Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004296

Physical Location & Seq

Genomic Coordinates Reverse (-)

43084859 .. 43085705

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCAGCTGCTGTTTTCATGTTGAGTGGTGAAGCATCTCTTTCAACTCCTAAGCAGCCTGCATTTGTTTTTAGAAAAACACGAGTTCTAACCACAAAAACAAAAACCAAAAACCCGAAAGTTCTTCTCACCGAAATCTGCCGCAAGCACTTGCCTGCAACTTTCTGCCTACCTGCGTGCCTACTGCCCCAGCAGCCCCTAGCCCGAGCTAGCCAAGCCTTCGCTGCAGCCTGCTCCTTGCGCGCCCAGCGCTACGCGCCCCTGCGCTCCGTGCTGCCCGCCTGCGCGCCCGTGCGTCTGCAGCCCCGCGTCGCTGCCCTGCTGCTTCTGCAGCTCTGCCGCACATCTGCTGTCCCTGCAGCACCTACGCGCCCCTGCGCACGCATCCCTGCTGCCCCTGCTGCACCAACGCACACCGACTGCACCCTTCCCCTTTCCTGTGCACGTCCGTCTGTTTCCAGGCTACGAAACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

16.94

Weight (kDa)

11.1

Isoelectric Point (pI)

80.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35698
fragaria_vesca	FvH4_6g30990
malus_domestica	MD09G1214500.v1.1 MD09G1214600.v1.1 MD17G1196900.v1.1
prunus_persica	Prupe.3G072600_v2.0.a1 Prupe.3G072700_v2.0.a1 Prupe.3G072800_v2.0.a1 Prupe.3G072900_v2.0.a1 Prupe.3G073000_v2.0.a1 Prupe.3G073100_v2.0.a1 Prupe.3G073200_v2.0.a1 Prupe.3G073800_v2.0.a1 Prupe.6G180200_v2.0.a1
pyrus_communis	pycom09g13140 pycom17g20200
rosa_chinensis	RchiOBHm_Chr7g0236281
rosa_laevigata	RLG00000001091 RLG00000019664
rosa_multiflora	Rmu_sc0000765.1_g000025
rosa_roxburghii	Rroxscaffold_2G00106990 Rroxscaffold_3G00225280
rosa_rugosa	Rorug02G0345300
rosa_samantha	Rh2AG391300 Rh2BG398800 Rh2CG378300 Rh2DG413900 Rh7AG450100 Rh7CG470000 Rh7DG439400
rosa_wichuraiana	Rw2G032050 Rw7G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	379
Acc36I	ACCTGC	1 cut(s)	181
AccII	CGCG	5 cut(s)	243, 257, 287, 309, 370
AciI	CCGC	4 cut(s)	142, 279, 307, 340
AfeI	AGCGCT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	45
AjiI	CACGTC	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	3 cut(s)	8, 209, 334
AluI	AGCT	3 cut(s)	8, 209, 334
Alw21I	GWGCWC	1 cut(s)	445
Alw44I	GTGCAC	1 cut(s)	441
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	204
Aor51HI	AGCGCT	1 cut(s)	251
ApaLI	GTGCAC	1 cut(s)	441
AspLEI	GCGC	9 cut(s)	243, 245, 252, 259, 267, 287, 289, 372, 380
AsuHPI	GGTGA	2 cut(s)	41, 121
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	445
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	460
BfaI	CTAG	3 cut(s)	200, 210, 475
BfmI	CTRYAG	4 cut(s)	225, 299, 329, 357
BfoI	RGCGCY	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	446
BmrFI	CCNGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	44, 393
BmtI	GCTAGC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	384
BsePI	GCGCGC	2 cut(s)	241, 285
BseSI	GKGCMC	1 cut(s)	445
BseYI	CCCAGC	2 cut(s)	189, 246
BsgI	GTGCAG	2 cut(s)	387, 406
Bsh1236I	CGCG	5 cut(s)	243, 257, 287, 309, 370
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	338
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	445
BspACI	CCGC	4 cut(s)	142, 279, 307, 340
BspFNI	CGCG	5 cut(s)	243, 257, 287, 309, 370
BspMAI	CTGCAG	4 cut(s)	229, 303, 333, 361
BspMI	ACCTGC	1 cut(s)	181
BspOI	GCTAGC	1 cut(s)	213
BssHII	GCGCGC	2 cut(s)	241, 285
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	5 cut(s)	243, 257, 287, 309, 370
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	9 cut(s)	243, 245, 252, 259, 267, 287, 289, 372, 380
BstNI	CCWGG	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	4 cut(s)	225, 299, 329, 357
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	5 cut(s)	243, 257, 287, 309, 370
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	9 cut(s)	243, 245, 252, 259, 267, 287, 289, 372, 380
CseI	GACGC	2 cut(s)	284, 298
CviAII	CATG	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	458
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	1 cut(s)	18
FauI	CCCGC	2 cut(s)	286, 314
FokI	GGATG	1 cut(s)	371
FspBI	CTAG	3 cut(s)	200, 210, 475
FspI	TGCGCA	1 cut(s)	379
GlaI	GCGC	9 cut(s)	242, 244, 251, 258, 266, 286, 288, 371, 379
GsaI	CCCAGC	2 cut(s)	193, 250
HaeII	RGCGCY	1 cut(s)	253
HgaI	GACGC	2 cut(s)	284, 298
HhaI	GCGC	9 cut(s)	243, 245, 252, 259, 267, 287, 289, 372, 380
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	9 cut(s)	241, 243, 250, 257, 265, 285, 287, 370, 378
HinP1I	GCGC	9 cut(s)	241, 243, 250, 257, 265, 285, 287, 370, 378
HphI	GGTGA	2 cut(s)	41, 121
Hpy166II	GTNNAC	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	229, 437
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	9 cut(s)	62, 158, 227, 301, 331, 359, 404, 423, 443
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	9 cut(s)	241, 243, 250, 257, 265, 285, 287, 370, 378
LmnI	GCTCC	2 cut(s)	239, 272
LweI	GCATC	2 cut(s)	44, 393
MaeI	CTAG	3 cut(s)	200, 210, 475
MaeII	ACGT	1 cut(s)	445
MboII	GAAGA	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	5 cut(s)	243, 257, 287, 309, 370
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	379
PauI	GCGCGC	2 cut(s)	241, 285
Psp6I	CCWGG	1 cut(s)	458
PspFI	CCCAGC	2 cut(s)	189, 246
PspGI	CCWGG	1 cut(s)	458
PstI	CTGCAG	4 cut(s)	229, 303, 333, 361
PstNI	CAGNNNCTG	1 cut(s)	11
PteI	GCGCGC	2 cut(s)	241, 285
PvuII	CAGCTG	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	460
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	6 cut(s)	10, 175, 211, 336, 367, 448
SfaNI	GCATC	2 cut(s)	44, 393
SfcI	CTRYAG	4 cut(s)	225, 299, 329, 357
SsiI	CCGC	4 cut(s)	142, 279, 307, 340
SspMI	CTAG	3 cut(s)	200, 210, 475
StyD4I	CCNGG	1 cut(s)	458
TaiI	ACGT	1 cut(s)	448
TauI	GCSGC	2 cut(s)	144, 342
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	2 cut(s)	259, 438
VneI	GTGCAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	200, 210, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.