Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006367

Physical Location & Seq

Genomic Coordinates Reverse (-)

44827326 .. 44827763

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0355800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAATATGGAGGATTGGGGTGACTCCGATGGCGCGGTGGGGATCTGGCGTAGCGGCGGGGGTTGCTTGCCTCGTTTCTCTTCCTTGCGATGGAGTTACTATTGTGATTCTCGAGGCCAGTGGAGGATCAGAAGGTGGAATAGCTTTCCGATTCTGGTGGTGGACAAGGGTAGTACGGTGGTCGCGGTGGTGAGTGGGTCGAGCGGTTGTCAGCCAGCAACAGGGGCAGGGAACCTCGTCCCTGGTCTTGGTCGCGTACGGCGGACCTGGATTTGCATATGGAAGGTTGATATGGGCGGCGTTGGGCTGCGTGCGACAGGCGACAAATCTCCAGATGTTGAGTCGATGGTCAGCAGCTTTTCCAGGCTGAAGATGTTGCACGACGGCGTGGTGCAGACTGGTCCGAAGATCCAGATTTGGGATCCGGGTCGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

145

Amino Acids

15.85

Weight (kDa)

9.55

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16190
fragaria_vesca	FvH4_6g31890 FvH4_6g31890
malus_domestica	MD09G1208600.v1.1
prunus_persica	Prupe.3G064800_v2.0.a1
pyrus_communis	pycom09g12470
rosa_chinensis	RchiOBHm_Chr2g0139241 RchiOBHm_Chr2g0139251
rosa_laevigata	RLG00000019564 RLG00000019710 RLG00000019798 RLG00000019799
rosa_multiflora	Rmu_sc0001803.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105530
rosa_rugosa	Rorug02G0355800 Rorug02G0355900 Rorug02G0356000
rosa_samantha	Rh2AG405900 Rh2BG416500 Rh2BG416600 Rh2CG392100 Rh2CG392200 Rh2DG425700
rosa_wichuraiana	Rw2G032890 Rw2G032900 Rw2G033160 Rw2G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	3 cut(s)	35, 185, 255
AciI	CCGC	7 cut(s)	35, 54, 57, 185, 204, 262, 297
AclWI	GGATC	5 cut(s)	50, 134, 403, 416, 429
AcuI	CTGAAG	1 cut(s)	389
AfaI	GTAC	2 cut(s)	175, 258
AfiI	CCNNNNNNNGG	4 cut(s)	90, 221, 248, 418
AjnI	CCWGG	3 cut(s)	241, 266, 362
AluBI	AGCT	2 cut(s)	144, 357
AluI	AGCT	2 cut(s)	144, 357
AlwI	GGATC	5 cut(s)	50, 134, 403, 416, 429
Ama87I	CYCGRG	1 cut(s)	111
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	2 cut(s)	307, 354
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	264, 401
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	32, 202
AvaI	CYCGRG	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	264, 401
BamHI	GGATCC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	294, 366
BccI	CCATC	3 cut(s)	23, 84, 340
BceAI	ACGGC	2 cut(s)	275, 400
BciT130I	CCWGG	3 cut(s)	243, 268, 364
BcnI	CCSGG	1 cut(s)	426
BisI	GCNGC	4 cut(s)	55, 298, 308, 355
BlsI	GCNGC	4 cut(s)	56, 299, 309, 356
Bme1390I	CCNGG	4 cut(s)	243, 268, 364, 426
Bme18I	GGWCC	2 cut(s)	264, 401
BmeT110I	CYCGRG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	264, 401
BmiI	GGNNCC	2 cut(s)	233, 423
BmrFI	CCNGG	4 cut(s)	243, 268, 364, 426
BpmI	CTGGAG	1 cut(s)	315
BpuMI	CCSGG	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 221, 248, 418
Bse1I	ACTGG	2 cut(s)	118, 403
BseBI	CCWGG	3 cut(s)	243, 268, 364
BseDI	CCNNGG	1 cut(s)	241
BseLI	CCNNNNNNNGG	4 cut(s)	90, 221, 248, 418
BseNI	ACTGG	2 cut(s)	118, 403
BseXI	GCAGC	2 cut(s)	294, 366
BsgI	GTGCAG	1 cut(s)	413
Bsh1236I	CGCG	3 cut(s)	35, 185, 255
BshFI	GGCC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	425
BsiWI	CGTACG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	90, 221, 248, 418
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	42, 126, 408, 421
BspACI	CCGC	7 cut(s)	35, 54, 57, 185, 204, 262, 297
BspANI	GGCC	1 cut(s)	117
BspFNI	CGCG	3 cut(s)	35, 185, 255
BspLI	GGNNCC	2 cut(s)	233, 423
BspPI	GGATC	5 cut(s)	50, 134, 403, 416, 429
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	118, 403
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	4 cut(s)	42, 126, 408, 421
Bst2UI	CCWGG	3 cut(s)	243, 268, 364
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	85
BstC8I	GCNNGC	3 cut(s)	68, 216, 312
BstFNI	CGCG	3 cut(s)	35, 185, 255
