Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Forward (+)

9377113 .. 9383287

Gene Structure 6175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1068000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGTCAAGTTACTATACTGGTTCGAATAATCAAAAAGATGCGACGCCAATGCTCTATTTAAGGGAACCTTTGCCTAGTTCTTATCCAGAAGCACCTTTTGTCTCTGGTAACATGATGATGTATATGAACCCTGGGTCATACTCGGACGCATTGGCTGGGAGTTCTCAGCAGCAAAACAACTGCATTGAAGGAGGCTCCTCGGTGGGGGGTTCAGATTCCAACCAGCAGCAGCATGATGTCCTATCGCATCTTGGTGGCACGCATATTGGAGAGCAGGGATTCAGTCCATGGAGGGAGGGTAGAAATGAGATGCTAGTTACGCATCCCATGGGTAGTTCTTCAGGTATTCTTCATGGTGGACAGAACTTGCAAGGTCAGGGGTTGTCCCTCAGCCTCAGTACACAAATCCCATCAGGAATGCAAATGCCTTCTATCTCATACCGGAATACCAATATGGGTTTTGCTTCATTCTTAAGTCCTAATGCATCCGTTTCAAGTGAGGGTGACGGTAGGAATGGTTCTTTTAGAGATGAGCAGCCAAGAAATGTTGAATATTTGCAATCTGGTTTTCCGGGAGGCAATCCAGATTCAAGTAAAGGGGATTTGTCTCCATATGGGATGTCGAGTATGGCAAGAACCATTTCCCATAACAAATACCTCAAAGCAGCACAACAGCTGCTTGATGAAGTCGTCAATGTCCAGAAAGCACTGAAGCAGCATGATAGAGAGAAGAACCAAAGCACACATGATCATCAGAAGAGTTTCAAGGAAGGAGATGATGGATCAAAGAATGATCTTGAGAGTGGAGTATCTACAAACCCTCAAGAGTTGGCCAGTAACTCAACGTGTGAGCTTTCACATGCCGAGAAACAAGAGTTGCAAAGCAAGTTGACGAAGCTTCTGTCTATGCTAGATGAGGTTGACAGAAGGTACAAGCAGTATTATCATCAGATGCAGATTGTTGTATCGTCATTTGATGTGATAGCGGGAATTGGGTCAGCTAAACCGTACACAGCTGTTGCCCTGCAGACTATTTCACGTCACTTTCGGTGCTTACGTGATGCAATCACAGGACAGATACGAGCAACCCGTAAAAGCCTTGGGGAGCAAGGTGCCTCTGGAAGCATGAAAGGAGTTGGAATATCTCGCCTCCGTTATGTGGACCAGCATCTCAGGCAGCAGAGAGCCCTTCAGCAGCTTGGCATGATGCAACAACATGCATGGAGACCACAAAGAGGTTTGCCGGAAAGCTCTGTCTCAATTCTGCGAGCATGGCTGTTTGAGCATTTCCTTCATCCCTATCCGAAGGATTCTGATAAGATCCTGCTAGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCAAACTGGTTTATCAATGCACGAGTGCGCCTTTGGAAGCCCATGGTTGAGGAGATGTACAAAGAAGAGGCTGGTGATGCTGAGATGGACTCCAACTCTTCATCTGAGAATACACCTCAAACAAAAAAAGGTGACAACACGGGGACCATGGAAGACGGAGTAGAAGATATGCAACCTAGCCCAAGTTCGACAGCCACTGAGAAATGCGGCACGGGACAATTTATGGACTCCAAATCTGACCATTTCCATGACGTGGAAATGGCTGGATCCACTGGATATGCCAATTTCCAGAATGTGACTCGTCATGAAGCTGAAGCTGAAGCTGAGTACGGGCTCGTCAAGCTTAGAGAGGGGCAAAGGCCCGGTATGGATGACTCGAGTCTCTTTTCTGATGCAAATGTTCAGACTGATAGGAACAGTGAGAGGTTTACGGCAGCTGCTGCTGCATACCACATGCCGGAGCTGGGGAGATTTGGAAGTGGAAGCGGGGTTTCTCTGACATTGGGATTGCAGCATTGTGACGGTGGCAGTAGCCTACCCATCTCTAGTGGGACTCATCACGGGTTTGTTTCCGTGAGAGGGGACGATTTGTACAACCCTGCAGCTTCTTCTGTAGGATCTGAGACAGCAGATTTTGAATGCCTTGACTCCGGGAACCAGCAGCAACACAGATTTAGTTCCTCCCATCTGTTACATGATTTCGTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

691

Amino Acids

75.61

Weight (kDa)

5.8

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	214 - 357	2.9e-49	Associated with HOX
