Prupe.3G072600_v2.0.a1

Thionin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004296
Physical Location & Seq
Reverse (-)
5219155 .. 5221399
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G072600.1

Sequence Viewer

Length: 462 bp
ATGGTGGCTTGTGTGGTGCTGGGATTGCTCACTGGCCAGTCCACAGCATTGTTCAAGGGCTGCTATCTTGTTTGTTTTGCCGGATGCATTCATGAACCACCCAAAAACCCTCTCACTTGCGTTGTCAAATGTGCGAAAGAGTGCTTCGGCTTACATTCTTCTCTGGGCATCCAAACAGACCCCAAGCACTTCTGCAAGCTTGGTTGTGCTGCCTCTTTGTGTGCCAATATCATCACAGCAGAAAACCCTGGCCAGTCCCAAGCAACTTTCCAAGAATGTTATGCTGGTTGCATGCTTGTATGTTTTATAAAACAACACAAGATTGGCTGCTTTGCAAAATGTCTGAAATCCTGCTTCGTAATTCCTACGGACATCCAAGCAAAACCCGAACACTACTGCAAGCTTGGTTGTGCTACATCTTTGTGTTCCAATATTAGCACAAAAGATAATATTAGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.34

Weight (kDa)

8.38

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AcoI YGGCCR 2 cut(s) 34, 250
AfaI GTAC 1 cut(s) 457
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 199, 403
AluI AGCT 2 cut(s) 199, 403
AoxI GGCC 2 cut(s) 34, 250
ApeKI GCWGC 3 cut(s) 60, 209, 327
BalI TGGCCA 2 cut(s) 36, 252
BbvI GCAGC 3 cut(s) 47, 196, 314
BciT130I CCWGG 1 cut(s) 249
BisI GCNGC 3 cut(s) 61, 210, 328
BlsI GCNGC 3 cut(s) 62, 211, 329
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 74, 177
BsaAI YACGTR 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 247
Bse1I ACTGG 3 cut(s) 37, 37, 253
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 3 cut(s) 89, 168, 372
BseNI ACTGG 3 cut(s) 37, 37, 253
BseXI GCAGC 3 cut(s) 47, 196, 314
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 2 cut(s) 36, 252
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 2 cut(s) 36, 252
BspANI GGCC 2 cut(s) 36, 252
BspHI TCATGA 1 cut(s) 91
BsrI ACTGG 3 cut(s) 37, 37, 253
BssECI CCNNGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 459
BstC8I GCNNGC 3 cut(s) 197, 293, 401
BstF5I GGATG 3 cut(s) 89, 168, 372
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 1 cut(s) 247
BstSNI TACGTA 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 47, 196, 314
BsuRI GGCC 2 cut(s) 36, 252
BtsCI GGATG 3 cut(s) 89, 168, 372
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 3 cut(s) 197, 293, 401
CciI TCATGA 1 cut(s) 91
Csp6I GTAC 1 cut(s) 456
CviAII CATG 2 cut(s) 92, 292
CviJI RGCY 8 cut(s) 8, 36, 60, 150, 199, 252, 327, 403
CviKI_1 RGCY 8 cut(s) 8, 36, 60, 150, 199, 252, 327, 403
CviQI GTAC 1 cut(s) 456
EaeI YGGCCR 2 cut(s) 34, 250
Eco105I TACGTA 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 89
FaeI CATG 2 cut(s) 95, 295
FaiI YATR 5 cut(s) 93, 282, 293, 301, 308
FaqI GGGAC 1 cut(s) 241
FatI CATG 2 cut(s) 91, 291
Fnu4HI GCNGC 3 cut(s) 61, 210, 328
FokI GGATG 3 cut(s) 96, 155, 359
Fsp4HI GCNGC 3 cut(s) 61, 210, 328
GluI GCNGC 3 cut(s) 61, 210, 328
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 2 cut(s) 36, 252
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 95, 295
HindIII AAGCTT 2 cut(s) 197, 401
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 5 cut(s) 87, 195, 291, 335, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 2 cut(s) 95, 295
Lsp1109I GCAGC 3 cut(s) 47, 196, 314
LweI GCATC 2 cut(s) 74, 177
MaeII ACGT 1 cut(s) 458
MboII GAAGA 1 cut(s) 150
MlsI TGGCCA 2 cut(s) 36, 252
MluCI AATT 1 cut(s) 360
MluNI TGGCCA 2 cut(s) 36, 252
MnlI CCTC 2 cut(s) 120, 223
Mox20I TGGCCA 2 cut(s) 36, 252
Mph1103I ATGCAT 1 cut(s) 89
MscI TGGCCA 2 cut(s) 36, 252
MslI CAYNNNNRTG 1 cut(s) 421
Msp20I TGGCCA 2 cut(s) 36, 252
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 25
NlaIII CATG 2 cut(s) 95, 295
NsiI ATGCAT 1 cut(s) 89
NspI RCATGY 1 cut(s) 295
PaeI GCATGC 1 cut(s) 295
PagI TCATGA 1 cut(s) 91
PctI GAATGC 1 cut(s) 87
PkrI GCNGC 3 cut(s) 62, 211, 329
Ppu21I YACGTR 1 cut(s) 459
PsiI TTATAA 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 247
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 421
SatI GCNGC 3 cut(s) 61, 210, 328
ScrFI CCNGG 1 cut(s) 249
SetI ASST 3 cut(s) 201, 405, 461
SfaNI GCATC 2 cut(s) 74, 177
SmiMI CAYNNNNRTG 1 cut(s) 421
SnaBI TACGTA 1 cut(s) 459
SphI GCATGC 1 cut(s) 295
Sse9I AATT 1 cut(s) 360
SspI AATATT 2 cut(s) 433, 451
StyD4I CCNGG 1 cut(s) 247
TaiI ACGT 1 cut(s) 461
TasI AATT 1 cut(s) 360
TscAI CASTG 1 cut(s) 37
TseI GCWGC 3 cut(s) 60, 209, 327
TspDTI ATGAA 2 cut(s) 80, 108
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 1 cut(s) 37
XceI RCATGY 1 cut(s) 295
Zsp2I ATGCAT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.