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	4 cut(s)	45, 129, 411, 424
BstMBI	GATC	4 cut(s)	42, 126, 408, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 224
BstNI	CCWGG	3 cut(s)	243, 268, 364
BstSCI	CCNGG	4 cut(s)	241, 266, 362, 424
BstUI	CGCG	3 cut(s)	35, 185, 255
BstV1I	GCAGC	2 cut(s)	294, 366
BstX2I	RGATCY	3 cut(s)	42, 408, 421
BstYI	RGATCY	3 cut(s)	42, 408, 421
BsuRI	GGCC	1 cut(s)	117
BtgZI	GCGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	3 cut(s)	68, 216, 312
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	264, 401
Csp6I	GTAC	2 cut(s)	174, 257
CviJI	RGCY	6 cut(s)	117, 144, 214, 307, 357, 367
CviKI_1	RGCY	6 cut(s)	117, 144, 214, 307, 357, 367
CviQI	GTAC	2 cut(s)	174, 257
DpnI	GATC	4 cut(s)	44, 128, 410, 423
DpnII	GATC	4 cut(s)	42, 126, 408, 421
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
EciI	GGCGGA	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	264, 401
Eco57I	CTGAAG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	111
EcoRII	CCWGG	3 cut(s)	241, 266, 362
FaiI	YATR	5 cut(s)	8, 278, 280, 293, 436
FaqI	GGGAC	1 cut(s)	224
FauI	CCCGC	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	278
Fnu4HI	GCNGC	4 cut(s)	55, 298, 308, 355
Fsp4HI	GCNGC	4 cut(s)	55, 298, 308, 355
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	4 cut(s)	55, 298, 308, 355
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	4 cut(s)	23, 107, 151, 341
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	2 cut(s)	32, 202
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	5 cut(s)	28, 131, 150, 405, 432
Hpy188III	TCNNGA	3 cut(s)	111, 332, 412
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	126, 277
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	276, 379, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 224
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	42, 126, 408, 421
Lsp1109I	GCAGC	2 cut(s)	294, 366
MaeIII	GTNAC	2 cut(s)	20, 95
MalI	GATC	4 cut(s)	44, 128, 410, 423
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	4 cut(s)	42, 126, 408, 421
MboII	GAAGA	3 cut(s)	72, 382, 418
MflI	RGATCY	3 cut(s)	42, 408, 421
MlyI	GAGTC	2 cut(s)	17, 350
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	5 cut(s)	4, 81, 107, 117, 245
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	4 cut(s)	243, 268, 364, 426
MvaI	CCWGG	3 cut(s)	243, 268, 364
MvnI	CGCG	3 cut(s)	35, 185, 255
MwoI	GCNNNNNNNGC	2 cut(s)	63, 224
NciI	CCSGG	1 cut(s)	426
NdeI	CATATG	1 cut(s)	278
NdeII	GATC	4 cut(s)	42, 126, 408, 421
NlaIV	GGNNCC	2 cut(s)	233, 423
NmuCI	GTSAC	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	107, 151
Pfl23II	CGTACG	1 cut(s)	256
PkrI	GCNGC	4 cut(s)	56, 299, 309, 356
PleI	GAGTC	2 cut(s)	17, 349
PpsI	GAGTC	2 cut(s)	17, 349
Psp6I	CCWGG	3 cut(s)	241, 266, 362
PspGI	CCWGG	3 cut(s)	241, 266, 362
PspLI	CGTACG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	233, 423
PspPI	GGNCC	2 cut(s)	264, 401
PsuI	RGATCY	3 cut(s)	42, 408, 421
RsaI	GTAC	2 cut(s)	175, 258
RsaNI	GTAC	2 cut(s)	174, 257
SatI	GCNGC	4 cut(s)	55, 298, 308, 355
Sau3AI	GATC	4 cut(s)	42, 126, 408, 421
Sau96I	GGNCC	2 cut(s)	264, 401
SchI	GAGTC	2 cut(s)	17, 350
ScrFI	CCNGG	4 cut(s)	243, 268, 364, 426
SetI	ASST	6 cut(s)	137, 146, 237, 269, 288, 359
Sfr274I	CTCGAG	1 cut(s)	111
SinI	GGWCC	2 cut(s)	264, 401
SlaI	CTCGAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
SsiI	CCGC	7 cut(s)	35, 54, 57, 185, 204, 262, 297
StyD4I	CCNGG	4 cut(s)	241, 266, 362, 424
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	3 cut(s)	112, 200, 344
TauI	GCSGC	2 cut(s)	57, 300
TfiI	GAWTC	2 cut(s)	107, 151
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	2 cut(s)	307, 354
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	264, 401
XhoI	CTCGAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.