Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001803.1

Orthogroup ID

OG0006367

Physical Location & Seq

Genomic Coordinates Forward (+)

2812 .. 4888

Gene Structure 2077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001803.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgcagaaagatttcatagatggtcctgtgctagggaaagcaggcaaagccatagtcccaaatgtaatagaggcagttcaaatcgctaggcagcgtggcattctcgtagtttgggttgcgcgtgaacatgatccactaggaagagatgttgagctatttcgccggcatttctattctgctgggaaggagggtctagcggttaagggtcagataggtgctgaacttgttgatgggcttgtgattgaagaaggggactataaattagtcaagacccggtttagtgcattctttgctacacaccttgattcgtatctcaagactaatggagttgagagtttggttgtcattggtgttcagactccaaactgcattaggcagactgtgtttgatggcgtagctttggattacaaatctattacagttattgttgatgccacagctgctgctacagctgatgtacatgccgccaatatatttgacatgaagaatgttggagttgcaacaccaaccttacaagaatgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

175

Amino Acids

19.02

Weight (kDa)

5.79

Isoelectric Point (pI)

23.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16190
fragaria_vesca	FvH4_6g31890 FvH4_6g31890
malus_domestica	MD09G1208600.v1.1
prunus_persica	Prupe.3G064800_v2.0.a1
pyrus_communis	pycom09g12470
rosa_chinensis	RchiOBHm_Chr2g0139241 RchiOBHm_Chr2g0139251
rosa_laevigata	RLG00000019564 RLG00000019710 RLG00000019798 RLG00000019799
rosa_multiflora	Rmu_sc0001803.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105530
rosa_rugosa	Rorug02G0355800 Rorug02G0355900 Rorug02G0356000
rosa_samantha	Rh2AG405900 Rh2BG416500 Rh2BG416600 Rh2CG392100 Rh2CG392200 Rh2DG425700
rosa_wichuraiana	Rw2G032890 Rw2G032900 Rw2G033160 Rw2G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AciI	CCGC	2 cut(s)	197, 465
AclWI	GGATC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	80, 245
AluBI	AGCT	4 cut(s)	154, 398, 440, 452
AluI	AGCT	4 cut(s)	154, 398, 440, 452
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	91, 440, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	39, 71
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	103, 427, 430
BccI	CCATC	3 cut(s)	14, 224, 383
BcnI	CCSGG	1 cut(s)	274
BfaI	CTAG	4 cut(s)	32, 87, 137, 194
BfmI	CTRYAG	1 cut(s)	447
BisI	GCNGC	4 cut(s)	92, 441, 444, 465
BlsI	GCNGC	4 cut(s)	93, 442, 445, 466
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	162
Bse8I	GATNNNNATC	1 cut(s)	309
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	103, 427, 430
BseYI	CCCAGC	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	121
BsiSI	CCGG	2 cut(s)	163, 274
BslFI	GGGAC	2 cut(s)	41, 266
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	41, 266
BsmI	GAATGC	2 cut(s)	99, 284
Bsp1407I	TGTACA	1 cut(s)	457
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	197, 465
BspFNI	CGCG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	457
BssAI	RCCGGY	1 cut(s)	162
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	382, 421
Bst6I	CTCTTC	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	457
BstC8I	GCNNGC	2 cut(s)	43, 164
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 290, 440, 449
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	447
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	3 cut(s)	103, 427, 430
Cac8I	GCNNGC	2 cut(s)	43, 164
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	121
Cfr10I	RCCGGY	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	3 cut(s)	128, 461, 481
CviJI	RGCY	6 cut(s)	50, 154, 235, 398, 440, 452
CviKI_1	RGCY	6 cut(s)	50, 154, 235, 398, 440, 452
CviQI	GTAC	1 cut(s)	458
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	131, 464, 484
FaiI	YATR	7 cut(s)	17, 53, 129, 258, 462, 473, 482
FaqI	GGGAC	2 cut(s)	41, 266
FatI	CATG	3 cut(s)	127, 460, 480
Fnu4HI	GCNGC	4 cut(s)	92, 441, 444, 465
Fsp4HI	GCNGC	4 cut(s)	92, 441, 444, 465
FspBI	CTAG	4 cut(s)	32, 87, 137, 194
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	4 cut(s)	92, 441, 444, 465
GsaI	CCCAGC	1 cut(s)	183
HapII	CCGG	2 cut(s)	163, 274
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	131, 464, 484
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	2 cut(s)	305, 358
HpaII	CCGG	2 cut(s)	163, 274
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	2 cut(s)	210, 357
Hpy188III	TCNNGA	2 cut(s)	268, 316
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	178, 242
HpyCH4III	ACNGT	2 cut(s)	382, 421
HpyCH4V	TGCA	4 cut(s)	4, 284, 369, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 290, 440, 449
Hsp92II	CATG	3 cut(s)	131, 464, 484
HspAI	GCGC	1 cut(s)	119
KroI	GCCGGC	1 cut(s)	162
KroNI	GCCGGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	5 cut(s)	27, 39, 165, 176, 287
Lsp1109I	GCAGC	3 cut(s)	103, 427, 430
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	4 cut(s)	32, 87, 137, 194
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	153, 257, 496
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	2 cut(s)	64, 181
MroNI	GCCGGC	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	2 cut(s)	440, 452
MspI	CCGG	2 cut(s)	163, 274
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	2 cut(s)	99, 284
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	4 cut(s)	47, 290, 440, 449
NaeI	GCCGGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	130
NgoMIV	GCCGGC	1 cut(s)	162
NlaIII	CATG	3 cut(s)	131, 464, 484
NspI	RCATGY	1 cut(s)	464
PctI	GAATGC	2 cut(s)	99, 284
PdiI	GCCGGC	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	93, 442, 445, 466
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	443
PvuII	CAGCTG	2 cut(s)	440, 452
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	92, 441, 444, 465
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	274
SetI	ASST	7 cut(s)	156, 217, 303, 400, 442, 454, 512
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	197, 465
SspMI	CTAG	4 cut(s)	32, 87, 137, 194
StyD4I	CCNGG	1 cut(s)	272
TaaI	ACNGT	2 cut(s)	382, 421
TasI	AATT	1 cut(s)	260
TatI	WGTACW	1 cut(s)	457
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseI	GCWGC	3 cut(s)	91, 440, 443
TspDTI	ATGAA	2 cut(s)	4, 497
VpaK11BI	GGWCC	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	30
XceI	RCATGY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	4 cut(s)	32, 87, 137, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.