Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004453

Physical Location & Seq

Genomic Coordinates Forward (+)

6287184 .. 6290476

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCGGCCTATGTAACCGTGTCACAGGACGGCTCCGGTGACTACCGCACCGTACAGGAGGCCATCGATGCCGTGCCTCTCTGCAACACGTGTCGCACTGTGATTCGTATAGCTCCCGGCATCTACCGGCAGCCGGTGTATGTCCCCAAGACCAAGAACCTCATCACACTCGCGGGTCTGCGACCGGAGGATACTGTGCTGACGTGGAACAACACCGCCACCAAAATCGAGCACCACCAGGGTGATTGGGACTGGGACTTTTGGATGTGGGGAGTACAATTGTGGAAGGAGAGGACTTCATTGCTGAGAATATCACTTTTGAGAACTCTTCTCCTGAGTTGTTCATTTGGTGGTTCGGGCCAAGCTGTGGCAATTAGAGTAACAGCTGATCGGTGCGCCTTCTATAACTGCAGATTCCTTGGATGGCAGGATACCCTGTACTTGCATTATGGAAAGCAGTATTTGAAAGATTGTTATATTGAAGGAAGTGTAGACTTCATTTTTGGTAATAGCACAGCTCTTTTGGAGCATTGTCATATCCACTGCAAGTCAGCAGGTTTCATAACTGCACAAAGCAGGAAATCATCCCAGGAGACTACAGGATATGTGTTCCTAAGGTGTGTAATAACTGGAAATGGAGGTACTCCATACGCATTTCTGGGACGACCATGGGGGCCTTTTGGAAGAGTGGTCTTTGCATTTACATATATGGATGCATGCATCAAACATGTAGGCTGGAATAATTGGGGTAAAACAGAGAATGAAAGAAGCGCTTGCTTTTACGAATACAGGTGTTTTGGACCGGGTAGTTGCCCATCAAAACGAGTGACATGGGCTAGAGAACTGGTAGATGAGGAAGCAGACCAGTTCCTCAAGCATGGTTACATCGACCCAGACCCCCAAAGACCTTGGCTTGTTCAGAGAATGGCCCTAAGAATACCATATTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010393 GO:0016787 GO:0016788 GO:0017144 GO:0030599 GO:0042742 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045488 GO:0050829 GO:0050896 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Pectinesterase

Protein Analysis

317

Amino Acids

36.18

Weight (kDa)

