Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006367

Physical Location & Seq

Genomic Coordinates Forward (+)

20026975 .. 20029920

Gene Structure 2946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1208600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGCCTTTTTTTTTATTATTTGTGCTATCTTTCTGAAGCTGCAAACAAGTTGCCAACCTCTTCGTCTGTCATCACTCCAATTGACTCTCTGAACTCAAACATGGCAGATAAATGGAAGCACACAGCTCTCCTTGTCATTGACATGCAGCATGATTTCATTGATGTGGATGGTCCTATGCTGATTAATGGAGGCAAAGCCATAGTTCCAAATGTAATCAAGGCGGTCCAAATCGCTAGGCAGCGTGGGATTCAAGTAGTTTGGGTTGTGCGTGAACATGATCCACTAGGAAGAGATGTTGAGCTTTTTCGCCGGCACTTATATCCGGCAGGGAAAGTAGGGCCAACTGTTAAGGGTGAGAGAGGTGCTGAACTTGTTGATGGTCTTGTGATTGAACAAGGGGACTACAAGTTGGTCAAAACCCGGTTTAGTGCATTCTTTGCTACGCACCTCGATTCGTTTCTCAAGGGTTCTGGAATTGACAGTTTGGTTGTCACTGGTGTTCAGACTCCAAATTGCATTAGGCAGACTGTGTTTGATGGCGTTGCTTTGGATTACAAGTATGTTACAGTTATTCTTGACGCCACGGCCGCTGCTACACCTGACGTACATGCTGCCAATATTTTGGACATGAAGAACATTGGAGTTGCAACACCAAGCTTACAAGAATGGAGCGAATTGGATGCTTTATCCTCTGGTTACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

236

Amino Acids

25.74

Weight (kDa)

