RLG00000019710

Isochorismatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006367
Physical Location & Seq
Forward (+)
55818046 .. 55819679
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019710

Sequence Viewer

Length: 342 bp
ATGGGAGACAAATGGAAGCACACAGCTCTCCTCGTCATTGACATGCAGATGGGGGACTATAAATTAATCAAGACCTGGTTAAAGAATGCACTAGCTACACACCTTGATTCCTATCTTAAGAGTAATGGAGTTGACAGTTTGGTTGTCATTGGTGTTCAGACTCCAAACTGCATTAGGCAGACTGTGTTTCATGGTGTAGCTTTGGATTACAAATCTATTACAGTTATTGTTGATGCCACAGCTGCTGCTACAGATGACATACATGCTGCCAATATATTTGACATGAAGAACGTTGGAGTTGCAACACCAACCTTACAAGAATGGTCTGAATCGGGCGCTTGA

Protein Analysis

114

Amino Acids

12.32

Weight (kDa)

5.67

Isoelectric Point (pI)

15.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Isochorismatase PF00857 22 - 102 7.7e-15 Isochorismatase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 291
AflII CTTAAG 1 cut(s) 116
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 4 cut(s) 26, 95, 200, 242
AluI AGCT 4 cut(s) 26, 95, 200, 242
AlwNI CAGNNNCTG 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 242, 245, 266
AseI ATTAAT 1 cut(s) 65
AspLEI GCGC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 229, 232, 253
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 76
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 339
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 3 cut(s) 243, 246, 267
BlsI GCNGC 3 cut(s) 244, 247, 268
Bme1390I CCNGG 1 cut(s) 76
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 229, 232, 253
BslFI GGGAC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 3 cut(s) 137, 184, 223
BstAFI CTTAAG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 2 cut(s) 46, 266
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 229, 232, 253
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 338
CsiI ACCWGGT 1 cut(s) 74
CviAII CATG 4 cut(s) 43, 191, 263, 283
CviJI RGCY 4 cut(s) 26, 95, 200, 242
CviKI_1 RGCY 4 cut(s) 26, 95, 200, 242
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 4 cut(s) 46, 194, 266, 286
FaiI YATR 7 cut(s) 44, 60, 192, 260, 264, 275, 284
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 42, 190, 262, 282
Fnu4HI GCNGC 3 cut(s) 243, 246, 267
Fsp4HI GCNGC 3 cut(s) 243, 246, 267
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 337
GluI GCNGC 3 cut(s) 243, 246, 267
HaeII RGCGCY 1 cut(s) 339
HhaI GCGC 1 cut(s) 338
Hin1II CATG 4 cut(s) 46, 194, 266, 286
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 107, 160, 329
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 159, 328
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4III ACNGT 3 cut(s) 137, 184, 223
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 4 cut(s) 46, 89, 171, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 46, 194, 266, 286
HspAI GCGC 1 cut(s) 336
LpnPI CCDG 2 cut(s) 61, 88
Lsp1109I GCAGC 3 cut(s) 229, 232, 253
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 74
MaeI CTAG 1 cut(s) 92
MaeII ACGT 1 cut(s) 291
MboII GAAGA 1 cut(s) 298
MluCI AATT 1 cut(s) 62
MlyI GAGTC 1 cut(s) 154
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 1 cut(s) 41
MseI TTAA 3 cut(s) 65, 80, 117
MslI CAYNNNNRTG 2 cut(s) 41, 47
MspA1I CMGCKG 1 cut(s) 242
MspCI CTTAAG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 242
NlaIII CATG 4 cut(s) 46, 194, 266, 286
NspI RCATGY 2 cut(s) 46, 266
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 2 cut(s) 107, 329
PkrI GCNGC 3 cut(s) 244, 247, 268
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 65
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 242
RseI CAYNNNNRTG 2 cut(s) 41, 47
SaqAI TTAA 3 cut(s) 65, 80, 117
SatI GCNGC 3 cut(s) 243, 246, 267
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 76
SetI ASST 8 cut(s) 28, 77, 97, 105, 202, 244, 294, 314
SexAI ACCWGGT 1 cut(s) 74
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 2 cut(s) 41, 47
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 1 cut(s) 62
SspMI CTAG 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 3 cut(s) 137, 184, 223
TaiI ACGT 1 cut(s) 294
TasI AATT 1 cut(s) 62
TfiI GAWTC 2 cut(s) 107, 329
Tru1I TTAA 3 cut(s) 65, 80, 117
Tru9I TTAA 3 cut(s) 65, 80, 117
TseI GCWGC 3 cut(s) 242, 245, 266
TspDTI ATGAA 2 cut(s) 179, 299
Vha464I CTTAAG 1 cut(s) 116
VspI ATTAAT 1 cut(s) 65
XceI RCATGY 2 cut(s) 46, 266
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.