Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Forward (+)

49792243 .. 49798668

Gene Structure 6426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGCAACTTATTATACTAATTCAAATAATCAAAAGGACGGTACGCCAATGCTCTATTCAAGGGAACCTTTAACTAGTTCATATCCAGAAACACCTGTTCTTCCTGGTAACATGATGATGTATATGAACTCGGGGTCATACTCGGATGCATTAGCTGGGAGTTCTCAGCAGCAAAACAACTGCATTGAAGTCATTTCCTCAGTGGGGGCTTCGGATTCCAATACACAACAGCAGGATGTCTTATCACATCTTGGTGGCTCACGTATTGGAGAGCAAGGATTCAATGCATGGAGAGATAGTAGAAATGAGATGCTAGTTACGAATCCGATGGATGGTTCTGCAGCTATTCTTCATGGTGGACAGAACTTGCAAGGCCAGGGATTGTCCCTCAGCCTCTCATCAGGAATGCAAGTGCCTTCTATGTCATACCGGAATCCCAATATGGGTTTTGCTTCATTCTTAAGCCCTAATCCATCACTGTCAAGTGAGGGCAGGAATGGCACTTTCAGAGATGACCAGCCAAGAAATGTCGAATATTTGCAACCTAGTTTTCTTGGAGGCAATGCGGATTCAAGTAAAGGGGATTTGTCTCCATATGGGATGTCGAGTATTGCAAGGAACGTTCCCAATTCCAAGTATCTGAAAGCAGCACAACAACTGCTCGATGAAGTTGTCAACGTCCAGAAAGCACTGAAGCAGCATGACAGGGAGAAGAACGAAAGCACAAATGAGCATATGATGAAGAGTTTCAAGGAGGGTGATGATGGTTCAAAGAATGAGCTTGAAAGTGGAGAATCTTCAAACCCCCAAGAGTCCGCCAGTAATTCATCGTGTGAGCTTTCACATGCTGAGAAACAAGAGTTGCAAAACAAGCTGACTAAGCTTCTGTCTATGTTAGATGAGGTTGATAGAAGGTACAAACACTATTATCAGCAGATGCAGATTGTGGTATCATCATTTGATGCGATAGCAGGAAGTGGGGCAGCTAAACCATACACAGCAGTTGCTCTTCAAACTATTTCTCGCCACTTTCGATGCTTACGTGATGCAATCACAGGCCAGATACGAGCAACCCAAAAAAGCCTTGGGGAGCAAGGTACTTCAGGAAGCATTAAAGGGGTTGGAATTACTCGCCTCCGTTACGTGGATCAGCAGCTCAGGCAGCAGAGAGCCCTTCAGCAGCTTGGTATGATGCAACAACATGCATGGAGGCCACAAAGAGGTCTGCCAGAAAGTTCTGTTTCGATTCTGCGAGCATGGCTGTTTGAGCATTTCCTTCATCCCTATCCCAAGGATTCTGATAAGATCATGCTAGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCAAACTGGTTTATAAATGCACGGGTGCGTCTCTGGAAACCCATGGTTGAGGAGATGTACAAAGAAGAGGCTGGTGATGCTGAAATGGACTCTAATTCTTCATCTGAAAATGCACCCCAAACCAAAAAGGGTGAGAAGAGGACCTTGGAAGACGGAGGGGAAGATATGCAGCCTAGTGCAAGTTCCACAGGCACTGATAGATGCAGCACGGGACAATTTATGGACTCCAAACCTGATCATTATGATGTGGAAATGGCTGGATCCACTGGGTCTGCCAGCTTCCAAAATGGAACTCGTCGTGAAGCTGAAGCTGAATTTGGGCTAGTGAAGCTTAGGCAGGGAGAAAGAACTGGCATGGATGAAAGTAGTTTCTTTACTGATGGAATGGTTCAGTCTGATAGGAGCAGCGAAAGGTTTATGGCTGCATACCACATGCCGGAGTTGGGGAGGTTTGGAAGTGGAAGCGGCGTGTCTCTAACATTGGGGTTGCAGCATTGTGATGGTGGTAACATTCCTATCTCTAGTGGGACTCCTCACAGTTTTGTTGCCATGAGAGATGATGATTTGTACAACGCAGCAGCGTCTTCCGTTGGGTCAGAGACCGCAGATTTCGACCAGCAGCACAGATTTGGTTCCTCCCATCTATTACGCGATTTCGTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

670

Amino Acids

73.75

Weight (kDa)

5.6

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	208 - 352	6.2e-51	Associated with HOX
Homeobox_KN	PF05920	420 - 459	3.2e-19	Homeobox KN domain
Homeodomain	PF00046	427 - 459	1.9e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1361
AccII	CGCG	1 cut(s)	1998
AciI	CCGC	4 cut(s)	566, 816, 1812, 1950
