Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004296

Physical Location & Seq

Genomic Coordinates Reverse (-)

62512160 .. 62513562

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG439400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGACAAGATCGAGAAGAAGGGAGTCATATCTGTAACGATCATATCTTTCTTGGTGCTGTCTGTGGTTCTAGGCGGCCTTTCTACTGCATCGGAAGGCCCTGATTGCAGCACAGGTTGCAACTTATGTCTTTTCGCCATGGTGGCTGGCCCGTGGTGGGGTACCGGGTGTGCTGCAGCATGCGCGACAGGGTGCTTTATAGCTGACCGGGTTAATAATAATTCTCTGATCAGTATCCCCAAAAGTGACGAACACTACTTCTGCAACGTTGGATGTGCTTCTAACTTTTGTTCCAGTTTCTTGGCTAAACCAAATCCAGAGCTAGAGAAAAGATGCACGAATTCTTGCTCAGAGACTTGCAAGACCAAGAATACTTTACCTCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.65

Weight (kDa)

6.08

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35698
fragaria_vesca	FvH4_6g30990
malus_domestica	MD09G1214500.v1.1 MD09G1214600.v1.1 MD17G1196900.v1.1
prunus_persica	Prupe.3G072600_v2.0.a1 Prupe.3G072700_v2.0.a1 Prupe.3G072800_v2.0.a1 Prupe.3G072900_v2.0.a1 Prupe.3G073000_v2.0.a1 Prupe.3G073100_v2.0.a1 Prupe.3G073200_v2.0.a1 Prupe.3G073800_v2.0.a1 Prupe.6G180200_v2.0.a1
pyrus_communis	pycom09g13140 pycom17g20200
rosa_chinensis	RchiOBHm_Chr7g0236281
rosa_laevigata	RLG00000001091 RLG00000019664
rosa_multiflora	Rmu_sc0000765.1_g000025
rosa_roxburghii	Rroxscaffold_2G00106990 Rroxscaffold_3G00225280
rosa_rugosa	Rorug02G0345300
rosa_samantha	Rh2AG391300 Rh2BG398800 Rh2CG378300 Rh2DG413900 Rh7AG450100 Rh7CG470000 Rh7DG439400
rosa_wichuraiana	Rw2G032050 Rw7G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AccII	CGCG	1 cut(s)	185
AciI	CCGC	1 cut(s)	75
AclI	AACGTT	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	157, 158
AluBI	AGCT	2 cut(s)	203, 322
AluI	AGCT	2 cut(s)	203, 322
Alw26I	GTCTC	1 cut(s)	347
AoxI	GGCC	3 cut(s)	76, 97, 148
ApeKI	GCWGC	3 cut(s)	108, 173, 176
ApoI	RAATTY	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	98, 149
AsuC2I	CCSGG	2 cut(s)	166, 209
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	3 cut(s)	120, 160, 188
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	166, 209
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	2 cut(s)	71, 323
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	76, 109, 174, 177
BlsI	GCNGC	4 cut(s)	77, 110, 175, 178
Bme1390I	CCNGG	2 cut(s)	166, 209
BmgT120I	GGNCC	2 cut(s)	98, 149
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	166, 209
BmsI	GCATC	2 cut(s)	98, 323
BpuMI	CCSGG	2 cut(s)	166, 209
BsaBI	GATNNNNATC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	138, 152
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 158
Bse1I	ACTGG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	138, 152
BseGI	GGATG	1 cut(s)	278
BseJI	GATNNNNATC	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	157, 158
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	120, 160, 188
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	78, 99, 150
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	165, 208
BslI	CCNNNNNNNGG	2 cut(s)	157, 158
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	78, 99, 150
Bsp143I	GATC	3 cut(s)	9, 39, 228
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	78, 99, 150
BspCNI	CTCAG	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	138, 152
BssMI	GATC	3 cut(s)	9, 39, 228
BssT1I	CCWWGG	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	148, 181
BstDEI	CTNAG	1 cut(s)	349
BstDSI	CCRYGG	2 cut(s)	138, 152
BstF5I	GGATG	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	12, 42, 231
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	9, 39, 228
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 117, 143, 182
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	164, 207
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	120, 160, 188
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	78, 99, 150
BtgI	CCRYGG	2 cut(s)	138, 152
BtsCI	GGATG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	148, 181
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	98, 149
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	3 cut(s)	139, 180, 383
CviJI	RGCY	7 cut(s)	78, 99, 146, 150, 203, 305, 322
CviKI_1	RGCY	7 cut(s)	78, 99, 146, 150, 203, 305, 322
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	3 cut(s)	11, 41, 230
DpnII	GATC	3 cut(s)	9, 39, 228
Eco130I	CCWWGG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	142, 183, 386
FaiI	YATR	7 cut(s)	29, 44, 127, 140, 181, 200, 384
FatI	CATG	3 cut(s)	138, 179, 382
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	76, 109, 174, 177
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	76, 109, 174, 177
FspBI	CTAG	2 cut(s)	71, 323
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	4 cut(s)	76, 109, 174, 177
HaeIII	GGCC	3 cut(s)	78, 99, 150
HapII	CCGG	2 cut(s)	165, 208
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	142, 183, 386
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	2 cut(s)	165, 208
Hpy188I	TCNGA	3 cut(s)	94, 228, 352
Hpy188III	TCNNGA	3 cut(s)	13, 317, 383
HpyAV	CCTTC	2 cut(s)	13, 89
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	7 cut(s)	89, 108, 120, 176, 264, 336, 360
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 117, 143, 182
HpyF3I	CTNAG	1 cut(s)	349
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	142, 183, 386
HspAI	GCGC	1 cut(s)	183
KpnI	GGTACC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	9, 39, 228
LpnPI	CCDG	8 cut(s)	99, 114, 132, 174, 178, 221, 307, 330
Lsp1109I	GCAGC	3 cut(s)	120, 160, 188
LweI	GCATC	2 cut(s)	98, 323
MaeI	CTAG	2 cut(s)	71, 323
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	34, 245
MalI	GATC	3 cut(s)	11, 41, 230
MboI	GATC	3 cut(s)	9, 39, 228
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	2 cut(s)	220, 340
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	1 cut(s)	390
MseI	TTAA	1 cut(s)	213
MspI	CCGG	2 cut(s)	165, 208
MspR9I	CCNGG	2 cut(s)	166, 209
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	4 cut(s)	105, 117, 143, 182
NciI	CCSGG	2 cut(s)	166, 209
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	9, 39, 228
NlaIII	CATG	3 cut(s)	142, 183, 386
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	183
PaeI	GCATGC	1 cut(s)	183
PagI	TCATGA	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	77, 110, 175, 178
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp1406I	AACGTT	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	98, 149
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	76, 109, 174, 177
Sau3AI	GATC	3 cut(s)	9, 39, 228
Sau96I	GGNCC	2 cut(s)	98, 149
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	166, 209
SetI	ASST	5 cut(s)	118, 205, 270, 324, 382
SfaNI	GCATC	2 cut(s)	98, 323
SfcI	CTRYAG	1 cut(s)	174
SphI	GCATGC	1 cut(s)	183
Sse9I	AATT	2 cut(s)	220, 340
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	2 cut(s)	71, 323
StyD4I	CCNGG	2 cut(s)	164, 207
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	220, 340
TauI	GCSGC	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	3 cut(s)	108, 173, 176
Tsp45I	GTSAC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	2 cut(s)	71, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.