Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014009.1

Orthogroup ID

OG0004453

Physical Location & Seq

Genomic Coordinates Reverse (-)

15279 .. 18486

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014009.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atgtcggcctatgtgataaccgtgtcacaggacggctccggtaaccaccgcaccgttcaggaggccatcgacgccgtgcctctctgcaacacgtgtcgcactgtgattcgtatagctcccggcatctaccggcagccggtgtatgtccccaagaccaagaacctcatcacactcgcgggtctgcgaccggagggtactgtgctgacgtggaacaacaccgccaccaaaatcgagcaccaccaggtgaggcaaggagtttttggtgctaccccagttgggtttgtgacacgtgtggcgctgaggggttttgggtttttgttgcaggcttctagggtgattgggactgggacttttggatgtgggagtacaattgtggaaggagaggacttcattgctgagaatatcacttttgagaactcttctcctgagggttcgggccaagctgtggcaattagagtaacggctgatcggtgcgccttctataactgcagattccttggatggcaggataccctgtacttgcattatggaaagcagtatttgaaagattgttatattgaaggaagtgtagacttcattttcggtaatagcacagctcttttggagcattgtcatatccactgcaagtcagcaggtttcataactgcgcaaagcaggaaatcatcccaggagactacaggatatgtgttcctaaggtgtgtaataactggaaatggaggtgctccatacgcatttctgggacgaccatggggaccttttggaagagtggtctttgcatttacatatatggatgcatgcatcaaacatgtaggctggaataattggggtaaaacagagaatgaaagaagcgcttgcttttacgaatacaggtgttttggaccgggtagttgcccatcaaaacgagtgacatgggctagagaactggtagatgaggaagcagaccagttcctcaagcatggttacatcgacccagacccccaaagaccttggcttgctcagagaatggccctaagaataccatattctgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

343

Amino Acids

38.15

Weight (kDa)