AclI	AACGTT	1 cut(s)	621
AclWI	GGATC	3 cut(s)	1155, 1602, 1615
AcsI	RAATTY	1 cut(s)	1661
AcuI	CTGAAG	4 cut(s)	713, 1086, 1160, 1674
AfaI	GTAC	5 cut(s)	43, 917, 1099, 1406, 1916
AfiI	CCNNNNNNNGG	7 cut(s)	204, 332, 443, 1144, 1220, 1783, 1790
AflII	CTTAAG	1 cut(s)	460
AhdI	GACNNNNNGTC	1 cut(s)	1338
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	103, 375
AjuI	GAANNNNNNNTTGG	6 cut(s)	40, 72, 1475, 1507, 1647, 1679
Alw26I	GTCTC	5 cut(s)	594, 1351, 1382, 1824, 1940
AlwI	GGATC	3 cut(s)	1155, 1602, 1615
AlwNI	CAGNNNCTG	1 cut(s)	1541
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	3 cut(s)	373, 1057, 1211
ApoI	RAATTY	1 cut(s)	1661
Asp700I	GAANNNNTTC	1 cut(s)	746
AspS9I	GGNCC	1 cut(s)	1488
AsuHPI	GGTGA	3 cut(s)	770, 1433, 1490
AsuNHI	GCTAGC	1 cut(s)	1312
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	1488
BamHI	GGATCC	1 cut(s)	1607
BanII	GRGCYC	1 cut(s)	1174
BbsI	GAAGAC	2 cut(s)	1503, 1923
BbvCI	CCTCAGC	1 cut(s)	389
BccI	CCATC	7 cut(s)	322, 326, 481, 758, 1721, 1841, 1995
BciT130I	CCWGG	2 cut(s)	105, 377
BclI	TGATCA	1 cut(s)	1582
BcoDI	GTCTC	5 cut(s)	594, 1351, 1382, 1824, 1940
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	8 cut(s)	75, 314, 546, 1313, 1335, 1521, 1670, 1869
BfmI	CTRYAG	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	460
Bme1390I	CCNGG	2 cut(s)	105, 377
Bme18I	GGWCC	1 cut(s)	1488
BmeRI	GACNNNNNGTC	1 cut(s)	1338
BmeT110I	CYCGRG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	1488
BmiI	GGNNCC	3 cut(s)	66, 1609, 1981
BmrFI	CCNGG	2 cut(s)	105, 377
BmrI	ACTGGG	1 cut(s)	1623
BmsI	GCATC	9 cut(s)	136, 300, 927, 952, 1025, 1036, 1182, 1414, 1538
BmtI	GCTAGC	1 cut(s)	1316
BmuI	ACTGGG	1 cut(s)	1623
BpiI	GAAGAC	2 cut(s)	1503, 1923
Bpu10I	CCTNAGC	3 cut(s)	389, 1157, 1679
BsaAI	YACGTR	3 cut(s)	263, 1043, 1144
BsaI	GGTCTC	2 cut(s)	1351, 1940
BsaJI	CCNNGG	5 cut(s)	376, 1084, 1290, 1389, 1491
BsaWI	WCCGGW	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	7 cut(s)	204, 332, 443, 1144, 1220, 1783, 1790
Bse1I	ACTGG	4 cut(s)	819, 1358, 1618, 1702
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	105, 377
BseDI	CCNNGG	5 cut(s)	376, 1084, 1290, 1389, 1491
BseGI	GGATG	6 cut(s)	151, 241, 337, 606, 1279, 1711
BseLI	CCNNNNNNNGG	7 cut(s)	204, 332, 443, 1144, 1220, 1783, 1790
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	5 cut(s)	179, 213, 403, 840, 1171
BseNI	ACTGG	4 cut(s)	819, 1358, 1618, 1702
BseRI	GAGGAG	2 cut(s)	1412, 1869
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	1998
BshFI	GGCC	3 cut(s)	375, 1059, 1213
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	430, 1784
