Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004296

Physical Location & Seq

Genomic Coordinates Reverse (-)

21131025 .. 21132685

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1214600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGAAGAAGGGAGAGACACTGTCGGTGGCGATCGTTGGTTACTTGGTTCTAGGGTTGCTGGTGGGGCAATGTAGTGCCGTCGAGAATCCAGAATGCTACGCGGGCTGTCTGAATAAATGTAAGAGCAGCAGAGGTATGATGCTTCTCGCATGTGGTAGTGCATGCGCCCTTCAATGCCTGTTCTCAAGTCCTTCTTTACTCAGTGTCCCCAAAGACAATCACTATTTCTGCAAGCTTGGATGTTCTGCTTCCTTGTGTAACAGTTTCTTGGATGCAGAAAACCCAGAAATTACAGAAAAAGTTGGCGGATGTATGGATTCTTGCTCAGACAGATGCGCTACCATGAACACCATGAACTTACCACCTAATAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.33

Weight (kDa)

5.26

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35698
fragaria_vesca	FvH4_6g30990
malus_domestica	MD09G1214500.v1.1 MD09G1214600.v1.1 MD17G1196900.v1.1
prunus_persica	Prupe.3G072600_v2.0.a1 Prupe.3G072700_v2.0.a1 Prupe.3G072800_v2.0.a1 Prupe.3G072900_v2.0.a1 Prupe.3G073000_v2.0.a1 Prupe.3G073100_v2.0.a1 Prupe.3G073200_v2.0.a1 Prupe.3G073800_v2.0.a1 Prupe.6G180200_v2.0.a1
pyrus_communis	pycom09g13140 pycom17g20200
rosa_chinensis	RchiOBHm_Chr7g0236281
rosa_laevigata	RLG00000001091 RLG00000019664
rosa_multiflora	Rmu_sc0000765.1_g000025
rosa_roxburghii	Rroxscaffold_2G00106990 Rroxscaffold_3G00225280
rosa_rugosa	Rorug02G0345300
rosa_samantha	Rh2AG391300 Rh2BG398800 Rh2CG378300 Rh2DG413900 Rh7AG450100 Rh7CG470000 Rh7DG439400
rosa_wichuraiana	Rw2G032050 Rw7G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AciI	CCGC	2 cut(s)	104, 309
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	129
AspLEI	GCGC	2 cut(s)	170, 341
BbvI	GCAGC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	53
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
BmsI	GCATC	3 cut(s)	132, 265, 326
BpuEI	CTTGAG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	248, 280, 317
BseMI	GCAATG	1 cut(s)	77
BseMII	CTCAG	2 cut(s)	217, 342
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	101
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	2 cut(s)	104, 309
BspCNI	CTCAG	2 cut(s)	216, 341
BspFNI	CGCG	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	77
BssMI	GATC	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	24, 266
BstC8I	GCNNGC	3 cut(s)	106, 166, 236
BstDEI	CTNAG	2 cut(s)	203, 328
BstF5I	GGATG	3 cut(s)	248, 280, 317
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	170, 341
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	33
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 105
BstNSI	RCATGY	2 cut(s)	156, 168
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	248, 280, 317
BtsIMutI	CAGTG	2 cut(s)	20, 211
Cac8I	GCNNGC	3 cut(s)	106, 166, 236
CfoI	GCGC	2 cut(s)	170, 341
CviAII	CATG	4 cut(s)	153, 165, 346, 355
CviJI	RGCY	2 cut(s)	108, 238
CviKI_1	RGCY	2 cut(s)	108, 238
DdeI	CTNAG	2 cut(s)	203, 328
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	324
FaeI	CATG	4 cut(s)	156, 168, 349, 358
FaiI	YATR	6 cut(s)	140, 154, 166, 317, 347, 356
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	152, 164, 345, 354
FauI	CCCGC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	3 cut(s)	255, 287, 324
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	169, 340
GluI	GCNGC	1 cut(s)	130
HhaI	GCGC	2 cut(s)	170, 341
Hin1II	CATG	4 cut(s)	156, 168, 349, 358
Hin6I	GCGC	2 cut(s)	168, 339
HinP1I	GCGC	2 cut(s)	168, 339
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	88, 320
Hpy188I	TCNGA	2 cut(s)	114, 331
Hpy188III	TCNNGA	2 cut(s)	85, 92
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	4, 182, 204
HpyCH4III	ACNGT	2 cut(s)	24, 266
HpyCH4V	TGCA	3 cut(s)	164, 234, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 105
HpyF3I	CTNAG	2 cut(s)	203, 328
Hsp92II	CATG	4 cut(s)	156, 168, 349, 358
HspAI	GCGC	2 cut(s)	168, 339
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	47, 105, 194, 300
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	3 cut(s)	132, 265, 326
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	41, 260
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	2 cut(s)	291, 376
MnlI	CCTC	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	101
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	67, 105
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	4 cut(s)	156, 168, 349, 358
NspI	RCATGY	2 cut(s)	156, 168
PaeI	GCATGC	1 cut(s)	168
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	88, 320
PflFI	GACNNNGTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	131
Ple19I	CGATCG	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	22
PvuI	CGATCG	1 cut(s)	36
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	33
SetI	ASST	3 cut(s)	139, 240, 370
SfaNI	GCATC	3 cut(s)	132, 265, 326
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	2 cut(s)	291, 376
SsiI	CCGC	2 cut(s)	104, 309
SspMI	CTAG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	24, 266
TaqI	TCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	291, 376
TfiI	GAWTC	2 cut(s)	88, 320
TscAI	CASTG	2 cut(s)	27, 211
TseI	GCWGC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	362, 371
TspRI	CASTG	2 cut(s)	27, 211
Tth111I	GACNNNGTC	1 cut(s)	22
XceI	RCATGY	2 cut(s)	156, 168
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.