Rh2CG392200

Isochorismatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006367
Physical Location & Seq
Reverse (-)
53455298 .. 53457467
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG392200.1

Sequence Viewer

Length: 588 bp
ATGGTAGACAAATGGAAGCACACAGCTCTCCTCGTCATTGACATGCAGAAAGATTTTATAGATCGGGATGGTCCTATGCCAGTGAAAGGAGGCAAAGCCATAGTCCCAAATGTAATAGAGGCAGTTCAAATGGCTAGGCAGCGTGGCATTCTCGTAGTTTGGGTTGTGCGTGAACATGATCCATTAGGAAGAGATGTTGAGCTATTTCGCCGGCATTTGTATTCTACTGGGAAAAAGGGTCCAACGGTTAAGGGTCAGATAGGTGCTGAACTTGTTGATGGGCTTGTGATTGAAGAAGGGGACTATAAATTAGTCAAGACCCGGTTTAGTGCATTCTTTGCTACACACCTTGATTCTTATCTTAAGAGTAATGGAGTTGACAGTTTGGTTGTCATTGGTGTTCAGACTCCAAACTGCATTAGGCAGACTGTGTTTGATGGCGTGGCTTTGGATTACAAATCTATTACAGTTATTGTTGATGCCACAGCTGCTGCTACAGCTGACATACACGCTGCCAATATATTTGACATGAAAAACGTTGGAGTTGCAACACCAACCTTACAAGAATGGTCTGAATTGGGAGCTTGA

Protein Analysis

195

Amino Acids

21.39

Weight (kDa)

6.2

Isoelectric Point (pI)