BslFI	GGGAC	3 cut(s)	370, 1572, 1888
BslI	CCNNNNNNNGG	7 cut(s)	204, 332, 443, 1144, 1220, 1783, 1790
BsmAI	GTCTC	5 cut(s)	594, 1351, 1382, 1824, 1940
BsmBI	CGTCTC	1 cut(s)	1382
BsmFI	GGGAC	3 cut(s)	370, 1572, 1888
BsmI	GAATGC	1 cut(s)	411
BsnI	GGCC	3 cut(s)	375, 1059, 1213
Bso31I	GGTCTC	2 cut(s)	1351, 1940
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp1407I	TGTACA	2 cut(s)	1404, 1914
Bsp143I	GATC	4 cut(s)	1147, 1305, 1582, 1607
Bsp19I	CCATGG	1 cut(s)	1389
BspACI	CCGC	4 cut(s)	566, 816, 1812, 1950
BspANI	GGCC	3 cut(s)	375, 1059, 1213
BspCNI	CTCAG	5 cut(s)	178, 212, 402, 841, 1170
BspFNI	CGCG	1 cut(s)	1998
BspLI	GGNNCC	3 cut(s)	66, 1609, 1981
BspMAI	CTGCAG	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	1316
BspPI	GGATC	3 cut(s)	1155, 1602, 1615
BspQI	GCTCTTC	1 cut(s)	1014
BspTI	CTTAAG	1 cut(s)	460
BspTNI	GGTCTC	2 cut(s)	1351, 1940
BsrDI	GCAATG	1 cut(s)	568
BsrGI	TGTACA	2 cut(s)	1404, 1914
BsrI	ACTGG	4 cut(s)	819, 1358, 1618, 1702
BssECI	CCNNGG	5 cut(s)	376, 1084, 1290, 1389, 1491
BssMI	GATC	4 cut(s)	1147, 1305, 1582, 1607
BssT1I	CCWWGG	4 cut(s)	1084, 1290, 1389, 1491
Bst2UI	CCWGG	2 cut(s)	105, 377
Bst4CI	ACNGT	3 cut(s)	41, 480, 1886
Bst6I	CTCTTC	4 cut(s)	737, 1014, 1407, 1478
BstAFI	CTTAAG	1 cut(s)	460
BstAUI	TGTACA	2 cut(s)	1404, 1914
BstBAI	YACGTR	3 cut(s)	263, 1043, 1144
BstC8I	GCNNGC	3 cut(s)	1254, 1314, 1624
BstDEI	CTNAG	7 cut(s)	165, 199, 389, 849, 879, 1157, 1679
BstDSI	CCRYGG	1 cut(s)	1389
BstF5I	GGATG	6 cut(s)	151, 241, 337, 606, 1279, 1711
BstFNI	CGCG	1 cut(s)	1998
BstKTI	GATC	4 cut(s)	1150, 1308, 1585, 1610
BstMAI	GTCTC	5 cut(s)	594, 1351, 1382, 1824, 1940
BstMBI	GATC	4 cut(s)	1147, 1305, 1582, 1607
BstNI	CCWGG	2 cut(s)	105, 377
BstNSI	RCATGY	3 cut(s)	848, 1205, 1783
BstSCI	CCNGG	2 cut(s)	103, 375
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	1998
BstV2I	GAAGAC	2 cut(s)	1503, 1923
BstX2I	RGATCY	1 cut(s)	1607
BstYI	RGATCY	1 cut(s)	1607
BsuRI	GGCC	3 cut(s)	375, 1059, 1213
BtgI	CCRYGG	1 cut(s)	1389
BtsCI	GGATG	6 cut(s)	151, 241, 337, 606, 1279, 1711
BtsIMutI	CAGTG	5 cut(s)	207, 476, 689, 1539, 1611
Cac8I	GCNNGC	3 cut(s)	1254, 1314, 1624
CaiI	CAGNNNCTG	1 cut(s)	1541
Cfr13I	GGNCC	1 cut(s)	1488
CseI	GACGC	2 cut(s)	1364, 1917
Csp6I	GTAC	5 cut(s)	42, 916, 1098, 1405, 1915
CviQI	GTAC	5 cut(s)	42, 916, 1098, 1405, 1915
DdeI	CTNAG	7 cut(s)	165, 199, 389, 849, 879, 1157, 1679
DpnI	GATC	4 cut(s)	1149, 1307, 1584, 1609
DpnII	GATC	4 cut(s)	1147, 1305, 1582, 1607
DriI	GACNNNNNGTC	1 cut(s)	1338
Eam1104I	CTCTTC	4 cut(s)	737, 1014, 1407, 1478
Eam1105I	GACNNNNNGTC	1 cut(s)	1338
EarI	CTCTTC	4 cut(s)	737, 1014, 1407, 1478
EciI	GGCGGA	1 cut(s)	805
