343, 522, 676
EarI	CTCTTC	3 cut(s)	343, 522, 676
Ecl136II	GAGCTC	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	662
Eco105I	TACGTA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	671, 797
Eco52I	CGGCCG	1 cut(s)	662
Eco53kI	GAGCTC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRII	CCWGG	4 cut(s)	206, 240, 585, 799
EcoT14I	CCWWGG	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	4 cut(s)	728, 774, 831, 878
FaqI	GGGAC	6 cut(s)	62, 280, 295, 652, 672, 684
FatI	CATG	4 cut(s)	724, 770, 827, 874
FblI	GTMKAC	1 cut(s)	698
Fnu4HI	GCNGC	2 cut(s)	6, 134
FokI	GGATG	3 cut(s)	432, 722, 934
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	6, 134
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	2 cut(s)	769, 927
GluI	GCNGC	2 cut(s)	6, 134
GsuI	CTGGAG	2 cut(s)	542, 854
HaeII	RGCGCY	1 cut(s)	929
HaeIII	GGCC	4 cut(s)	8, 357, 664, 904
HapII	CCGG	3 cut(s)	39, 49, 120
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	770, 928
Hin1II	CATG	4 cut(s)	728, 774, 831, 878
Hin6I	GCGC	2 cut(s)	768, 926
HinP1I	GCGC	2 cut(s)	768, 926
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	2 cut(s)	106, 160
HpaII	CCGG	3 cut(s)	39, 49, 120
HphI	GGTGA	3 cut(s)	196, 316, 835
Hpy166II	GTNNAC	3 cut(s)	142, 490, 699
Hpy188I	TCNGA	3 cut(s)	462, 722, 918
Hpy188III	TCNNGA	4 cut(s)	188, 344, 521, 896
Hpy8I	GTNNAC	3 cut(s)	142, 490, 699
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	290, 406
HpyCH4III	ACNGT	3 cut(s)	55, 199, 843
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	8 cut(s)	58, 87, 408, 442, 543, 566, 650, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 182, 199
HpyF3I	CTNAG	5 cut(s)	17, 189, 345, 915, 929
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	728, 774, 831, 878
HspAI	GCGC	2 cut(s)	768, 926
Kzo9I	GATC	2 cut(s)	385, 892
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	41, 190, 548
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	3 cut(s)	61, 132, 726
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	376, 823
MalI	GATC	2 cut(s)	387, 894
MboI	GATC	2 cut(s)	385, 892
MboII	GAAGA	5 cut(s)	169, 330, 509, 573, 693
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	3 cut(s)	195, 204, 237
MluCI	AATT	4 cut(s)	228, 403, 526, 739
MluI	ACGCGT	1 cut(s)	92
MnlI	CCTC	8 cut(s)	90, 295, 340, 472, 629, 844, 878, 912
MseI	TTAA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	610
MspI	CCGG	3 cut(s)	39, 49, 120
MspR9I	CCNGG	5 cut(s)	120, 208, 242, 587, 801
MvaI	CCWGG	4 cut(s)	208, 242, 587, 801
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	71, 182, 199
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	385, 892
NlaIII	CATG	4 cut(s)	728, 774, 831, 878
NlaIV	GGNNCC	4 cut(s)	37, 186, 413, 672
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	823
NspI	RCATGY	2 cut(s)	728, 774
PaeI	GCATGC	1 cut(s)	774
PciI	ACATGT	1 cut(s)	724
PciSI	GCTCTTC	1 cut(s)	522
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	106, 160
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	2 cut(s)	7, 135
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	671
PscI	ACATGT	1 cut(s)	724
Psp124BI	GAGCTC	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	671
Psp6I	CCWGG	4 cut(s)	206, 240, 585, 799
PspGI	CCWGG	4 cut(s)	206, 240, 585, 799
PspN4I	GGNNCC	4 cut(s)	37, 186, 413, 672
PspPI	GGNCC	2 cut(s)	671, 797
PspPPI	RGGWCCY	1 cut(s)	671
PstNI	CAGNNNCTG	1 cut(s)	460
PsuI	RGATCY	1 cut(s)	892
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	3 cut(s)	143, 147, 437
RsaNI	GTAC	3 cut(s)	142, 146, 436
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	1 cut(s)	611
SatI	GCNGC	2 cut(s)	6, 134
Sau3AI	GATC	2 cut(s)	385, 892
Sau96I	GGNCC	2 cut(s)	671, 797
ScrFI	CCNGG	5 cut(s)	120, 208, 242, 587, 801
SduI	GDGCHC	3 cut(s)	195, 204, 237
SfaNI	GCATC	3 cut(s)	61, 132, 726
SfcI	CTRYAG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	671, 797
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
SnaBI	TACGTA	1 cut(s)	145
SphI	GCATGC	1 cut(s)	774
Sse9I	AATT	4 cut(s)	228, 403, 526, 739
SsiI	CCGC	2 cut(s)	5, 219
SspMI	CTAG	1 cut(s)	834
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	5 cut(s)	118, 206, 240, 585, 799
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	55, 199, 843
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	388
TasI	AATT	4 cut(s)	228, 403, 526, 739
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	106, 160
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	2 cut(s)	202, 631
TseFI	GTSAC	1 cut(s)	823
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	823
TspDTI	ATGAA	5 cut(s)	484, 547, 774, 795, 871
TspRI	CASTG	2 cut(s)	202, 631
Van91I	CCANNNNNTGG	1 cut(s)	364
Vha464I	CTTAAG	1 cut(s)	610
VpaK11BI	GGWCC	2 cut(s)	671, 797
XceI	RCATGY	2 cut(s)	728, 774
XcmI	CCANNNNNNNNNTGG	1 cut(s)	903
XmiI	GTMKAC	1 cut(s)	698
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.