8.51

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pectinesterase	PF01095	5 - 71	2e-11	Pectinesterase
Pectinesterase	PF01095	119 - 297	1.7e-48	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004453)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29090
fragaria_vesca	FvH4_1g06980 FvH4_6g48010
malus_domestica	MD09G1054900.v1.1 MD17G1053000.v1.1
prunus_persica	Prupe.3G263600_v2.0.a1 Prupe.3G263600_v2.0.a1
pyrus_communis	pycom111g04620 pycom17g05100
rosa_chinensis	RchiOBHm_Chr2g0092931 RchiOBHm_Chr2g0167301
rosa_laevigata	RLG00000016350 RLG00000021705 RLG00000021733
rosa_multiflora	Rmu_sc0001840.1_g000018 Rmu_sc0014009.1_g000002 Rmu_sc0014204.1_g000002 Rmu_sc0038920.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083630 Rroxscaffold_2G00148700
rosa_rugosa	Rorug02G0030300 Rorug02G0529300
rosa_samantha	Rh2AG076400 Rh2AG596300 Rh2BG077700 Rh2BG607700 Rh2CG079900 Rh2CG578400 Rh2DG075000 Rh2DG619100
rosa_wichuraiana	Rw2G006980 Rw2G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
AccB7I	CCANNNNNTGG	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	46, 173, 216
AcvI	CACGTG	1 cut(s)	90
AfaI	GTAC	4 cut(s)	54, 276, 440, 643
AfeI	AGCGCT	1 cut(s)	772
AfiI	CCNNNNNNNGG	2 cut(s)	133, 367
AflIII	ACRYGT	3 cut(s)	87, 89, 727
AgsI	TTSAA	2 cut(s)	466, 482
AjiI	CACGTC	1 cut(s)	204
AjnI	CCWGG	2 cut(s)	237, 588
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	4 cut(s)	113, 365, 386, 518
AluI	AGCT	4 cut(s)	113, 365, 386, 518
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	587
Aor51HI	AGCGCT	1 cut(s)	772
AoxI	GGCC	5 cut(s)	6, 60, 358, 674, 927
ApeKI	GCWGC	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AspLEI	GCGC	2 cut(s)	398, 773
AspS9I	GGNCC	4 cut(s)	358, 674, 800, 928
AsuC2I	CCSGG	2 cut(s)	117, 804
AsuHPI	GGTGA	2 cut(s)	50, 254
AvaII	GGWCC	1 cut(s)	800
AxyI	CCTNAGG	1 cut(s)	614
BbrPI	CACGTG	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	3 cut(s)	71, 417, 823
BceAI	ACGGC	2 cut(s)	46, 56
BciT130I	CCWGG	2 cut(s)	239, 590
BciVI	GTATCC	2 cut(s)	184, 424
BcnI	CCSGG	2 cut(s)	117, 804
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	1 cut(s)	837
BfmI	CTRYAG	2 cut(s)	409, 597
BfoI	RGCGCY	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	2 cut(s)	184, 424
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	4 cut(s)	117, 239, 590, 804
Bme18I	GGWCC	1 cut(s)	800
BmgBI	CACGTC	1 cut(s)	204
BmgT120I	GGNCC	4 cut(s)	358, 674, 800, 928
BmiI	GGNNCC	2 cut(s)	34, 675
BmrFI	CCNGG	4 cut(s)	117, 239, 590, 804
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	4 cut(s)	58, 129, 703, 729
BmuI	ACTGGG	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	2 cut(s)	117, 804
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	90
BsaJI	CCNNGG	5 cut(s)	238, 418, 588, 668, 908
BsaWI	WCCGGW	2 cut(s)	35, 184
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 367
Bse118I	RCCGGY	2 cut(s)	126, 133
Bse1I	ACTGG	4 cut(s)	257, 634, 849, 865
Bse21I	CCTNAGG	1 cut(s)	614
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	239, 590
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	5 cut(s)	238, 418, 588, 668, 908
BseGI	GGATG	4 cut(s)	270, 428, 584, 718
BseLI	CCNNNNNNNGG	2 cut(s)	133, 367
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	296, 326
BseNI	ACTGG	4 cut(s)	257, 634, 849, 865
BseXI	GCAGC	1 cut(s)	142
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	185
BshFI	GGCC	5 cut(s)	8, 62, 360, 676, 929
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	6 cut(s)	36, 117, 127, 134, 185, 803
BslFI	GGGAC	4 cut(s)	128, 263, 269, 675
BslI	CCNNNNNNNGG	2 cut(s)	133, 367
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	4 cut(s)	128, 263, 269, 675
BsnI	GGCC	5 cut(s)	8, 62, 360, 676, 929
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	668
BspACI	CCGC	3 cut(s)	46, 173, 216
BspANI	GGCC	5 cut(s)	8, 62, 360, 676, 929
BspCNI	CTCAG	2 cut(s)	297, 327
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	34, 675
BspMAI	CTGCAG	1 cut(s)	413
BspMI	ACCTGC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	299
BsrFI	RCCGGY	2 cut(s)	126, 133
BsrI	ACTGG	4 cut(s)	257, 634, 849, 865
BssAI	RCCGGY	2 cut(s)	126, 133
BssECI	CCNNGG	5 cut(s)	238, 418, 588, 668, 908
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	3 cut(s)	418, 668, 908
Bst2UI	CCWGG	2 cut(s)	239, 590
Bst4CI	ACNGT	4 cut(s)	19, 52, 100, 196
Bst6I	CTCTTC	2 cut(s)	333, 679
BstBAI	YACGTR	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	718, 775
BstDEI	CTNAG	4 cut(s)	305, 335, 614, 932
BstDSI	CCRYGG	1 cut(s)	668
BstF5I	GGATG	4 cut(s)	270, 428, 584, 718
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	2 cut(s)	398, 773
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	388
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	2 cut(s)	239, 590
BstNSI	RCATGY	2 cut(s)	720, 731
BstSCI	CCNGG	4 cut(s)	115, 237, 588, 802
BstSFI	CTRYAG	2 cut(s)	409, 597
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	614
BsuI	GTATCC	2 cut(s)	184, 424
BsuRI	GGCC	5 cut(s)	8, 62, 360, 676, 929