Homeobox_KN	PF05920	425 - 464	1.7e-18	Homeobox KN domain
Homeodomain	PF00046	432 - 464	3.9e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1112
AccB7I	CCANNNNNTGG	1 cut(s)	1615
AciI	CCGC	3 cut(s)	986, 1569, 1848
AclWI	GGATC	5 cut(s)	790, 1315, 1623, 1636, 1987
AcoI	YGGCCR	1 cut(s)	831
AcuI	CTGAAG	5 cut(s)	324, 731, 1175, 1695, 1701
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	6 cut(s)	400, 932, 1010, 1421, 1691, 1955
AfiI	CCNNNNNNNGG	7 cut(s)	204, 1159, 1235, 1615, 1819, 1826, 1941
AflII	CTTAAG	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	845
AgsI	TTSAA	6 cut(s)	188, 495, 551, 591, 766, 2000
AhdI	GACNNNNNGTC	1 cut(s)	1353
AjiI	CACGTC	2 cut(s)	1040, 1615
AjnI	CCWGG	1 cut(s)	130
Alw26I	GTCTC	7 cut(s)	106, 612, 1219, 1261, 1366, 1748, 1979
AlwI	GGATC	5 cut(s)	790, 1315, 1623, 1636, 1987
AlwNI	CAGNNNCTG	2 cut(s)	1559, 1802
Ama87I	CYCGRG	1 cut(s)	1738
AoxI	GGCC	2 cut(s)	831, 1721
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
Asp700I	GAANNNNTTC	2 cut(s)	640, 761
AspLEI	GCGC	1 cut(s)	1392
AspS9I	GGNCC	3 cut(s)	1162, 1506, 1722
AsuC2I	CCSGG	3 cut(s)	573, 1725, 2014
AsuHPI	GGTGA	3 cut(s)	515, 1448, 1505
AsuII	TTCGAA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	1327
AvaI	CYCGRG	1 cut(s)	1738
AvaII	GGWCC	2 cut(s)	1162, 1506
BalI	TGGCCA	1 cut(s)	833
BamHI	GGATCC	1 cut(s)	1628
BanI	GGYRCC	1 cut(s)	1112
BanII	GRGCYC	2 cut(s)	1189, 1698
BauI	CACGAG	1 cut(s)	1383
BbsI	GAAGAC	1 cut(s)	1521
BbvCI	CCTCAGC	1 cut(s)	389
BccI	CCATC	5 cut(s)	418, 773, 1441, 1910, 2055
BceAI	ACGGC	1 cut(s)	1809
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	3 cut(s)	573, 1725, 2014
BcoDI	GTCTC	7 cut(s)	106, 612, 1219, 1261, 1366, 1748, 1979
BfaI	CTAG	7 cut(s)	75, 314, 911, 1328, 1350, 1539, 1908
BfmI	CTRYAG	3 cut(s)	1025, 1962, 1974
BfrI	CTTAAG	1 cut(s)	472
Bme1390I	CCNGG	4 cut(s)	132, 573, 1725, 2014
Bme18I	GGWCC	2 cut(s)	1162, 1506
BmeRI	GACNNNNNGTC	1 cut(s)	1353
BmeT110I	CYCGRG	1 cut(s)	1738
BmgBI	CACGTC	2 cut(s)	1040, 1615
BmgT120I	GGNCC	3 cut(s)	1162, 1506, 1722
BmiI	GGNNCC	6 cut(s)	66, 196, 1114, 1507, 1630, 2018
BmrFI	CCNGG	4 cut(s)	132, 573, 1725, 2014
BmtI	GCTAGC	1 cut(s)	1331
BoxI	GACNNNNGTC	1 cut(s)	1740
BpiI	GAAGAC	1 cut(s)	1521
BplI	GAGNNNNNCTC	2 cut(s)	1436, 1468
Bpu10I	CCTNAGC	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	807, 818
BpuMI	CCSGG	3 cut(s)	573, 1725, 2014
BsaAI	YACGTR	1 cut(s)	1058
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	2 cut(s)	1219, 1366