8.52

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29090
fragaria_vesca	FvH4_1g06980 FvH4_6g48010
malus_domestica	MD09G1054900.v1.1 MD17G1053000.v1.1
prunus_persica	Prupe.3G263600_v2.0.a1 Prupe.3G263600_v2.0.a1
pyrus_communis	pycom111g04620 pycom17g05100
rosa_chinensis	RchiOBHm_Chr2g0092931 RchiOBHm_Chr2g0167301
rosa_laevigata	RLG00000016350 RLG00000021705 RLG00000021733
rosa_multiflora	Rmu_sc0001840.1_g000018 Rmu_sc0014009.1_g000002 Rmu_sc0014204.1_g000002 Rmu_sc0038920.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083630 Rroxscaffold_2G00148700
rosa_rugosa	Rorug02G0030300 Rorug02G0529300
rosa_samantha	Rh2AG076400 Rh2AG596300 Rh2BG077700 Rh2BG607700 Rh2CG079900 Rh2CG578400 Rh2DG075000 Rh2DG619100
rosa_wichuraiana	Rw2G006980 Rw2G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	648
Acc36I	ACCTGC	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	1 cut(s)	176
AciI	CCGC	3 cut(s)	49, 176, 219
AcvI	CACGTG	2 cut(s)	93, 290
AcyI	GRCGYC	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	3 cut(s)	196, 367, 518
AfeI	AGCGCT	1 cut(s)	850
AfiI	CCNNNNNNNGG	3 cut(s)	136, 276, 445
AflIII	ACRYGT	5 cut(s)	90, 92, 287, 289, 805
AgsI	TTSAA	2 cut(s)	544, 560
AjiI	CACGTC	1 cut(s)	207
AjnI	CCWGG	2 cut(s)	240, 666
AluBI	AGCT	3 cut(s)	116, 443, 596
AluI	AGCT	3 cut(s)	116, 443, 596
Alw21I	GWGCWC	2 cut(s)	237, 724
Alw26I	GTCTC	1 cut(s)	665
Aor51HI	AGCGCT	1 cut(s)	850
AoxI	GGCC	4 cut(s)	6, 63, 436, 1005
ApeKI	GCWGC	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	563, 595
AspLEI	GCGC	4 cut(s)	298, 476, 649, 851
AspS9I	GGNCC	4 cut(s)	436, 752, 878, 1006
AsuC2I	CCSGG	2 cut(s)	120, 882
AsuHPI	GGTGA	2 cut(s)	256, 346
AvaII	GGWCC	2 cut(s)	752, 878
AxyI	CCTNAGG	2 cut(s)	426, 692
BbrPI	CACGTG	2 cut(s)	93, 290
Bbv12I	GWGCWC	2 cut(s)	237, 724
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	3 cut(s)	74, 495, 901
BceAI	ACGGC	3 cut(s)	49, 59, 477
BciT130I	CCWGG	2 cut(s)	242, 668
BciVI	GTATCC	1 cut(s)	502
BcnI	CCSGG	2 cut(s)	120, 882
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	2 cut(s)	330, 915
BfmI	CTRYAG	2 cut(s)	487, 675
BfoI	RGCGCY	2 cut(s)	299, 852
BfuAI	ACCTGC	1 cut(s)	623
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	4 cut(s)	120, 242, 668, 882
Bme18I	GGWCC	2 cut(s)	752, 878
BmgBI	CACGTC	1 cut(s)	207
BmgT120I	GGNCC	4 cut(s)	436, 752, 878, 1006
BmiI	GGNNCC	2 cut(s)	37, 753
BmrFI	CCNGG	4 cut(s)	120, 242, 668, 882
BmrI	ACTGGG	2 cut(s)	266, 354
BmsI	GCATC	3 cut(s)	132, 781, 807
BmuI	ACTGGG	2 cut(s)	266, 354
Bpu10I	CCTNAGC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	935
BpuMI	CCSGG	2 cut(s)	120, 882
BsaAI	YACGTR	2 cut(s)	93, 290
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	496, 666, 746, 986
BsaWI	WCCGGW	2 cut(s)	38, 187
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 276, 445
Bse118I	RCCGGY	2 cut(s)	129, 136
Bse1I	ACTGG	5 cut(s)	272, 349, 712, 927, 943
Bse21I	CCTNAGG	2 cut(s)	426, 692
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	242, 668
BseDI	CCNNGG	4 cut(s)	496, 666, 746, 986
BseGI	GGATG	4 cut(s)	362, 506, 662, 796
BseLI	CCNNNNNNNGG	3 cut(s)	136, 276, 445
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	4 cut(s)	290, 387, 417, 1010
BseNI	ACTGG	5 cut(s)	272, 349, 712, 927, 943
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	4 cut(s)	8, 65, 438, 1007
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	2 cut(s)	237, 724
BsiSI	CCGG	6 cut(s)	39, 120, 130, 137, 188, 881
BslFI	GGGAC	5 cut(s)	131, 355, 361, 753, 765
BslI	CCNNNNNNNGG	3 cut(s)	136, 276, 445
