Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004296

Physical Location & Seq

Genomic Coordinates Reverse (-)

5248546 .. 5249190

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGAAGAAGGGAGTGAATATGGGAGCAGCCATGGCTTCCTTGGTGTTGTTGGTCACGTTGACAGGGCGGTCCACTGCTGTCGACAATCCTGACTGCTACGCCAGCTGCCTCCCTAAGTGTGTCAAAGGTAGCATGTTTGGCGCTATCACGTGTGCCGGCACGTGCATAGCACAATGCTTGGCCATCAGCCCTTCTTTACTTAGTGTACCCAAAGACGATCACTACTTTTGTAAGCTTGGATGTGCTTCTTCCATGTGTGCCAGTTTGATCGATACAGAAAACCCAGAGATGGGGAAAGTGGGCGACTGTGTGGATTCTTGCTCAGAGAAATGCAGCATAAGTAGTACCTTACCACATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

12.52

Weight (kDa)

5.52

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35698
fragaria_vesca	FvH4_6g30990
malus_domestica	MD09G1214500.v1.1 MD09G1214600.v1.1 MD17G1196900.v1.1
prunus_persica	Prupe.3G072600_v2.0.a1 Prupe.3G072700_v2.0.a1 Prupe.3G072800_v2.0.a1 Prupe.3G072900_v2.0.a1 Prupe.3G073000_v2.0.a1 Prupe.3G073100_v2.0.a1 Prupe.3G073200_v2.0.a1 Prupe.3G073800_v2.0.a1 Prupe.6G180200_v2.0.a1
pyrus_communis	pycom09g13140 pycom17g20200
rosa_chinensis	RchiOBHm_Chr7g0236281
rosa_laevigata	RLG00000001091 RLG00000019664
rosa_multiflora	Rmu_sc0000765.1_g000025
rosa_roxburghii	Rroxscaffold_2G00106990 Rroxscaffold_3G00225280
rosa_rugosa	Rorug02G0345300
rosa_samantha	Rh2AG391300 Rh2BG398800 Rh2CG378300 Rh2DG413900 Rh7AG450100 Rh7CG470000 Rh7DG439400
rosa_wichuraiana	Rw2G032050 Rw7G037420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	183
AcvI	CACGTG	2 cut(s)	153, 165
AfaI	GTAC	2 cut(s)	210, 349
AfiI	CCNNNNNNNGG	2 cut(s)	292, 293
AflIII	ACRYGT	1 cut(s)	152
AluBI	AGCT	2 cut(s)	108, 238
AluI	AGCT	2 cut(s)	108, 238
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	29, 108, 336
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	185
BbrPI	CACGTG	2 cut(s)	153, 165
BbvI	GCAGC	3 cut(s)	41, 95, 348
BccI	CCATC	2 cut(s)	194, 286
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	3 cut(s)	30, 109, 337
BlsI	GCNGC	3 cut(s)	31, 110, 338
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	273
BsaAI	YACGTR	2 cut(s)	153, 165
BsaJI	CCNNGG	2 cut(s)	33, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 293
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	33, 42
BseGI	GGATG	1 cut(s)	248
BseLI	CCNNNNNNNGG	2 cut(s)	292, 293
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	41, 95, 348
BshFI	GGCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	292, 293
BsnI	GGCC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	220, 270
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	338
BspDI	ATCGAT	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	264
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	33, 42
BssMI	GATC	2 cut(s)	220, 270
BssT1I	CCWWGG	2 cut(s)	33, 42
Bst4CI	ACNGT	1 cut(s)	311
BstBAI	YACGTR	2 cut(s)	153, 165
BstC8I	GCNNGC	2 cut(s)	106, 160
BstDEI	CTNAG	3 cut(s)	117, 203, 325
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	223, 273
BstMBI	GATC	2 cut(s)	220, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 105, 141
BstNSI	RCATGY	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	41, 95, 348
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	106, 160
CfoI	GCGC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	273
Csp6I	GTAC	2 cut(s)	209, 348
CviAII	CATG	3 cut(s)	34, 136, 256
CviJI	RGCY	6 cut(s)	32, 38, 108, 185, 192, 238
CviKI_1	RGCY	6 cut(s)	32, 38, 108, 185, 192, 238
CviQI	GTAC	2 cut(s)	209, 348
DdeI	CTNAG	3 cut(s)	117, 203, 325
DpnI	GATC	2 cut(s)	222, 272
DpnII	GATC	2 cut(s)	220, 270
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	33, 42
Eco47I	GGWCC	1 cut(s)	72
Eco72I	CACGTG	2 cut(s)	153, 165
EcoT14I	CCWWGG	2 cut(s)	33, 42
ErhI	CCWWGG	2 cut(s)	33, 42
FaeI	CATG	3 cut(s)	37, 139, 259
FaiI	YATR	7 cut(s)	23, 35, 137, 170, 257, 341, 360
FatI	CATG	3 cut(s)	33, 135, 255
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	30, 109, 337
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	3 cut(s)	30, 109, 337
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	30, 109, 337
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	37, 139, 259
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HincII	GTYRAC	2 cut(s)	63, 85
HindII	GTYRAC	2 cut(s)	63, 85
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	4 cut(s)	63, 75, 85, 209
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	4 cut(s)	63, 75, 85, 209
HpyAV	CCTTC	2 cut(s)	4, 204
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	3 cut(s)	59, 152, 164
HpyCH4V	TGCA	2 cut(s)	168, 336
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 105, 141
HpyF3I	CTNAG	3 cut(s)	117, 203, 325
HpySE526I	ACGT	3 cut(s)	59, 152, 164
Hsp92II	CATG	3 cut(s)	37, 139, 259
HspAI	GCGC	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	158
KroNI	GCCGGC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	220, 270
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	6 cut(s)	51, 105, 118, 172, 277, 300
Lsp1109I	GCAGC	3 cut(s)	41, 95, 348
MaeII	ACGT	3 cut(s)	59, 152, 164
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	222, 272
MboI	GATC	2 cut(s)	220, 270
MboII	GAAGA	2 cut(s)	19, 243
MlsI	TGGCCA	1 cut(s)	185
MluNI	TGGCCA	1 cut(s)	185
MnlI	CCTC	1 cut(s)	122
Mox20I	TGGCCA	1 cut(s)	185
MroNI	GCCGGC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	35, 105, 141
NaeI	GCCGGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	220, 270
NgoMIV	GCCGGC	1 cut(s)	158
NlaIII	CATG	3 cut(s)	37, 139, 259
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	31, 110, 338
PmaCI	CACGTG	2 cut(s)	153, 165
PmlI	CACGTG	2 cut(s)	153, 165
Ppu21I	YACGTR	2 cut(s)	153, 165
PspCI	CACGTG	2 cut(s)	153, 165
PspPI	GGNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	108
RsaI	GTAC	2 cut(s)	210, 349
RsaNI	GTAC	2 cut(s)	209, 348
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	3 cut(s)	30, 109, 337
Sau3AI	GATC	2 cut(s)	220, 270
Sau96I	GGNCC	1 cut(s)	72
SetI	ASST	7 cut(s)	62, 110, 133, 155, 167, 240, 353
SinI	GGWCC	1 cut(s)	72
SsiI	CCGC	1 cut(s)	70
StyI	CCWWGG	2 cut(s)	33, 42
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	3 cut(s)	62, 155, 167
TaqI	TCGA	2 cut(s)	84, 273
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	29, 108, 336
Tsp45I	GTSAC	1 cut(s)	55
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	72
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.