BsaJI	CCNNGG	8 cut(s)	130, 131, 198, 287, 327, 1099, 1404, 1509
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	7 cut(s)	204, 1159, 1235, 1615, 1819, 1826, 1941
Bse1I	ACTGG	4 cut(s)	22, 834, 1373, 1639
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	8 cut(s)	130, 131, 198, 287, 327, 1099, 1404, 1509
BseGI	GGATG	5 cut(s)	322, 485, 624, 1294, 1738
BseLI	CCNNNNNNNGG	7 cut(s)	204, 1159, 1235, 1615, 1819, 1826, 1941
BseMII	CTCAG	9 cut(s)	179, 403, 409, 1186, 1434, 1458, 1551, 1677, 1974
BseNI	ACTGG	4 cut(s)	22, 834, 1373, 1639
BseRI	GAGGAG	2 cut(s)	187, 1427
BseYI	CCCAGC	2 cut(s)	155, 1825
BshFI	GGCC	2 cut(s)	833, 1723
BshNI	GGYRCC	1 cut(s)	1112
BsiHKCI	CYCGRG	1 cut(s)	1738
BsiSI	CCGG	6 cut(s)	442, 572, 1244, 1725, 1820, 2013
BslFI	GGGAC	5 cut(s)	370, 1519, 1590, 1927, 1958
BslI	CCNNNNNNNGG	7 cut(s)	204, 1159, 1235, 1615, 1819, 1826, 1941
BsmAI	GTCTC	7 cut(s)	106, 612, 1219, 1261, 1366, 1748, 1979
BsmFI	GGGAC	5 cut(s)	370, 1519, 1590, 1927, 1958
BsmI	GAATGC	2 cut(s)	423, 2006
BsnI	GGCC	2 cut(s)	833, 1723
Bso31I	GGTCTC	2 cut(s)	1219, 1366
BsoBI	CYCGRG	1 cut(s)	1738
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	1189, 1698
Bsp1407I	TGTACA	2 cut(s)	1419, 1953
Bsp143I	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
Bsp19I	CCATGG	4 cut(s)	287, 327, 1404, 1509
BspACI	CCGC	3 cut(s)	986, 1569, 1848
BspANI	GGCC	2 cut(s)	833, 1723
BspCNI	CTCAG	9 cut(s)	178, 402, 408, 1185, 1435, 1459, 1552, 1678, 1975
BspHI	TCATGA	1 cut(s)	1666
BspLI	GGNNCC	6 cut(s)	66, 196, 1114, 1507, 1630, 2018
BspMAI	CTGCAG	2 cut(s)	1029, 1966
BspOI	GCTAGC	1 cut(s)	1331
BspPI	GGATC	5 cut(s)	790, 1315, 1623, 1636, 1987
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	1112
BspTI	CTTAAG	1 cut(s)	472
BspTNI	GGTCTC	2 cut(s)	1219, 1366
BsrGI	TGTACA	2 cut(s)	1419, 1953
BsrI	ACTGG	4 cut(s)	22, 834, 1373, 1639
BssECI	CCNNGG	8 cut(s)	130, 131, 198, 287, 327, 1099, 1404, 1509
BssMI	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	1383
BssT1I	CCWWGG	5 cut(s)	287, 327, 1099, 1404, 1509
Bst2BI	CACGAG	1 cut(s)	1383
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	509, 1008, 1781, 1886
Bst6I	CTCTTC	3 cut(s)	752, 1422, 1465
BstACI	GRCGYC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	1802
BstAUI	TGTACA	2 cut(s)	1419, 1953
BstBAI	YACGTR	1 cut(s)	1058
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	260, 1269, 1329
BstDSI	CCRYGG	4 cut(s)	287, 327, 1404, 1509
BstF5I	GGATG	5 cut(s)	322, 485, 624, 1294, 1738
BstHHI	GCGC	1 cut(s)	1392
BstKTI	GATC	6 cut(s)	751, 785, 796, 1323, 1631, 1982