Eco130I	CCWWGG	4 cut(s)	1084, 1290, 1389, 1491
Eco24I	GRGCYC	1 cut(s)	1174
Eco31I	GGTCTC	2 cut(s)	1351, 1940
Eco47I	GGWCC	1 cut(s)	1488
Eco57I	CTGAAG	4 cut(s)	713, 1086, 1160, 1674
Eco88I	CYCGRG	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	1488
EcoRII	CCWGG	2 cut(s)	103, 375
EcoT14I	CCWWGG	4 cut(s)	1084, 1290, 1389, 1491
EcoT22I	ATGCAT	3 cut(s)	151, 289, 1207
EcoT38I	GRGCYC	1 cut(s)	1174
ErhI	CCWWGG	4 cut(s)	1084, 1290, 1389, 1491
Esp3I	CGTCTC	1 cut(s)	1382
FalI	AAGNNNNNCTT	4 cut(s)	52, 84, 1475, 1507
FaqI	GGGAC	3 cut(s)	370, 1572, 1888
FauNDI	CATATG	2 cut(s)	595, 735
FbaI	TGATCA	1 cut(s)	1582
FokI	GGATG	6 cut(s)	158, 248, 344, 613, 1266, 1718
FriOI	GRGCYC	1 cut(s)	1174
FspBI	CTAG	8 cut(s)	75, 314, 546, 1313, 1335, 1521, 1670, 1869
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	375, 1059, 1213
HapII	CCGG	2 cut(s)	430, 1784
HgaI	GACGC	2 cut(s)	1364, 1917
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	2 cut(s)	881, 1676
HpaII	CCGG	2 cut(s)	430, 1784
HphI	GGTGA	3 cut(s)	770, 1433, 1490
Hpy166II	GTNNAC	2 cut(s)	359, 676
Hpy188I	TCNGA	9 cut(s)	145, 214, 327, 509, 642, 1300, 1453, 1744, 1945
Hpy188III	TCNNGA	6 cut(s)	86, 402, 682, 1104, 1381, 1646
Hpy8I	GTNNAC	2 cut(s)	359, 676
Hpy99I	CGWCG	1 cut(s)	1647
HpyAV	CCTTC	4 cut(s)	426, 906, 1184, 1286
HpyCH4III	ACNGT	3 cut(s)	41, 480, 1886
HpyCH4IV	ACGT	5 cut(s)	262, 621, 678, 1042, 1143
HpyF3I	CTNAG	7 cut(s)	165, 199, 389, 849, 879, 1157, 1679
HpySE526I	ACGT	5 cut(s)	262, 621, 678, 1042, 1143
Ksp22I	TGATCA	1 cut(s)	1582
Kzo9I	GATC	4 cut(s)	1147, 1305, 1582, 1607
LguI	GCTCTTC	1 cut(s)	1014
LmnI	GCTCC	2 cut(s)	1090, 1749
LweI	GCATC	9 cut(s)	136, 300, 927, 952, 1025, 1036, 1182, 1414, 1538
MaeI	CTAG	8 cut(s)	75, 314, 546, 1313, 1335, 1521, 1670, 1869
MaeII	ACGT	5 cut(s)	262, 621, 678, 1042, 1143
MaeIII	GTNAC	4 cut(s)	107, 316, 1139, 1853
MalI	GATC	4 cut(s)	1149, 1307, 1584, 1609
MboI	GATC	4 cut(s)	1147, 1305, 1582, 1607
MflI	RGATCY	1 cut(s)	1607
MhlI	GDGCHC	1 cut(s)	1174
MluCI	AATT	7 cut(s)	19, 628, 823, 1125, 1441, 1562, 1661
MlyI	GAGTC	4 cut(s)	821, 1430, 1565, 1870
MmeI	TCCRAC	1 cut(s)	1102
Mph1103I	ATGCAT	3 cut(s)	151, 289, 1207
MroXI	GAANNNNTTC	1 cut(s)	746
MseI	TTAA	3 cut(s)	71, 461, 1113
MslI	CAYNNNNRTG	4 cut(s)	116, 252, 1590, 1845
MspCI	CTTAAG	1 cut(s)	460
MspI	CCGG	2 cut(s)	430, 1784
MspR9I	CCNGG	2 cut(s)	105, 377
Mva1269I	GAATGC	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	105, 377
MvnI	CGCG	1 cut(s)	1998
NcoI	CCATGG	1 cut(s)	1389
NdeI	CATATG	2 cut(s)	595, 735
NdeII	GATC	4 cut(s)	1147, 1305, 1582, 1607
NheI	GCTAGC	1 cut(s)	1312
