Prupe.3G073000_v2.0.a1

Thionin-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004296
Physical Location & Seq
Reverse (-)
5245894 .. 5247171
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G073000.1

Sequence Viewer

Length: 366 bp
ATGGAGAATAGAGTTATGTGTTTAGTGATGGGTTGCTTGGTGTTAGGGTTTCTGGTGGCGCAGAGCAGTGCTGTTGACAATCCAGGATGCTACGGTAATTGCGTGGATAAATGTAGGAAAACCAAAGGCCTTTTTGGGGTTGCCGCATGTGGCGTTATATGCATAGCTGAATGTGCGTTCGACAGTCCTTCTTTACATAGTGTCCCCAAAAACAGTCACTACTTCTGCAAGGTTGGATGTGCTTCTTCCTTGTGTGCCAGTTTATTGGATCAAGAAAACCCAGATATTGAGAAAGTGGGCGGCTGTGTAGATTCTTGCTCAGACAGATGCGCCTCGAATACCTTCTTACCACCAAATAAGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.75

Weight (kDa)

6.03

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 300
AclWI GGATC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 136
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
AlwI GGATC 1 cut(s) 276
AoxI GGCC 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 61, 332
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 84
BisI GCNGC 2 cut(s) 144, 301
BlsI GCNGC 2 cut(s) 145, 302
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 77, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 92, 242
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 258
BshFI GGCC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 2 cut(s) 144, 300
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 332
BspPI GGATC 1 cut(s) 276
BsrI ACTGG 1 cut(s) 258
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 95, 185, 215
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 2 cut(s) 92, 242
BstHHI GCGC 2 cut(s) 61, 332
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 159, 173
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 265
BsuRI GGCC 1 cut(s) 129
BtsCI GGATG 2 cut(s) 92, 242
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
CfoI GCGC 2 cut(s) 61, 332
CviAII CATG 1 cut(s) 147
CviJI RGCY 3 cut(s) 129, 167, 303
CviKI_1 RGCY 3 cut(s) 129, 167, 303
DdeI CTNAG 1 cut(s) 319
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 164
FaeI CATG 1 cut(s) 150
FaiI YATR 6 cut(s) 17, 148, 158, 160, 164, 198
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 144, 301
FokI GGATG 2 cut(s) 99, 249
Fsp4HI GCNGC 2 cut(s) 144, 301
GlaI GCGC 2 cut(s) 60, 331
GluI GCNGC 2 cut(s) 144, 301
HaeIII GGCC 1 cut(s) 129
HhaI GCGC 2 cut(s) 61, 332
Hin1II CATG 1 cut(s) 150
Hin6I GCGC 2 cut(s) 59, 330
HinP1I GCGC 2 cut(s) 59, 330
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 198, 352
HpyCH4III ACNGT 3 cut(s) 95, 185, 215
HpyCH4V TGCA 2 cut(s) 162, 228
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 173
HpyF3I CTNAG 1 cut(s) 319
Hsp92II CATG 1 cut(s) 150
HspAI GCGC 2 cut(s) 59, 330
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 5 cut(s) 38, 69, 96, 271, 294
LweI GCATC 2 cut(s) 77, 317
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 237
MluCI AATT 2 cut(s) 97, 361
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 1 cut(s) 343
Mph1103I ATGCAT 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 341
MspR9I CCNGG 1 cut(s) 84
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 159, 173
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 164
NspI RCATGY 1 cut(s) 150
PceI AGGCCT 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 2 cut(s) 145, 302
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
SatI GCNGC 2 cut(s) 144, 301
Sau3AI GATC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 84
SetI ASST 3 cut(s) 169, 234, 344
SfaNI GCATC 2 cut(s) 77, 317
Sse9I AATT 2 cut(s) 97, 361
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 2 cut(s) 144, 300
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 95, 185, 215
TaqI TCGA 2 cut(s) 180, 335
TasI AATT 2 cut(s) 97, 361
TauI GCSGC 2 cut(s) 146, 303
TfiI GAWTC 1 cut(s) 311
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspRI CASTG 1 cut(s) 73
XceI RCATGY 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 341
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.