BstMAI	GTCTC	7 cut(s)	106, 612, 1219, 1261, 1366, 1748, 1979
BstMBI	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
BstMWI	GCNNNNNNNGC	9 cut(s)	319, 1174, 1273, 1282, 1333, 1439, 1702, 1802, 1805
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	3 cut(s)	863, 1220, 1819
BstPAI	GACNNNNGTC	1 cut(s)	1740
BstSCI	CCNGG	4 cut(s)	130, 571, 1723, 2012
BstSFI	CTRYAG	3 cut(s)	1025, 1962, 1974
BstV2I	GAAGAC	1 cut(s)	1521
BstX2I	RGATCY	3 cut(s)	1320, 1628, 1979
BstYI	RGATCY	3 cut(s)	1320, 1628, 1979
BsuRI	GGCC	2 cut(s)	833, 1723
BtgI	CCRYGG	4 cut(s)	287, 327, 1404, 1509
BtrI	CACGTC	2 cut(s)	1040, 1615
BtsCI	GGATG	5 cut(s)	322, 485, 624, 1294, 1738
BtsIMutI	CAGTG	4 cut(s)	707, 1557, 1632, 1786
Cac8I	GCNNGC	3 cut(s)	260, 1269, 1329
CaiI	CAGNNNCTG	2 cut(s)	1559, 1802
CciI	TCATGA	1 cut(s)	1666
CfoI	GCGC	1 cut(s)	1392
Cfr13I	GGNCC	3 cut(s)	1162, 1506, 1722
CseI	GACGC	2 cut(s)	52, 155
Csp6I	GTAC	6 cut(s)	399, 931, 1009, 1420, 1690, 1954
CviQI	GTAC	6 cut(s)	399, 931, 1009, 1420, 1690, 1954
DpnI	GATC	6 cut(s)	750, 784, 795, 1322, 1630, 1981
DpnII	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
DriI	GACNNNNNGTC	1 cut(s)	1353
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	3 cut(s)	752, 1422, 1465
Eam1105I	GACNNNNNGTC	1 cut(s)	1353
EarI	CTCTTC	3 cut(s)	752, 1422, 1465
Eco130I	CCWWGG	5 cut(s)	287, 327, 1099, 1404, 1509
Eco24I	GRGCYC	2 cut(s)	1189, 1698
Eco31I	GGTCTC	2 cut(s)	1219, 1366
Eco47I	GGWCC	2 cut(s)	1162, 1506
Eco57I	CTGAAG	5 cut(s)	324, 731, 1175, 1695, 1701
Eco88I	CYCGRG	1 cut(s)	1738
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	5 cut(s)	287, 327, 1099, 1404, 1509
EcoT22I	ATGCAT	2 cut(s)	487, 1222
EcoT38I	GRGCYC	2 cut(s)	1189, 1698
ErhI	CCWWGG	5 cut(s)	287, 327, 1099, 1404, 1509
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FaqI	GGGAC	5 cut(s)	370, 1519, 1590, 1927, 1958
FauI	CCCGC	2 cut(s)	979, 1841
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	748
FokI	GGATG	5 cut(s)	309, 472, 631, 1281, 1745
FriOI	GRGCYC	2 cut(s)	1189, 1698
FspBI	CTAG	7 cut(s)	75, 314, 911, 1328, 1350, 1539, 1908
GlaI	GCGC	1 cut(s)	1391
GsaI	CCCAGC	2 cut(s)	159, 1829
HaeIII	GGCC	2 cut(s)	833, 1723
HapII	CCGG	6 cut(s)	442, 572, 1244, 1725, 1820, 2013
HgaI	GACGC	2 cut(s)	52, 155
HhaI	GCGC	1 cut(s)	1392
Hin1I	GRCGYC	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	1390
HinP1I	GCGC	1 cut(s)	1390
HincII	GTYRAC	2 cut(s)	891, 922
HindII	GTYRAC	2 cut(s)	891, 922
HindIII	AAGCTT	2 cut(s)	896, 1703
HpaII	CCGG	6 cut(s)	442, 572, 1244, 1725, 1820, 2013
