Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004296

Physical Location & Seq

Genomic Coordinates Reverse (-)

23591525 .. 23592011

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1196900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGGGGAAAAGTGTTAGGAATGCAGTGCTGGTTTGTTTAGTGGTGGGATTGTTGATGGGGCACTGCACAGCCGGCTTATTTTTCAAACTTTGCTATGGTGCTTGCTTTACTATTTGCATGGTAAAAAAACCGCACAATCCTCTCACATGTGGGTTTAATTGCTTGAAAAAGTGCGCCGCACCTGCTCAGACTTTGGACTTCCAAACAAACCCTCACCACTTTTGCAAGCTTGGCTGTGCTACCTCTTTGTGCACCCATATCAGCACCAAAGATAACCCTAATGCAGAACTGGTGGGAAAATGTGTGGATTCTTGCTCGGGGACTTGCAGTACCAATTATAGTCACGCTTCAACGAAAAACCAAGAGTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006952 GO:0008150 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.44

Weight (kDa)

8.55

Isoelectric Point (pI)

23.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35698
fragaria_vesca	FvH4_6g30990
malus_domestica	MD09G1214500.v1.1 MD09G1214600.v1.1 MD17G1196900.v1.1
prunus_persica	Prupe.3G072600_v2.0.a1 Prupe.3G072700_v2.0.a1 Prupe.3G072800_v2.0.a1 Prupe.3G072900_v2.0.a1 Prupe.3G073000_v2.0.a1 Prupe.3G073100_v2.0.a1 Prupe.3G073200_v2.0.a1 Prupe.3G073800_v2.0.a1 Prupe.6G180200_v2.0.a1
pyrus_communis	pycom09g13140 pycom17g20200
rosa_chinensis	RchiOBHm_Chr7g0236281
rosa_laevigata	RLG00000001091 RLG00000019664
rosa_multiflora	Rmu_sc0000765.1_g000025
rosa_roxburghii	Rroxscaffold_2G00106990 Rroxscaffold_3G00225280
rosa_rugosa	Rorug02G0345300
rosa_samantha	Rh2AG391300 Rh2BG398800 Rh2CG378300 Rh2DG413900 Rh7AG450100 Rh7CG470000 Rh7DG439400
rosa_wichuraiana	Rw2G032050 Rw7G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AciI	CCGC	2 cut(s)	134, 180
AfaI	GTAC	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	88, 169, 354
AluBI	AGCT	1 cut(s)	232
AluI	AGCT	1 cut(s)	232
Alw21I	GWGCWC	1 cut(s)	257
Alw44I	GTGCAC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	319
ApaLI	GTGCAC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	319
BaeGI	GKGCMC	2 cut(s)	66, 257
Bbv12I	GWGCWC	1 cut(s)	257
BccI	CCATC	1 cut(s)	52
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	319
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	297
BseSI	GKGCMC	2 cut(s)	66, 257
BsgI	GTGCAG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	66, 257
BspACI	CCGC	2 cut(s)	134, 180
BspCNI	CTCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	74
BstC8I	GCNNGC	3 cut(s)	76, 106, 230
BstDEI	CTNAG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 185, 234
BstNSI	RCATGY	1 cut(s)	153
BstSLI	GKGCMC	2 cut(s)	66, 257
BtsI	GCAGTG	2 cut(s)	33, 64
BtsIMutI	CAGTG	2 cut(s)	33, 64
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	3 cut(s)	76, 106, 230
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	121, 150
CviJI	RGCY	4 cut(s)	74, 78, 232, 237
CviKI_1	RGCY	4 cut(s)	74, 78, 232, 237
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	319
FaeI	CATG	2 cut(s)	124, 153
FaiI	YATR	5 cut(s)	99, 122, 151, 261, 342
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	2 cut(s)	120, 149
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	180
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	124, 153
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	2 cut(s)	192, 377
Hpy8I	GTNNAC	1 cut(s)	255
HpyCH4V	TGCA	7 cut(s)	26, 69, 120, 228, 255, 287, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 185, 234
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	124, 153
HspAI	GCGC	1 cut(s)	177
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
LpnPI	CCDG	4 cut(s)	17, 88, 198, 278
MaeIII	GTNAC	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	66, 257
MluCI	AATT	2 cut(s)	160, 337
MnlI	CCTC	3 cut(s)	153, 225, 256
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	75, 185, 234
NaeI	GCCGGC	1 cut(s)	76
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	124, 153
NmuCI	GTSAC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	153
PaqCI	CACCTGC	1 cut(s)	193
PciI	ACATGT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	149
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	66, 257
SetI	ASST	3 cut(s)	187, 234, 248
Sse9I	AATT	2 cut(s)	160, 337
SsiI	CCGC	2 cut(s)	134, 180
TasI	AATT	2 cut(s)	160, 337
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	33, 71
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	33, 71
VneI	GTGCAC	1 cut(s)	253
XceI	RCATGY	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.