22.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Isochorismatase PF00857 8 - 184 3.3e-38 Isochorismatase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 173
AfiI CCNNNNNNNGG 1 cut(s) 86
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 128, 293
AluBI AGCT 5 cut(s) 26, 202, 488, 500, 584
AluI AGCT 5 cut(s) 26, 202, 488, 500, 584
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 491
ApeKI GCWGC 4 cut(s) 139, 488, 491, 512
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspS9I GGNCC 2 cut(s) 71, 239
AsuC2I CCSGG 1 cut(s) 322
AvaII GGWCC 2 cut(s) 71, 239
BbvI GCAGC 4 cut(s) 151, 475, 478, 499
BccI CCATC 3 cut(s) 62, 272, 431
BcnI CCSGG 1 cut(s) 322
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 362
BisI GCNGC 4 cut(s) 140, 489, 492, 513
BlsI GCNGC 4 cut(s) 141, 490, 493, 514
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 2 cut(s) 71, 239
BmgT120I GGNCC 2 cut(s) 71, 239
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 469
BmuI ACTGGG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 80, 232
Bse8I GATNNNNATC 1 cut(s) 357
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 80, 232
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 4 cut(s) 151, 475, 478, 499
BsiSI CCGG 2 cut(s) 211, 322
BslFI GGGAC 2 cut(s) 89, 314
BslI CCNNNNNNNGG 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 89, 314
BsmI GAATGC 2 cut(s) 147, 332
Bsp143I GATC 2 cut(s) 61, 178
BspLI GGNNCC 1 cut(s) 240
BspPI GGATC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 210
BsrI ACTGG 2 cut(s) 80, 232
BssAI RCCGGY 1 cut(s) 210
BssMI GATC 2 cut(s) 61, 178
Bst4CI ACNGT 4 cut(s) 247, 383, 430, 469
Bst6I CTCTTC 1 cut(s) 184
BstAFI CTTAAG 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 212
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 2 cut(s) 64, 181
BstMBI GATC 2 cut(s) 61, 178
BstMWI GCNNNNNNNGC 3 cut(s) 338, 488, 497
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 4 cut(s) 151, 475, 478, 499
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 212
CaiI CAGNNNCTG 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 71, 239
CviAII CATG 3 cut(s) 43, 176, 529
CviJI RGCY 9 cut(s) 26, 98, 134, 202, 283, 446, 488, 500, 584
CviKI_1 RGCY 9 cut(s) 26, 98, 134, 202, 283, 446, 488, 500, 584
DpnI GATC 2 cut(s) 63, 180
DpnII GATC 2 cut(s) 61, 178
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
Eco47I GGWCC 2 cut(s) 71, 239
FaeI CATG 3 cut(s) 46, 179, 532
FaiI YATR 9 cut(s) 44, 59, 77, 101, 177, 306, 506, 521, 530
FaqI GGGAC 2 cut(s) 89, 314
FatI CATG 3 cut(s) 42, 175, 528
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 140, 489, 492, 513
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 140, 489, 492, 513
FspBI CTAG 1 cut(s) 135
GluI GCNGC 4 cut(s) 140, 489, 492, 513
HapII CCGG 2 cut(s) 211, 322
Hin1II CATG 3 cut(s) 46, 179, 532
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 353, 406
HpaII CCGG 2 cut(s) 211, 322
Hpy166II GTNNAC 3 cut(s) 7, 173, 379
Hpy188I TCNGA 3 cut(s) 258, 405, 574
Hpy188III TCNNGA 2 cut(s) 65, 316
Hpy8I GTNNAC 3 cut(s) 7, 173, 379
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 4 cut(s) 247, 383, 430, 469
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 4 cut(s) 46, 332, 417, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 488, 497
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 3 cut(s) 46, 179, 532
KroI GCCGGC 1 cut(s) 210
KroNI GCCGGC 1 cut(s) 212
Kzo9I GATC 2 cut(s) 61, 178
LmnI GCTCC 1 cut(s) 581
LpnPI CCDG 4 cut(s) 93, 213, 224, 335
Lsp1109I GCAGC 4 cut(s) 151, 475, 478, 499
LweI GCATC 1 cut(s) 469
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 537
MalI GATC 2 cut(s) 63, 180
MboI GATC 2 cut(s) 61, 178
MboII GAAGA 2 cut(s) 201, 305
MluCI AATT 2 cut(s) 308, 575
MlyI GAGTC 1 cut(s) 400
MmeI TCCRAC 2 cut(s) 266, 520
MnlI CCTC 3 cut(s) 41, 83, 112
MroNI GCCGGC 1 cut(s) 210
MseI TTAA 2 cut(s) 249, 363
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 488, 500
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 2 cut(s) 211, 322
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 2 cut(s) 147, 332
MwoI GCNNNNNNNGC 3 cut(s) 338, 488, 497
NaeI GCCGGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 322
NdeII GATC 2 cut(s) 61, 178
NgoMIV GCCGGC 1 cut(s) 210
NlaIII CATG 3 cut(s) 46, 179, 532
NlaIV GGNNCC 1 cut(s) 240
NspI RCATGY 1 cut(s) 46
PctI GAATGC 2 cut(s) 147, 332
PdiI GCCGGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 353
PkrI GCNGC 4 cut(s) 141, 490, 493, 514
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp1406I AACGTT 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 71, 239
PstNI CAGNNNCTG 1 cut(s) 491
PvuII CAGCTG 2 cut(s) 488, 500
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 249, 363
SatI GCNGC 4 cut(s) 140, 489, 492, 513
Sau3AI GATC 2 cut(s) 61, 178
Sau96I GGNCC 2 cut(s) 71, 239
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 322
SetI ASST 9 cut(s) 28, 204, 265, 351, 490, 502, 540, 560, 586
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 2 cut(s) 71, 239
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 2 cut(s) 308, 575
SspMI CTAG 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 4 cut(s) 247, 383, 430, 469
TaiI ACGT 1 cut(s) 540
TasI AATT 2 cut(s) 308, 575
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 249, 363
Tru9I TTAA 2 cut(s) 249, 363
TscAI CASTG 1 cut(s) 87
TseI GCWGC 4 cut(s) 139, 488, 491, 512
TspDTI ATGAA 1 cut(s) 545
TspRI CASTG 1 cut(s) 87
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 2 cut(s) 71, 239
XceI RCATGY 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.