Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006367

Physical Location & Seq

Genomic Coordinates Reverse (-)

61661957 .. 61668477

Gene Structure 6521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG425700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGAGACAAATGGAAGCACACAGCTCTCCTCGTCATTGACATGCAGAAAGATTTTATAGATAGGGCTGGTCCTATGTCAGTGAAAGGAGGCAAAGCCATAGTCCCAAATGTAATAGAGGCAGTTCAAATGGCTAGGCAGCGCGGCATTCTCGTAGTTTGGGTTGTGCGTGAACATGATCCATTAGGAAGAGATGTTGAGCTATTTCGCCGGCATTTGTATTCTGCTGGGAAAAAGGGTCCAACGGTTAAGGGTCAGATAGGTGCTGAACTTGTTGATGGGCTTGTGATTGAAGAAGGGGACTATAAATTAGTCAAGACCCGGTTTAGTGCATTCTTTGCTACACACCTTGATTCCTATCTTAAGAGTAATGGGGTTGACAGTTTGGTTGTCATTGGTGTTCAGACTCCAAACTGCATTAGGCAGACTGTGTTTGATGGCGTAGCTTTGGATTACAAATCTATTACAGTTATTGTTGATGCCACAGCTGCTGCTACAGCTGATGTACATGCCGCCAATATATTTGACATGAAGAATGTTGGAGTTGCAACACCAACCTTACAAGAATGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

191

Amino Acids

20.89

Weight (kDa)

6.97

Isoelectric Point (pI)

21.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	8 - 184	1.5e-38	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16190
fragaria_vesca	FvH4_6g31890 FvH4_6g31890
malus_domestica	MD09G1208600.v1.1
prunus_persica	Prupe.3G064800_v2.0.a1
pyrus_communis	pycom09g12470
rosa_chinensis	RchiOBHm_Chr2g0139241 RchiOBHm_Chr2g0139251
rosa_laevigata	RLG00000019564 RLG00000019710 RLG00000019798 RLG00000019799
rosa_multiflora	Rmu_sc0001803.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105530
rosa_rugosa	Rorug02G0355800 Rorug02G0355900 Rorug02G0356000
rosa_samantha	Rh2AG405900 Rh2BG416500 Rh2BG416600 Rh2CG392100 Rh2CG392200 Rh2DG425700
rosa_wichuraiana	Rw2G032890 Rw2G032900 Rw2G033160 Rw2G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	144
AciI	CCGC	2 cut(s)	144, 513
AclWI	GGATC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	507
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	128, 293
AluBI	AGCT	5 cut(s)	26, 202, 446, 488, 500
AluI	AGCT	5 cut(s)	26, 202, 446, 488, 500
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	491
ApeKI	GCWGC	3 cut(s)	139, 488, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	2 cut(s)	71, 239
AsuC2I	CCSGG	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	71, 239
BbvI	GCAGC	3 cut(s)	151, 475, 478
BccI	CCATC	2 cut(s)	272, 431
BcnI	CCSGG	1 cut(s)	322
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	495
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	5 cut(s)	140, 145, 489, 492, 513
BlsI	GCNGC	5 cut(s)	141, 146, 490, 493, 514
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	2 cut(s)	71, 239
BmgT120I	GGNCC	2 cut(s)	71, 239
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	469
BpuMI	CCSGG	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	357
BseJI	GATNNNNATC	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	151, 475, 478
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	211, 322
BslFI	GGGAC	2 cut(s)	89, 314
BsmFI	GGGAC	2 cut(s)	89, 314
BsmI	GAATGC	2 cut(s)	147, 332
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	2 cut(s)	144, 513
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	210
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	4 cut(s)	247, 383, 430, 469
Bst6I	CTCTTC	1 cut(s)	184
BstAFI	CTTAAG	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	212
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 488, 497
BstNSI	RCATGY	2 cut(s)	46, 512
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	151, 475, 478
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	71, 239
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	4 cut(s)	43, 176, 509, 529
CviJI	RGCY	9 cut(s)	26, 68, 98, 134, 202, 283, 446, 488, 500
CviKI_1	RGCY	9 cut(s)	26, 68, 98, 134, 202, 283, 446, 488, 500
CviQI	GTAC	1 cut(s)	506
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	71, 239
FaeI	CATG	4 cut(s)	46, 179, 512, 532
FaiI	YATR	9 cut(s)	44, 59, 77, 101, 177, 306, 510, 521, 530
FaqI	GGGAC	2 cut(s)	89, 314
FatI	CATG	4 cut(s)	42, 175, 508, 528
Fnu4HI	GCNGC	5 cut(s)	140, 145, 489, 492, 513
Fsp4HI	GCNGC	5 cut(s)	140, 145, 489, 492, 513
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	5 cut(s)	140, 145, 489, 492, 513
GsaI	CCCAGC	1 cut(s)	231
HapII	CCGG	2 cut(s)	211, 322
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	46, 179, 512, 532
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	353, 406
HpaII	CCGG	2 cut(s)	211, 322
Hpy166II	GTNNAC	2 cut(s)	173, 379
Hpy188I	TCNGA	2 cut(s)	258, 405
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	2 cut(s)	173, 379
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	4 cut(s)	247, 383, 430, 469
HpyCH4V	TGCA	4 cut(s)	46, 332, 417, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 488, 497
Hsp92II	CATG	4 cut(s)	46, 179, 512, 532
HspAI	GCGC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	4 cut(s)	54, 213, 224, 335
Lsp1109I	GCAGC	3 cut(s)	151, 475, 478
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	135
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	3 cut(s)	201, 305, 544
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	2 cut(s)	266, 520
MnlI	CCTC	3 cut(s)	41, 83, 112
MroNI	GCCGGC	1 cut(s)	210
MseI	TTAA	2 cut(s)	249, 363
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	488, 500
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	211, 322
MspR9I	CCNGG	1 cut(s)	322
Mva1269I	GAATGC	2 cut(s)	147, 332
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	338, 488, 497
NaeI	GCCGGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	1 cut(s)	178
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	4 cut(s)	46, 179, 512, 532
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	2 cut(s)	46, 512
PctI	GAATGC	2 cut(s)	147, 332
PdiI	GCCGGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	141, 146, 490, 493, 514
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	71, 239
PstNI	CAGNNNCTG	1 cut(s)	491
PvuII	CAGCTG	2 cut(s)	488, 500
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	249, 363
SatI	GCNGC	5 cut(s)	140, 145, 489, 492, 513
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	71, 239
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	8 cut(s)	28, 204, 265, 351, 448, 490, 502, 560
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	2 cut(s)	71, 239
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	2 cut(s)	144, 513
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	4 cut(s)	247, 383, 430, 469
TasI	AATT	1 cut(s)	308
TatI	WGTACW	1 cut(s)	505
TauI	GCSGC	2 cut(s)	147, 515
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	249, 363
Tru9I	TTAA	2 cut(s)	249, 363
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	3 cut(s)	139, 488, 491
TspDTI	ATGAA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	71, 239
XceI	RCATGY	2 cut(s)	46, 512
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.