Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004296

Physical Location & Seq

Genomic Coordinates Reverse (-)

63022573 .. 63034423

Gene Structure 11851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG470000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTATCAAAGGAGAAAGCCCAAAAAAACCAAGGCCCATCAGGATTTAGGGCAAGGCTCAAAACATCATCATCCAGGCGGCCTTTCTACTGCATCAGATGGCCCTGATTGCAGCACAGGTTGCAACTTATGTCTTCTCGCCATGGTGGCTGGCCCGTGGTGGAGTACCGGGTGTGCTGCAGCATGCGAGACAGGGTGCTTTATAGCTGACCGGGTTAATAATAATTCTCTGATCAGTATCCCCAAAAGTGACGAACACTACTTCTGCAACGTTGGATGTGCTTCTAACTTTTGTTCCAGTTTCTTGGCTAAACCAAATCCAGAGCTAGAGAAAAGATGCGCGAATTCTTGCTCAGAGACTTGCAAGACCAAGAATACTTTACCTCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.02

Weight (kDa)

8.27

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35698
fragaria_vesca	FvH4_6g30990
malus_domestica	MD09G1214500.v1.1 MD09G1214600.v1.1 MD17G1196900.v1.1
prunus_persica	Prupe.3G072600_v2.0.a1 Prupe.3G072700_v2.0.a1 Prupe.3G072800_v2.0.a1 Prupe.3G072900_v2.0.a1 Prupe.3G073000_v2.0.a1 Prupe.3G073100_v2.0.a1 Prupe.3G073200_v2.0.a1 Prupe.3G073800_v2.0.a1 Prupe.6G180200_v2.0.a1
pyrus_communis	pycom09g13140 pycom17g20200
rosa_chinensis	RchiOBHm_Chr7g0236281
rosa_laevigata	RLG00000001091 RLG00000019664
rosa_multiflora	Rmu_sc0000765.1_g000025
rosa_roxburghii	Rroxscaffold_2G00106990 Rroxscaffold_3G00225280
rosa_rugosa	Rorug02G0345300
rosa_samantha	Rh2AG391300 Rh2BG398800 Rh2CG378300 Rh2DG413900 Rh7AG450100 Rh7CG470000 Rh7DG439400
rosa_wichuraiana	Rw2G032050 Rw7G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	341
AciI	CCGC	1 cut(s)	78
AclI	AACGTT	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	343
AfaI	GTAC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	206, 325
AluI	AGCT	2 cut(s)	206, 325
Alw26I	GTCTC	2 cut(s)	182, 350
AoxI	GGCC	4 cut(s)	33, 79, 100, 151
ApeKI	GCWGC	3 cut(s)	111, 176, 179
ApoI	RAATTY	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	3 cut(s)	34, 101, 152
AsuC2I	CCSGG	2 cut(s)	169, 212
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	3 cut(s)	123, 163, 191
BccI	CCATC	2 cut(s)	45, 92
BciT130I	CCWGG	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	248
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	2 cut(s)	169, 212
BcoDI	GTCTC	2 cut(s)	182, 350
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	4 cut(s)	79, 112, 177, 180
BlsI	GCNGC	4 cut(s)	80, 113, 178, 181
Bme1390I	CCNGG	3 cut(s)	75, 169, 212
BmgT120I	GGNCC	3 cut(s)	34, 101, 152
BmrFI	CCNGG	3 cut(s)	75, 169, 212
BmsI	GCATC	2 cut(s)	101, 326
BpiI	GAAGAC	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	169, 212
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	30, 141, 155
Bse1I	ACTGG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	3 cut(s)	30, 141, 155
BseGI	GGATG	2 cut(s)	70, 281
BseJI	GATNNNNATC	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	3 cut(s)	123, 163, 191
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	4 cut(s)	35, 81, 102, 153
BsiSI	CCGG	2 cut(s)	168, 211
BsmAI	GTCTC	2 cut(s)	182, 350
BsnI	GGCC	4 cut(s)	35, 81, 102, 153
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	35, 81, 102, 153
BspCNI	CTCAG	1 cut(s)	365
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	3 cut(s)	30, 141, 155
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	30, 141
Bst2UI	CCWGG	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	151, 184
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	2 cut(s)	141, 155
BstF5I	GGATG	2 cut(s)	70, 281
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	2 cut(s)	182, 350
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 120, 146
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	3 cut(s)	73, 167, 210
BstSFI	CTRYAG	1 cut(s)	177
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	123, 163, 191
BstV2I	GAAGAC	1 cut(s)	125
BstXI	CCANNNNNNTGG	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	4 cut(s)	35, 81, 102, 153
BtgI	CCRYGG	2 cut(s)	141, 155
BtsCI	GGATG	2 cut(s)	70, 281
Cac8I	GCNNGC	2 cut(s)	151, 184
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	34, 101, 152
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	3 cut(s)	142, 183, 386
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	30, 141
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	30, 141
ErhI	CCWWGG	2 cut(s)	30, 141
FaeI	CATG	3 cut(s)	145, 186, 389
FaiI	YATR	5 cut(s)	130, 143, 184, 203, 387
FatI	CATG	3 cut(s)	141, 182, 385
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	79, 112, 177, 180
FokI	GGATG	2 cut(s)	57, 288
Fsp4HI	GCNGC	4 cut(s)	79, 112, 177, 180
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	4 cut(s)	79, 112, 177, 180
HaeIII	GGCC	4 cut(s)	35, 81, 102, 153
HapII	CCGG	2 cut(s)	168, 211
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	145, 186, 389
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HpaII	CCGG	2 cut(s)	168, 211
Hpy188I	TCNGA	3 cut(s)	97, 231, 355
Hpy188III	TCNNGA	3 cut(s)	41, 320, 386
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	92, 111, 123, 179, 267, 363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 120, 146
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	145, 186, 389
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	231
Lsp1109I	GCAGC	3 cut(s)	123, 163, 191
LweI	GCATC	2 cut(s)	101, 326
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	2 cut(s)	223, 343
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	1 cut(s)	393
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	168, 211
MspR9I	CCNGG	3 cut(s)	75, 169, 212
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	108, 120, 146
NciI	CCSGG	2 cut(s)	169, 212
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	3 cut(s)	145, 186, 389
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	186
PaeI	GCATGC	1 cut(s)	186
PagI	TCATGA	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	80, 113, 178, 181
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspPI	GGNCC	3 cut(s)	34, 101, 152
PstI	CTGCAG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	79, 112, 177, 180
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	3 cut(s)	34, 101, 152
ScrFI	CCNGG	3 cut(s)	75, 169, 212
SetI	ASST	5 cut(s)	121, 208, 273, 327, 385
SfaNI	GCATC	2 cut(s)	101, 326
SfcI	CTRYAG	1 cut(s)	177
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	2 cut(s)	223, 343
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	326
StyD4I	CCNGG	3 cut(s)	73, 167, 210
StyI	CCWWGG	2 cut(s)	30, 141
TaiI	ACGT	1 cut(s)	273
TasI	AATT	2 cut(s)	223, 343
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	111, 176, 179
Tsp45I	GTSAC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	343
XceI	RCATGY	1 cut(s)	186
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.