pycom05g05110

BEL1-like homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005992
Physical Location & Seq
Forward (+)
6100619 .. 6101401
783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g05110.1

Sequence Viewer

Length: 783 bp
ATGTCAGCTTACTATGCTGGTTCGAATACTCAAAAAGATGCTACGCCAATGCTCTATTTAAGGGAACCACCTTTGCCTAGTTCTTATCCAGAAGCACCTCTTCTTACTGGTAACATGATGATGTATATGAACTCTGGGTCATACTCGGATGCAGTAGCTGGGAGTTCTCAGCAGCAAAACAACTGCATTGAAGTAATCTCCTCAGTGGAGGGTTCAGATTCCAACCAGCAGCAGCAAAATGTCCTATCACATCTTGGTGGAACGCGTATTGGAGAGCAGGGATTCAGTCCATGGAGGGAGGGTAGAAATGAGATGCTAGTTACGCACCCCATGGGTAGTTCTTCAGGTATTCTTCATGGTGGACAGAACTTGCAAGGTCAGGGGTTGTCCCTCAGCCTCAGTACACAAATCCCATCAGGAATGCAAATGCCTTCTATCTCATACCGGAATCCCAATATGGGTTTTGCTTCATTCTTAAGTCCTAACCCATCCGTTTCCAGTGAGGTTGACGGCAGGAATGGCTCTTTTAGAGATGAGCAGCCAAGAAATGTTGAATATTTGCCATCTGGTTTTCCGGGAGGCAATCCAGATTCAAGTAAAGGGGATTTGTCTCCATATGGGATGTCAAGTATTGCAAGAACCATTCCCCATAACAAATACCTCAAAGCAGCACAACAACTGCTTGATGAAGTCGTCAATGTCCAGAAAGCACTTAAGCAACATGATAGAGAGAAGAACCAAAGCACACACGATCGATCAGAAGAGTTTCAAGGAGGGAGATGA

Protein Analysis

261

Amino Acids

28.24

Weight (kDa)