5.84

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	42 - 217	7.1e-38	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16190
fragaria_vesca	FvH4_6g31890 FvH4_6g31890
malus_domestica	MD09G1208600.v1.1
prunus_persica	Prupe.3G064800_v2.0.a1
pyrus_communis	pycom09g12470
rosa_chinensis	RchiOBHm_Chr2g0139241 RchiOBHm_Chr2g0139251
rosa_laevigata	RLG00000019564 RLG00000019710 RLG00000019798 RLG00000019799
rosa_multiflora	Rmu_sc0001803.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105530
rosa_rugosa	Rorug02G0355800 Rorug02G0355900 Rorug02G0356000
rosa_samantha	Rh2AG405900 Rh2BG416500 Rh2BG416600 Rh2CG392100 Rh2CG392200 Rh2DG425700
rosa_wichuraiana	Rw2G032890 Rw2G032900 Rw2G033160 Rw2G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	224, 591
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	588
AcuI	CTGAAG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	582
AfaI	GTAC	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	254, 395
AluBI	AGCT	4 cut(s)	41, 128, 304, 660
AluI	AGCT	4 cut(s)	41, 128, 304, 660
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	3 cut(s)	4, 341, 588
ApeKI	GCWGC	5 cut(s)	41, 148, 241, 593, 614
AseI	ATTAAT	1 cut(s)	186
AspS9I	GGNCC	4 cut(s)	4, 173, 226, 341
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	173, 226
BbvI	GCAGC	5 cut(s)	28, 160, 253, 580, 601
BccI	CCATC	3 cut(s)	164, 374, 533
BceAI	ACGGC	1 cut(s)	603
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BcnI	CCSGG	1 cut(s)	424
BfaI	CTAG	2 cut(s)	237, 287
BisI	GCNGC	6 cut(s)	42, 149, 242, 591, 594, 615
BlsI	GCNGC	6 cut(s)	43, 150, 243, 592, 595, 616
Bme1390I	CCNGG	1 cut(s)	424
Bme18I	GGWCC	2 cut(s)	173, 226
BmgT120I	GGNCC	4 cut(s)	4, 173, 226, 341
BmrFI	CCNGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	673
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	582
BsaJI	CCNNGG	1 cut(s)	585
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	2 cut(s)	175, 688
BseNI	ACTGG	1 cut(s)	502
BseX3I	CGGCCG	1 cut(s)	588
BseXI	GCAGC	5 cut(s)	28, 160, 253, 580, 601
Bsh1285I	CGRYCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	6, 343, 590
BsiEI	CGRYCG	1 cut(s)	591
BsiSI	CCGG	3 cut(s)	313, 326, 424
BslFI	GGGAC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	3 cut(s)	6, 343, 590
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	2 cut(s)	224, 591
BspANI	GGCC	3 cut(s)	6, 343, 590
BspPI	GGATC	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	1 cut(s)	280
BssNI	GRCGYC	1 cut(s)	582
Bst4CI	ACNGT	4 cut(s)	349, 485, 532, 571
Bst6I	CTCTTC	2 cut(s)	67, 286
BstACI	GRCGYC	1 cut(s)	582
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	175, 688
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMCI	CGRYCG	1 cut(s)	591
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 590
BstNSI	RCATGY	2 cut(s)	148, 614
BstSCI	CCNGG	1 cut(s)	422
BstV1I	GCAGC	5 cut(s)	28, 160, 253, 580, 601
BstXI	CCANNNNNNTGG	1 cut(s)	625
BstZI	CGGCCG	1 cut(s)	588
BsuRI	GGCC	3 cut(s)	6, 343, 590
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	175, 688
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	4 cut(s)	4, 173, 226, 341
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	6 cut(s)	103, 145, 152, 278, 611, 631
CviJI	RGCY	8 cut(s)	6, 41, 128, 200, 304, 343, 590, 660
CviKI_1	RGCY	8 cut(s)	6, 41, 128, 200, 304, 343, 590, 660
CviQI	GTAC	1 cut(s)	608
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	588
EagI	CGGCCG	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	67, 286
EarI	CTCTTC	2 cut(s)	67, 286
EclXI	CGGCCG	1 cut(s)	588
Eco47I	GGWCC	2 cut(s)	173, 226
Eco52I	CGGCCG	1 cut(s)	588
Eco57I	CTGAAG	1 cut(s)	57
FaeI	CATG	6 cut(s)	106, 148, 155, 281, 614, 634
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	6 cut(s)	102, 144, 151, 277, 610, 630
Fnu4HI	GCNGC	6 cut(s)	42, 149, 242, 591, 594, 615
FokI	GGATG	2 cut(s)	182, 695
Fsp4HI	GCNGC	6 cut(s)	42, 149, 242, 591, 594, 615
FspBI	CTAG	2 cut(s)	237, 287
GluI	GCNGC	6 cut(s)	42, 149, 242, 591, 594, 615
HaeIII	GGCC	3 cut(s)	6, 343, 590
HapII	CCGG	3 cut(s)	313, 326, 424
HgaI	GACGC	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	582
Hin1II	CATG	6 cut(s)	106, 148, 155, 281, 614, 634
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	4 cut(s)	86, 250, 455, 508
HpaII	CCGG	3 cut(s)	313, 326, 424
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	3 cut(s)	37, 93, 507
Hpy188III	TCNNGA	2 cut(s)	474, 578
Hpy8I	GTNNAC	1 cut(s)	275
HpyCH4III	ACNGT	4 cut(s)	349, 485, 532, 571
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	5 cut(s)	44, 148, 434, 519, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 590
HpySE526I	ACGT	1 cut(s)	606
Hsp92I	GRCGYC	1 cut(s)	582
Hsp92II	CATG	6 cut(s)	106, 148, 155, 281, 614, 634
KroI	GCCGGC	1 cut(s)	312
KroNI	GCCGGC	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	672
LpnPI	CCDG	8 cut(s)	315, 326, 339, 437, 459, 483, 615, 681
Lsp1109I	GCAGC	5 cut(s)	28, 160, 253, 580, 601
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	2 cut(s)	237, 287
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	3 cut(s)	493, 565, 698
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	54, 303, 646
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	4 cut(s)	81, 477, 514, 677
MlyI	GAGTC	2 cut(s)	80, 502
MnlI	CCTC	5 cut(s)	70, 185, 356, 461, 703
MroNI	GCCGGC	1 cut(s)	312
MseI	TTAA	2 cut(s)	186, 351
MslI	CAYNNNNRTG	2 cut(s)	143, 164
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	3 cut(s)	313, 326, 424
MspR9I	CCNGG	1 cut(s)	424
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	440, 590
NaeI	GCCGGC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	424
NdeII	GATC	1 cut(s)	280
NgoMIV	GCCGGC	1 cut(s)	312
NlaIII	CATG	6 cut(s)	106, 148, 155, 281, 614, 634
NmuCI	GTSAC	1 cut(s)	493
NspI	RCATGY	2 cut(s)	148, 614
PctI	GAATGC	1 cut(s)	434
PdiI	GCCGGC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	250, 455
PkrI	GCNGC	6 cut(s)	43, 150, 243, 592, 595, 616
PleI	GAGTC	2 cut(s)	80, 502
PpsI	GAGTC	2 cut(s)	80, 502
PshBI	ATTAAT	1 cut(s)	186
PspPI	GGNCC	4 cut(s)	4, 173, 226, 341
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
RseI	CAYNNNNRTG	2 cut(s)	143, 164
SaqAI	TTAA	2 cut(s)	186, 351
SatI	GCNGC	6 cut(s)	42, 149, 242, 591, 594, 615
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	4 cut(s)	4, 173, 226, 341
SchI	GAGTC	2 cut(s)	80, 502
ScrFI	CCNGG	1 cut(s)	424
SetI	ASST	9 cut(s)	43, 62, 130, 306, 367, 453, 604, 609, 662
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	2 cut(s)	173, 226
SmiMI	CAYNNNNRTG	2 cut(s)	143, 164
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	81, 477, 514, 677
SsiI	CCGC	2 cut(s)	224, 591
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	2 cut(s)	237, 287
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	4 cut(s)	349, 485, 532, 571
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	1 cut(s)	453
TasI	AATT	4 cut(s)	81, 477, 514, 677
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	250, 455
Tru1I	TTAA	2 cut(s)	186, 351
Tru9I	TTAA	2 cut(s)	186, 351
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	5 cut(s)	41, 148, 241, 593, 614
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	148, 647
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	2 cut(s)	173, 226
VspI	ATTAAT	1 cut(s)	186
XceI	RCATGY	2 cut(s)	148, 614
XspI	CTAG	2 cut(s)	237, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.