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	5 cut(s)	131, 355, 361, 753, 765
BsnI	GGCC	4 cut(s)	8, 65, 438, 1007
Bsp1286I	GDGCHC	2 cut(s)	237, 724
Bsp143I	GATC	1 cut(s)	466
Bsp19I	CCATGG	1 cut(s)	746
BspACI	CCGC	3 cut(s)	49, 176, 219
BspANI	GGCC	4 cut(s)	8, 65, 438, 1007
BspCNI	CTCAG	4 cut(s)	291, 388, 418, 1009
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	2 cut(s)	37, 753
BspMAI	CTGCAG	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	2 cut(s)	129, 136
BsrI	ACTGG	5 cut(s)	272, 349, 712, 927, 943
BssAI	RCCGGY	2 cut(s)	129, 136
BssECI	CCNNGG	4 cut(s)	496, 666, 746, 986
BssMI	GATC	1 cut(s)	466
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	3 cut(s)	496, 746, 986
Bst2UI	CCWGG	2 cut(s)	242, 668
Bst4CI	ACNGT	4 cut(s)	22, 55, 103, 199
Bst6I	CTCTTC	2 cut(s)	424, 757
BstACI	GRCGYC	1 cut(s)	72
BstBAI	YACGTR	2 cut(s)	93, 290
BstC8I	GCNNGC	4 cut(s)	324, 796, 853, 993
BstDEI	CTNAG	6 cut(s)	299, 396, 426, 692, 996, 1010
BstDSI	CCRYGG	1 cut(s)	746
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	4 cut(s)	362, 506, 662, 796
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	2 cut(s)	299, 852
BstHHI	GCGC	4 cut(s)	298, 476, 649, 851
BstKTI	GATC	1 cut(s)	469
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	1 cut(s)	466
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 728
BstNI	CCWGG	2 cut(s)	242, 668
BstNSI	RCATGY	2 cut(s)	798, 809
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	4 cut(s)	118, 240, 666, 880
BstSFI	CTRYAG	2 cut(s)	487, 675
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	145
Bsu36I	CCTNAGG	2 cut(s)	426, 692
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	8, 65, 438, 1007
BtgI	CCRYGG	1 cut(s)	746
BtrI	CACGTC	1 cut(s)	207
BtsCI	GGATG	4 cut(s)	362, 506, 662, 796
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	2 cut(s)	99, 619
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	4 cut(s)	324, 796, 853, 993
CfoI	GCGC	4 cut(s)	298, 476, 649, 851
Cfr10I	RCCGGY	2 cut(s)	129, 136
Cfr13I	GGNCC	4 cut(s)	436, 752, 878, 1006
CseI	GACGC	1 cut(s)	80
CsiI	ACCWGGT	1 cut(s)	240
Csp6I	GTAC	3 cut(s)	195, 366, 517
CviAII	CATG	5 cut(s)	747, 795, 806, 909, 956
CviQI	GTAC	3 cut(s)	195, 366, 517
DdeI	CTNAG	6 cut(s)	299, 396, 426, 692, 996, 1010
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DraIII	CACNNNGTG	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	424, 757
EarI	CTCTTC	2 cut(s)	424, 757
Eco130I	CCWWGG	3 cut(s)	496, 746, 986
Eco47I	GGWCC	2 cut(s)	752, 878
Eco47III	AGCGCT	1 cut(s)	850
Eco72I	CACGTG	2 cut(s)	93, 290
Eco81I	CCTNAGG	2 cut(s)	426, 692
Eco91I	GGTNACC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	752
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	240, 666
EcoT14I	CCWWGG	3 cut(s)	496, 746, 986
EcoT22I	ATGCAT	2 cut(s)	796, 800
ErhI	CCWWGG	3 cut(s)	496, 746, 986
FaeI	CATG	5 cut(s)	750, 798, 809, 912, 959
FalI	AAGNNNNNCTT	2 cut(s)	835, 867
FaqI	GGGAC	5 cut(s)	131, 355, 361, 753, 765
FatI	CATG	5 cut(s)	746, 794, 805, 908, 955
FauI	CCCGC	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	4 cut(s)	369, 513, 649, 803
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	2 cut(s)	330, 915
FspI	TGCGCA	1 cut(s)	648
GlaI	GCGC	4 cut(s)	297, 475, 648, 850
GluI	GCNGC	1 cut(s)	134
HaeII	RGCGCY	2 cut(s)	299, 852
HaeIII	GGCC	4 cut(s)	8, 65, 438, 1007
HapII	CCGG	6 cut(s)	39, 120, 130, 137, 188, 881
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	4 cut(s)	298, 476, 649, 851
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	5 cut(s)	750, 798, 809, 912, 959
Hin6I	GCGC	4 cut(s)	296, 474, 647, 849
HinP1I	GCGC	4 cut(s)	296, 474, 647, 849