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	668
BtrI	CACGTC	1 cut(s)	204
BtsCI	GGATG	4 cut(s)	270, 428, 584, 718
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	96, 541
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	2 cut(s)	718, 775
CfoI	GCGC	2 cut(s)	398, 773
Cfr10I	RCCGGY	2 cut(s)	126, 133
Cfr13I	GGNCC	4 cut(s)	358, 674, 800, 928
ClaI	ATCGAT	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	53, 275, 439, 642
CviAII	CATG	5 cut(s)	669, 717, 728, 831, 878
CviQI	GTAC	4 cut(s)	53, 275, 439, 642
DdeI	CTNAG	4 cut(s)	305, 335, 614, 932
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	333, 679
EarI	CTCTTC	2 cut(s)	333, 679
Eco130I	CCWWGG	3 cut(s)	418, 668, 908
Eco47I	GGWCC	1 cut(s)	800
Eco47III	AGCGCT	1 cut(s)	772
Eco72I	CACGTG	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	614
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRII	CCWGG	2 cut(s)	237, 588
EcoT14I	CCWWGG	3 cut(s)	418, 668, 908
EcoT22I	ATGCAT	2 cut(s)	718, 722
ErhI	CCWWGG	3 cut(s)	418, 668, 908
FaeI	CATG	5 cut(s)	672, 720, 731, 834, 881
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FaqI	GGGAC	4 cut(s)	128, 263, 269, 675
FatI	CATG	5 cut(s)	668, 716, 727, 830, 877
FauI	CCCGC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	4 cut(s)	277, 435, 571, 725
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	837
GlaI	GCGC	2 cut(s)	397, 772
GluI	GCNGC	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	5 cut(s)	8, 62, 360, 676, 929
HapII	CCGG	6 cut(s)	36, 117, 127, 134, 185, 803
HhaI	GCGC	2 cut(s)	398, 773
Hin1II	CATG	5 cut(s)	672, 720, 731, 834, 881
Hin6I	GCGC	2 cut(s)	396, 771
HinP1I	GCGC	2 cut(s)	396, 771
HinfI	GANTC	2 cut(s)	103, 414
HpaII	CCGG	6 cut(s)	36, 117, 127, 134, 185, 803
HphI	GGTGA	2 cut(s)	50, 254
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	1 cut(s)	921
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	3 cut(s)	280, 409, 476
HpyCH4III	ACNGT	4 cut(s)	19, 52, 100, 196
HpyCH4IV	ACGT	2 cut(s)	89, 203
HpyCH4V	TGCA	9 cut(s)	84, 411, 445, 546, 569, 698, 716, 720, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	4 cut(s)	305, 335, 614, 932
HpySE526I	ACGT	2 cut(s)	89, 203
Hsp92II	CATG	5 cut(s)	672, 720, 731, 834, 881
HspAI	GCGC	2 cut(s)	396, 771
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	3 cut(s)	38, 118, 526
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	4 cut(s)	58, 129, 703, 729
MaeI	CTAG	1 cut(s)	837
MaeII	ACGT	2 cut(s)	89, 203
MaeIII	GTNAC	6 cut(s)	13, 21, 38, 379, 826, 881
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	2 cut(s)	320, 696
MfeI	CAATTG	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	278, 372, 742
MnlI	CCTC	8 cut(s)	52, 87, 170, 181, 285, 632, 847, 881
Mph1103I	ATGCAT	2 cut(s)	718, 722
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	6 cut(s)	36, 117, 127, 134, 185, 803
MspR9I	CCNGG	4 cut(s)	117, 239, 590, 804
MunI	CAATTG	1 cut(s)	278
MvaI	CCWGG	2 cut(s)	239, 590
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	2 cut(s)	117, 804
NcoI	CCATGG	1 cut(s)	668
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	5 cut(s)	672, 720, 731, 834, 881
NlaIV	GGNNCC	2 cut(s)	34, 675
NmuCI	GTSAC	3 cut(s)	21, 38, 826
NsiI	ATGCAT	2 cut(s)	718, 722
NspI	RCATGY	2 cut(s)	720, 731
OliI	CACNNNNGTG	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	720
PciI	ACATGT	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	103, 414
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	132
PmaCI	CACGTG	1 cut(s)	90
PmlI	CACGTG	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	90
PscI	ACATGT	1 cut(s)	727
Psp6I	CCWGG	2 cut(s)	237, 588
PspCI	CACGTG	1 cut(s)	90
PspGI	CCWGG	2 cut(s)	237, 588
PspN4I	GGNNCC	2 cut(s)	34, 675
PspPI	GGNCC	4 cut(s)	358, 674, 800, 928
PstI	CTGCAG	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	4 cut(s)	54, 276, 440, 643
RsaNI	GTAC	4 cut(s)	53, 275, 439, 642
RseI	CAYNNNNRTG	1 cut(s)	240
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	4 cut(s)	358, 674, 800, 928
ScrFI	CCNGG	4 cut(s)	117, 239, 590, 804
SduI	GDGCHC	1 cut(s)	234
SfaNI	GCATC	4 cut(s)	58, 129, 703, 729
SfcI	CTRYAG	2 cut(s)	409, 597
SinI	GGWCC	1 cut(s)	800
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
SphI	GCATGC	1 cut(s)	720
Sse9I	AATT	3 cut(s)	278, 372, 742
SsiI	CCGC	3 cut(s)	46, 173, 216
SspMI	CTAG	1 cut(s)	837
StyD4I	CCNGG	4 cut(s)	115, 237, 588, 802
StyI	CCWWGG	3 cut(s)	418, 668, 908
TaaI	ACNGT	4 cut(s)	19, 52, 100, 196
TaiI	ACGT	2 cut(s)	92, 206
TaqI	TCGA	3 cut(s)	66, 228, 888
TasI	AATT	3 cut(s)	278, 372, 742
TatI	WGTACW	2 cut(s)	274, 438
TfiI	GAWTC	2 cut(s)	103, 414
TscAI	CASTG	2 cut(s)	103, 548
TseFI	GTSAC	3 cut(s)	21, 38, 826
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	3 cut(s)	21, 38, 826
TspDTI	ATGAA	5 cut(s)	288, 333, 487, 550, 777
TspRI	CASTG	2 cut(s)	103, 548
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	800
XceI	RCATGY	2 cut(s)	720, 731
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	1 cut(s)	837
Zsp2I	ATGCAT	2 cut(s)	718, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.