pycom09g13140

Thionin-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0004296
Physical Location & Seq
Reverse (-)
11690353 .. 11691347
995 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g13140.1

Sequence Viewer

Length: 441 bp
ATGTGGACATGTCCTCTGCCATGTAGCTTGGTTTCATTTGTCATATCTTGGTTTTCACTAGGCAAAGAGAATAATAGTAAGATGGATAAGAAGGGATTGAGGCCAGTACCGGTGGCTTATTTAGTGTTGGGGATGTTGATGCTGGTGGGGCAGTCCAGTGCTTCTTTCAAAAGCTGCTACGAGAGTTGCTTCATCCTCTGTGTCATCACTCCAAACCACTCCGTTAGCTACTGCAGTTTTCAGTGCTTGAAAGATTGCATCATACCAAGTAGATCTCCTTTAGATCATAGTAATATCCACAAAGACAATGTCTACTTCTGCAAACTTGGATGTGCTTCTTCCTTGTGTTCCAATCTCAGCACTAAACAAAACCCAGAGGTTGAGAAGGTAGGCGGCTGCGTGGATTCATGCTCAGAGACATGTACCATCAAGAATACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.02

Weight (kDa)

8.18

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AciI CCGC 1 cut(s) 393
AfaI GTAC 2 cut(s) 108, 424
AflIII ACRYGT 2 cut(s) 8, 419
AgeI ACCGGT 1 cut(s) 109
AgsI TTSAA 2 cut(s) 169, 250
AluBI AGCT 3 cut(s) 27, 174, 228
AluI AGCT 3 cut(s) 27, 174, 228
Alw26I GTCTC 1 cut(s) 410
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 174, 396
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AsiGI ACCGGT 1 cut(s) 109
BbvI GCAGC 2 cut(s) 161, 383
BccI CCATC 2 cut(s) 76, 434
BcoDI GTCTC 1 cut(s) 410
BfaI CTAG 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 232
BglII AGATCT 1 cut(s) 272
BisI GCNGC 3 cut(s) 175, 394, 397
BlsI GCNGC 3 cut(s) 176, 395, 398
BmsI GCATC 2 cut(s) 129, 267
BsaWI WCCGGW 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 104, 156
BseGI GGATG 3 cut(s) 138, 192, 335
BseMII CTCAG 2 cut(s) 370, 426
BseNI ACTGG 2 cut(s) 104, 156
BseXI GCAGC 2 cut(s) 161, 383
BshFI GGCC 1 cut(s) 103
BshTI ACCGGT 1 cut(s) 109
BsiSI CCGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 410
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 272, 283
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 369, 425
BspMAI CTGCAG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 2 cut(s) 104, 156
BssAI RCCGGY 1 cut(s) 109
BssMI GATC 2 cut(s) 272, 283
BstDEI CTNAG 2 cut(s) 356, 412
BstF5I GGATG 3 cut(s) 138, 192, 335
BstKTI GATC 2 cut(s) 275, 286
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 2 cut(s) 272, 283
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNSI RCATGY 2 cut(s) 12, 423
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 161, 383
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 138, 192, 335
BtsIMutI CAGTG 2 cut(s) 163, 248
Cfr10I RCCGGY 1 cut(s) 109
Csp6I GTAC 2 cut(s) 107, 423
CspAI ACCGGT 1 cut(s) 109
CviAII CATG 4 cut(s) 9, 21, 408, 420
CviJI RGCY 6 cut(s) 27, 103, 116, 174, 228, 396
CviKI_1 RGCY 6 cut(s) 27, 103, 116, 174, 228, 396
CviQI GTAC 2 cut(s) 107, 423
DdeI CTNAG 2 cut(s) 356, 412
DpnI GATC 2 cut(s) 274, 285
DpnII GATC 2 cut(s) 272, 283
FaeI CATG 4 cut(s) 12, 24, 411, 423
FaiI YATR 7 cut(s) 10, 22, 44, 263, 288, 409, 421
FatI CATG 4 cut(s) 8, 20, 407, 419
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 175, 394, 397
FokI GGATG 3 cut(s) 145, 179, 342
Fsp4HI GCNGC 3 cut(s) 175, 394, 397
FspBI CTAG 1 cut(s) 59
GluI GCNGC 3 cut(s) 175, 394, 397
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 110
Hin1II CATG 4 cut(s) 12, 24, 411, 423
HinfI GANTC 1 cut(s) 404
HpaII CCGG 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 6, 313
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 2 cut(s) 6, 313
HpyAV CCTTC 2 cut(s) 85, 379
HpyCH4V TGCA 3 cut(s) 234, 258, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 2 cut(s) 356, 412
Hsp92II CATG 4 cut(s) 12, 24, 411, 423
Kzo9I GATC 2 cut(s) 272, 283
LpnPI CCDG 5 cut(s) 117, 123, 128, 169, 387
Lsp1109I GCAGC 2 cut(s) 161, 383
LweI GCATC 2 cut(s) 129, 267
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 274, 285
MboI GATC 2 cut(s) 272, 283
MboII GAAGA 1 cut(s) 330
MflI RGATCY 1 cut(s) 272
MnlI CCTC 4 cut(s) 24, 93, 206, 370
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 2 cut(s) 272, 283
NlaIII CATG 4 cut(s) 12, 24, 411, 423
NspI RCATGY 2 cut(s) 12, 423
PciI ACATGT 2 cut(s) 8, 419
PfeI GAWTC 1 cut(s) 404
PflFI GACNNNGTC 1 cut(s) 308
PinAI ACCGGT 1 cut(s) 109
PkrI GCNGC 3 cut(s) 176, 395, 398
PscI ACATGT 2 cut(s) 8, 419
PstI CTGCAG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 2 cut(s) 108, 424
RsaNI GTAC 2 cut(s) 107, 423
SatI GCNGC 3 cut(s) 175, 394, 397
Sau3AI GATC 2 cut(s) 272, 283
SetI ASST 6 cut(s) 29, 176, 230, 381, 390, 440
SfaNI GCATC 2 cut(s) 129, 267
SfcI CTRYAG 1 cut(s) 232
SsiI CCGC 1 cut(s) 393
SspMI CTAG 1 cut(s) 59
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 1 cut(s) 404
TscAI CASTG 2 cut(s) 163, 248
TseI GCWGC 2 cut(s) 174, 396
TspDTI ATGAA 3 cut(s) 24, 181, 396
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 2 cut(s) 163, 248
Tth111I GACNNNGTC 1 cut(s) 308
XceI RCATGY 2 cut(s) 12, 423
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.