HinfI	GANTC	2 cut(s)	106, 492
HpaII	CCGG	6 cut(s)	39, 120, 130, 137, 188, 881
HphI	GGTGA	2 cut(s)	256, 346
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	1 cut(s)	999
Hpy188III	TCNNGA	2 cut(s)	59, 425
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	371, 487, 554
HpyCH4III	ACNGT	4 cut(s)	22, 55, 103, 199
HpyCH4IV	ACGT	3 cut(s)	92, 206, 289
HpyCH4V	TGCA	9 cut(s)	87, 322, 489, 523, 624, 776, 794, 798, 1028
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 728
HpyF3I	CTNAG	6 cut(s)	299, 396, 426, 692, 996, 1010
HpySE526I	ACGT	3 cut(s)	92, 206, 289
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	750, 798, 809, 912, 959
HspAI	GCGC	4 cut(s)	296, 474, 647, 849
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	4 cut(s)	41, 121, 604, 727
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	3 cut(s)	132, 781, 807
MabI	ACCWGGT	1 cut(s)	240
MaeI	CTAG	2 cut(s)	330, 915
MaeII	ACGT	3 cut(s)	92, 206, 289
MaeIII	GTNAC	6 cut(s)	24, 41, 283, 457, 904, 959
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	2 cut(s)	411, 774
MfeI	CAATTG	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	237, 724
MluCI	AATT	3 cut(s)	369, 450, 820
Mph1103I	ATGCAT	2 cut(s)	796, 800
MspI	CCGG	6 cut(s)	39, 120, 130, 137, 188, 881
MspR9I	CCNGG	4 cut(s)	120, 242, 668, 882
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	2 cut(s)	242, 668
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	71, 728
NciI	CCSGG	2 cut(s)	120, 882
NcoI	CCATGG	1 cut(s)	746
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	5 cut(s)	750, 798, 809, 912, 959
NlaIV	GGNNCC	2 cut(s)	37, 753
NmuCI	GTSAC	3 cut(s)	24, 283, 904
NsbI	TGCGCA	1 cut(s)	648
NsiI	ATGCAT	2 cut(s)	796, 800
NspI	RCATGY	2 cut(s)	798, 809
PaeI	GCATGC	1 cut(s)	798
PciI	ACATGT	1 cut(s)	805
PfeI	GAWTC	2 cut(s)	106, 492
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	1 cut(s)	135
PmaCI	CACGTG	2 cut(s)	93, 290
PmlI	CACGTG	2 cut(s)	93, 290
Ppu21I	YACGTR	2 cut(s)	93, 290
PpuMI	RGGWCCY	1 cut(s)	752
PscI	ACATGT	1 cut(s)	805
Psp5II	RGGWCCY	1 cut(s)	752
Psp6I	CCWGG	2 cut(s)	240, 666
PspCI	CACGTG	2 cut(s)	93, 290
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	2 cut(s)	240, 666
PspN4I	GGNNCC	2 cut(s)	37, 753
PspPI	GGNCC	4 cut(s)	436, 752, 878, 1006
PspPPI	RGGWCCY	1 cut(s)	752
PstI	CTGCAG	1 cut(s)	491
RsaI	GTAC	3 cut(s)	196, 367, 518
RsaNI	GTAC	3 cut(s)	195, 366, 517
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	4 cut(s)	436, 752, 878, 1006
ScrFI	CCNGG	4 cut(s)	120, 242, 668, 882
SduI	GDGCHC	2 cut(s)	237, 724
SexAI	ACCWGGT	1 cut(s)	240
SfaNI	GCATC	3 cut(s)	132, 781, 807
SfcI	CTRYAG	2 cut(s)	487, 675
SinI	GGWCC	2 cut(s)	752, 878
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	3 cut(s)	369, 450, 820
SsiI	CCGC	3 cut(s)	49, 176, 219
SspMI	CTAG	2 cut(s)	330, 915
StyD4I	CCNGG	4 cut(s)	118, 240, 666, 880
StyI	CCWWGG	3 cut(s)	496, 746, 986
TaaI	ACNGT	4 cut(s)	22, 55, 103, 199
TaiI	ACGT	3 cut(s)	95, 209, 292
TaqI	TCGA	3 cut(s)	69, 231, 966
TasI	AATT	3 cut(s)	369, 450, 820
TatI	WGTACW	2 cut(s)	365, 516
TfiI	GAWTC	2 cut(s)	106, 492
TscAI	CASTG	2 cut(s)	106, 626
TseFI	GTSAC	3 cut(s)	24, 283, 904
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	3 cut(s)	24, 283, 904
TspDTI	ATGAA	4 cut(s)	379, 565, 628, 855
TspRI	CASTG	2 cut(s)	106, 626
Van91I	CCANNNNNTGG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	752, 878
XceI	RCATGY	2 cut(s)	798, 809
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	2 cut(s)	330, 915
Zsp2I	ATGCAT	2 cut(s)	796, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.