HphI	GGTGA	3 cut(s)	515, 1448, 1505
Hpy166II	GTNNAC	7 cut(s)	359, 401, 891, 922, 1011, 1162, 1791
Hpy188III	TCNNGA	9 cut(s)	86, 414, 584, 700, 797, 824, 1119, 1651, 1667
Hpy8I	GTNNAC	7 cut(s)	359, 401, 891, 922, 1011, 1162, 1791
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	7 cut(s)	182, 438, 764, 921, 1199, 1300, 1301
HpyCH4III	ACNGT	4 cut(s)	509, 1008, 1781, 1886
HpyCH4IV	ACGT	4 cut(s)	845, 1039, 1057, 1614
HpyF10VI	GCNNNNNNNGC	9 cut(s)	319, 1174, 1273, 1282, 1333, 1439, 1702, 1802, 1805
HpySE526I	ACGT	4 cut(s)	845, 1039, 1057, 1614
Hsp92I	GRCGYC	1 cut(s)	44
HspAI	GCGC	1 cut(s)	1390
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
LmnI	GCTCC	3 cut(s)	200, 1105, 1822
MaeI	CTAG	7 cut(s)	75, 314, 911, 1328, 1350, 1539, 1908
MaeII	ACGT	4 cut(s)	845, 1039, 1057, 1614
MalI	GATC	6 cut(s)	750, 784, 795, 1322, 1630, 1981
MboI	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
MboII	GAAGA	9 cut(s)	330, 341, 742, 769, 1439, 1452, 1526, 1538, 1962
MflI	RGATCY	3 cut(s)	1320, 1628, 1979
MhlI	GDGCHC	2 cut(s)	1189, 1698
MlsI	TGGCCA	1 cut(s)	833
MluCI	AATT	4 cut(s)	990, 1260, 1580, 1645
MluNI	TGGCCA	1 cut(s)	833
MlyI	GAGTC	7 cut(s)	1445, 1583, 1654, 1730, 1750, 1909, 2003
MmeI	TCCRAC	3 cut(s)	243, 1117, 1479
Mox20I	TGGCCA	1 cut(s)	833
Mph1103I	ATGCAT	2 cut(s)	487, 1222
MroXI	GAANNNNTTC	2 cut(s)	640, 761
MscI	TGGCCA	1 cut(s)	833
MseI	TTAA	2 cut(s)	59, 473
MslI	CAYNNNNRTG	3 cut(s)	116, 252, 1608
Msp20I	TGGCCA	1 cut(s)	833
MspA1I	CMGCKG	3 cut(s)	676, 1016, 1799
MspCI	CTTAAG	1 cut(s)	472
MspI	CCGG	6 cut(s)	442, 572, 1244, 1725, 1820, 2013
MspR9I	CCNGG	4 cut(s)	132, 573, 1725, 2014
Mva1269I	GAATGC	2 cut(s)	423, 2006
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	9 cut(s)	319, 1174, 1273, 1282, 1333, 1439, 1702, 1802, 1805
NciI	CCSGG	3 cut(s)	573, 1725, 2014
NcoI	CCATGG	4 cut(s)	287, 327, 1404, 1509
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
NheI	GCTAGC	1 cut(s)	1327
NlaIV	GGNNCC	6 cut(s)	66, 196, 1114, 1507, 1630, 2018
NmeAIII	GCCGAG	1 cut(s)	889
NmuCI	GTSAC	5 cut(s)	503, 1040, 1493, 1657, 1880
NsiI	ATGCAT	2 cut(s)	487, 1222
NspI	RCATGY	3 cut(s)	863, 1220, 1819
NspV	TTCGAA	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	1738
PagI	TCATGA	1 cut(s)	1666
PasI	CCCWGGG	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	2 cut(s)	1054, 1087
PctI	GAATGC	2 cut(s)	423, 2006
PdmI	GAANNNNTTC	2 cut(s)	640, 761
PfeI	GAWTC	4 cut(s)	215, 279, 587, 1310
PflMI	CCANNNNNTGG	1 cut(s)	1615
PfoI	TCCNGGA	2 cut(s)	571, 2012
