Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006367

Physical Location & Seq

Genomic Coordinates Reverse (-)

44968340 .. 44969843

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0356000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCCAAAGAAGATGAAGATGGCTATCCTCAATCCCATTTTTCTAATTGTTCTCATCAGCTCATTACAGATCTCTTTGGGTACTTCTGCTTTGGCTGAAGTAGCAACTACTTCACAAGTGTATGCAGGGTTACAGAAAACCTGGTTTTTGAAGTACAAAGATAATGATTATGCCCCAAAACCTTCACCACCGCCAGCTCCGAAACCTAGTCCGCCAAAAGTACCAATTTCAGAAGACGTCCTATCCGAGAGAGCTCCCCCAAGTCCGTACATAGCTTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006206 GO:0006208 GO:0006212 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009987 GO:0017144 GO:0019860 GO:0034641 GO:0042737 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044424 GO:0044464 GO:0046113 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Isochorismatase

Protein Analysis

94

Amino Acids

10.15

Weight (kDa)

9.48

Isoelectric Point (pI)

76.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16190
fragaria_vesca	FvH4_6g31890 FvH4_6g31890
malus_domestica	MD09G1208600.v1.1
prunus_persica	Prupe.3G064800_v2.0.a1
pyrus_communis	pycom09g12470
rosa_chinensis	RchiOBHm_Chr2g0139241 RchiOBHm_Chr2g0139251
rosa_laevigata	RLG00000019564 RLG00000019710 RLG00000019798 RLG00000019799
rosa_multiflora	Rmu_sc0001803.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105530
rosa_rugosa	Rorug02G0355800 Rorug02G0355900 Rorug02G0356000
rosa_samantha	Rh2AG405900 Rh2BG416500 Rh2BG416600 Rh2CG392100 Rh2CG392200 Rh2DG425700
rosa_wichuraiana	Rw2G032890 Rw2G032900 Rw2G033160 Rw2G033170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AciI	CCGC	2 cut(s)	191, 212
AcuI	CTGAAG	2 cut(s)	117, 261
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	82, 155, 222, 269
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	5 cut(s)	60, 197, 254, 275, 281
AluI	AGCT	5 cut(s)	60, 197, 254, 275, 281
Alw21I	GWGCWC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	256
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	142
BfaI	CTAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	142
BseJI	GATNNNNATC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	2 cut(s)	191, 212
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	195
CsiI	ACCWGGT	1 cut(s)	140
Csp6I	GTAC	4 cut(s)	81, 154, 221, 268
CviJI	RGCY	7 cut(s)	23, 60, 95, 197, 254, 275, 281
CviKI_1	RGCY	7 cut(s)	23, 60, 95, 197, 254, 275, 281
CviQI	GTAC	4 cut(s)	81, 154, 221, 268
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	254
Eco57I	CTGAAG	2 cut(s)	117, 261
EcoICRI	GAGCTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	256
FaiI	YATR	3 cut(s)	123, 171, 272
FriOI	GRGCYC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	237
HphI	GGTGA	1 cut(s)	177
Hpy188I	TCNGA	3 cut(s)	201, 232, 247
HpyAV	CCTTC	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	202, 259
LpnPI	CCDG	4 cut(s)	111, 127, 154, 207
MabI	ACCWGGT	1 cut(s)	140
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	22, 28, 245
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	2 cut(s)	45, 225
MnlI	CCTC	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	4 cut(s)	82, 155, 222, 269
RsaNI	GTAC	4 cut(s)	81, 154, 221, 268
SacI	GAGCTC	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	9 cut(s)	62, 143, 184, 199, 208, 240, 256, 277, 283
SexAI	ACCWGGT	1 cut(s)	140
SgeI	CNNG	8 cut(s)	128, 138, 153, 154, 206, 219, 259, 273
Sse9I	AATT	2 cut(s)	45, 225
SsiI	CCGC	2 cut(s)	191, 212
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	240
TasI	AATT	2 cut(s)	45, 225
TatI	WGTACW	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	255
XspI	CTAG	1 cut(s)	207
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.