NlaIV	GGNNCC	3 cut(s)	66, 1609, 1981
NsiI	ATGCAT	3 cut(s)	151, 289, 1207
NspI	RCATGY	3 cut(s)	848, 1205, 1783
PciSI	GCTCTTC	1 cut(s)	1014
PcsI	WCGNNNNNNNCGW	2 cut(s)	1030, 1039
PctI	GAATGC	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	8 cut(s)	215, 279, 322, 433, 569, 794, 1246, 1295
PleI	GAGTC	4 cut(s)	820, 1430, 1565, 1870
PpsI	GAGTC	4 cut(s)	820, 1430, 1565, 1870
Ppu21I	YACGTR	3 cut(s)	263, 1043, 1144
PpuMI	RGGWCCY	1 cut(s)	1488
PsiI	TTATAA	1 cut(s)	1361
Psp1406I	AACGTT	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	1488
Psp6I	CCWGG	2 cut(s)	103, 375
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	103, 375
PspN4I	GGNNCC	3 cut(s)	66, 1609, 1981
PspPI	GGNCC	1 cut(s)	1488
PspPPI	RGGWCCY	1 cut(s)	1488
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	1541
PsuI	RGATCY	1 cut(s)	1607
RsaI	GTAC	5 cut(s)	43, 917, 1099, 1406, 1916
RsaNI	GTAC	5 cut(s)	42, 916, 1098, 1405, 1915
RseI	CAYNNNNRTG	4 cut(s)	116, 252, 1590, 1845
SapI	GCTCTTC	1 cut(s)	1014
SaqAI	TTAA	3 cut(s)	71, 461, 1113
Sau3AI	GATC	4 cut(s)	1147, 1305, 1582, 1607
Sau96I	GGNCC	1 cut(s)	1488
SchI	GAGTC	4 cut(s)	821, 1430, 1565, 1870
ScrFI	CCNGG	2 cut(s)	105, 377
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	9 cut(s)	136, 300, 927, 952, 1025, 1036, 1182, 1414, 1538
SfcI	CTRYAG	1 cut(s)	339
SinI	GGWCC	1 cut(s)	1488
SmiMI	CAYNNNNRTG	4 cut(s)	116, 252, 1590, 1845
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
SpeI	ACTAGT	1 cut(s)	74
Sse9I	AATT	7 cut(s)	19, 628, 823, 1125, 1441, 1562, 1661
SsiI	CCGC	4 cut(s)	566, 816, 1812, 1950
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	8 cut(s)	75, 314, 546, 1313, 1335, 1521, 1670, 1869
StyD4I	CCNGG	2 cut(s)	103, 375
StyI	CCWWGG	4 cut(s)	1084, 1290, 1389, 1491
TaaI	ACNGT	3 cut(s)	41, 480, 1886
TaiI	ACGT	5 cut(s)	265, 624, 681, 1045, 1146
TaqI	TCGA	6 cut(s)	531, 605, 663, 1033, 1244, 1959
TasI	AATT	7 cut(s)	19, 628, 823, 1125, 1441, 1562, 1661
TatI	WGTACW	2 cut(s)	1404, 1914
TauI	GCSGC	1 cut(s)	1815
TfiI	GAWTC	8 cut(s)	215, 279, 322, 433, 569, 794, 1246, 1295
Tru1I	TTAA	3 cut(s)	71, 461, 1113
Tru9I	TTAA	3 cut(s)	71, 461, 1113
TscAI	CASTG	5 cut(s)	207, 483, 696, 1546, 1618
TspGWI	ACGGA	3 cut(s)	1127, 1515, 1924
TspRI	CASTG	5 cut(s)	207, 483, 696, 1546, 1618
Vha464I	CTTAAG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	1488
XapI	RAATTY	1 cut(s)	1661
XceI	RCATGY	3 cut(s)	848, 1205, 1783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1082
XmnI	GAANNNNTTC	1 cut(s)	746
XspI	CTAG	8 cut(s)	75, 314, 546, 1313, 1335, 1521, 1670, 1869
Zsp2I	ATGCAT	3 cut(s)	151, 289, 1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.