PleI	GAGTC	7 cut(s)	1445, 1583, 1654, 1730, 1749, 1909, 2003
PpsI	GAGTC	7 cut(s)	1445, 1583, 1654, 1730, 1749, 1909, 2003
Ppu21I	YACGTR	1 cut(s)	1058
PshAI	GACNNNNGTC	1 cut(s)	1740
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	2 cut(s)	155, 1825
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	6 cut(s)	66, 196, 1114, 1507, 1630, 2018
PspPI	GGNCC	3 cut(s)	1162, 1506, 1722
PspXI	VCTCGAGB	1 cut(s)	1738
PsrI	GAACNNNNNNTAC	2 cut(s)	502, 534
PstI	CTGCAG	2 cut(s)	1029, 1966
PstNI	CAGNNNCTG	2 cut(s)	1559, 1802
PsuI	RGATCY	3 cut(s)	1320, 1628, 1979
PvuII	CAGCTG	3 cut(s)	676, 1016, 1799
RsaI	GTAC	6 cut(s)	400, 932, 1010, 1421, 1691, 1955
RsaNI	GTAC	6 cut(s)	399, 931, 1009, 1420, 1690, 1954
RseI	CAYNNNNRTG	3 cut(s)	116, 252, 1608
SaqAI	TTAA	2 cut(s)	59, 473
Sau3AI	GATC	6 cut(s)	748, 782, 793, 1320, 1628, 1979
Sau96I	GGNCC	3 cut(s)	1162, 1506, 1722
SchI	GAGTC	7 cut(s)	1445, 1583, 1654, 1730, 1750, 1909, 2003
ScrFI	CCNGG	4 cut(s)	132, 573, 1725, 2014
SduI	GDGCHC	2 cut(s)	1189, 1698
SfcI	CTRYAG	3 cut(s)	1025, 1962, 1974
Sfr274I	CTCGAG	1 cut(s)	1738
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	2 cut(s)	1162, 1506
SlaI	CTCGAG	1 cut(s)	1738
SmiMI	CAYNNNNRTG	3 cut(s)	116, 252, 1608
SmlI	CTYRAG	4 cut(s)	472, 797, 822, 1738
SmoI	CTYRAG	4 cut(s)	472, 797, 822, 1738
Sse9I	AATT	4 cut(s)	990, 1260, 1580, 1645
SsiI	CCGC	3 cut(s)	986, 1569, 1848
SspI	AATATT	1 cut(s)	554
SspMI	CTAG	7 cut(s)	75, 314, 911, 1328, 1350, 1539, 1908
StyD4I	CCNGG	4 cut(s)	130, 571, 1723, 2012
StyI	CCWWGG	5 cut(s)	287, 327, 1099, 1404, 1509
TaaI	ACNGT	4 cut(s)	509, 1008, 1781, 1886
TaiI	ACGT	4 cut(s)	848, 1042, 1060, 1617
TaqI	TCGA	4 cut(s)	23, 623, 1550, 1739
TasI	AATT	4 cut(s)	990, 1260, 1580, 1645
TatI	WGTACW	3 cut(s)	398, 1419, 1953
TauI	GCSGC	1 cut(s)	1572
TfiI	GAWTC	4 cut(s)	215, 279, 587, 1310
Tru1I	TTAA	2 cut(s)	59, 473
Tru9I	TTAA	2 cut(s)	59, 473
TscAI	CASTG	4 cut(s)	714, 1564, 1639, 1786
TseFI	GTSAC	5 cut(s)	503, 1040, 1493, 1657, 1880
Tsp45I	GTSAC	5 cut(s)	503, 1040, 1493, 1657, 1880
TspDTI	ATGAA	8 cut(s)	140, 341, 456, 699, 1142, 1283, 1452, 1683
TspGWI	ACGGA	4 cut(s)	478, 1142, 1533, 1924
TspRI	CASTG	4 cut(s)	714, 1564, 1639, 1786
Van91I	CCANNNNNTGG	1 cut(s)	1615
Vha464I	CTTAAG	1 cut(s)	472
VpaK11BI	GGWCC	2 cut(s)	1162, 1506
XceI	RCATGY	3 cut(s)	863, 1220, 1819
XhoI	CTCGAG	1 cut(s)	1738
XmnI	GAANNNNTTC	2 cut(s)	640, 761
XspI	CTAG	7 cut(s)	75, 314, 911, 1328, 1350, 1539, 1908
Zsp2I	ATGCAT	2 cut(s)	487, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.