5.67

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 216 - 256 8.2e-06 Associated with HOX
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 1 cut(s) 458
AflII CTTAAG 2 cut(s) 475, 713
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 4 cut(s) 191, 554, 594, 770
AluBI AGCT 2 cut(s) 8, 158
AluI AGCT 2 cut(s) 8, 158
Alw26I GTCTC 1 cut(s) 615
AlwNI CAGNNNCTG 1 cut(s) 158
ApeKI GCWGC 5 cut(s) 172, 229, 232, 538, 668
Asp700I GAANNNNTTC 1 cut(s) 765
AsuC2I CCSGG 1 cut(s) 576
AsuII TTCGAA 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 392
BbvI GCAGC 5 cut(s) 184, 241, 244, 550, 680
BccI CCATC 3 cut(s) 421, 496, 571
BceAI ACGGC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 2 cut(s) 78, 317
BfrI CTTAAG 2 cut(s) 475, 713
BisI GCNGC 5 cut(s) 173, 230, 233, 539, 669
BlsI GCNGC 5 cut(s) 174, 231, 234, 540, 670
Bme1390I CCNGG 1 cut(s) 576
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 576
BmsI GCATC 3 cut(s) 28, 139, 303
Bpu10I CCTNAGC 1 cut(s) 392
Bpu14I TTCGAA 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 576
Bsa29I ATCGAT 1 cut(s) 754
BsaJI CCNNGG 2 cut(s) 290, 330
BsaWI WCCGGW 1 cut(s) 444
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 2 cut(s) 112, 498
BseCI ATCGAT 1 cut(s) 754
BseDI CCNNGG 2 cut(s) 290, 330
BseGI GGATG 3 cut(s) 154, 488, 627
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 4 cut(s) 182, 216, 406, 412
BseNI ACTGG 2 cut(s) 112, 498
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 5 cut(s) 184, 241, 244, 550, 680
BseYI CCCAGC 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 754
BshVI ATCGAT 1 cut(s) 754
BsiEI CGRYCG 1 cut(s) 754
BsiSI CCGG 2 cut(s) 445, 575
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 426
Bsp119I TTCGAA 1 cut(s) 23
Bsp143I GATC 2 cut(s) 751, 755
Bsp19I CCATGG 2 cut(s) 290, 330
BspCNI CTCAG 4 cut(s) 181, 215, 405, 411
BspDI ATCGAT 1 cut(s) 754
BspFNI CGCG 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 23
BspTI CTTAAG 2 cut(s) 475, 713
BsrI ACTGG 2 cut(s) 112, 498
BssECI CCNNGG 2 cut(s) 290, 330
BssMI GATC 2 cut(s) 751, 755
BssT1I CCWWGG 2 cut(s) 290, 330
Bst6I CTCTTC 2 cut(s) 105, 756
BstAFI CTTAAG 2 cut(s) 475, 713
BstBI TTCGAA 1 cut(s) 23
BstDEI CTNAG 4 cut(s) 168, 202, 392, 398
BstDSI CCRYGG 2 cut(s) 290, 330
BstF5I GGATG 3 cut(s) 154, 488, 627
BstFNI CGCG 1 cut(s) 265
BstKTI GATC 2 cut(s) 754, 758
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 2 cut(s) 751, 755
BstMCI CGRYCG 1 cut(s) 754
BstMWI GCNNNNNNNGC 3 cut(s) 14, 322, 519
BstSCI CCNGG 1 cut(s) 574
BstUI CGCG 1 cut(s) 265
BstV1I GCAGC 5 cut(s) 184, 241, 244, 550, 680
Bsu15I ATCGAT 1 cut(s) 754
BsuTUI ATCGAT 1 cut(s) 754
BtgI CCRYGG 2 cut(s) 290, 330
BtsCI GGATG 3 cut(s) 154, 488, 627
BtsIMutI CAGTG 2 cut(s) 210, 505
CaiI CAGNNNCTG 1 cut(s) 158
ClaI ATCGAT 1 cut(s) 754
Csp6I GTAC 1 cut(s) 402
CviAII CATG 5 cut(s) 115, 291, 331, 356, 722
CviJI RGCY 5 cut(s) 8, 158, 396, 522, 541
CviKI_1 RGCY 5 cut(s) 8, 158, 396, 522, 541
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 4 cut(s) 168, 202, 392, 398
DpnI GATC 2 cut(s) 753, 757
DpnII GATC 2 cut(s) 751, 755
Eam1104I CTCTTC 2 cut(s) 105, 756
EarI CTCTTC 2 cut(s) 105, 756
Eco130I CCWWGG 2 cut(s) 290, 330
Eco57I CTGAAG 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 290, 330
ErhI CCWWGG 2 cut(s) 290, 330
FaeI CATG 5 cut(s) 118, 294, 334, 359, 725
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 373
FatI CATG 5 cut(s) 114, 290, 330, 355, 721
FauNDI CATATG 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 173, 230, 233, 539, 669
FokI GGATG 3 cut(s) 161, 475, 634
Fsp4HI GCNGC 5 cut(s) 173, 230, 233, 539, 669
FspBI CTAG 2 cut(s) 78, 317
GluI GCNGC 5 cut(s) 173, 230, 233, 539, 669
GsaI CCCAGC 1 cut(s) 162
HapII CCGG 2 cut(s) 445, 575
Hin1II CATG 5 cut(s) 118, 294, 334, 359, 725
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 4 cut(s) 218, 282, 448, 590
HpaII CCGG 2 cut(s) 445, 575
Hpy166II GTNNAC 3 cut(s) 362, 404, 508
Hpy188I TCNGA 3 cut(s) 148, 217, 760
Hpy188III TCNNGA 4 cut(s) 89, 417, 587, 703
Hpy8I GTNNAC 3 cut(s) 362, 404, 508
HpyAV CCTTC 1 cut(s) 441
HpyCH4V TGCA 5 cut(s) 152, 186, 373, 424, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 322, 519
HpyF3I CTNAG 4 cut(s) 168, 202, 392, 398
Hsp92II CATG 5 cut(s) 118, 294, 334, 359, 725
Kzo9I GATC 2 cut(s) 751, 755
Lsp1109I GCAGC 5 cut(s) 184, 241, 244, 550, 680
LweI GCATC 3 cut(s) 28, 139, 303
MaeI CTAG 2 cut(s) 78, 317
MaeIII GTNAC 2 cut(s) 110, 319
MalI GATC 2 cut(s) 753, 757
MboI GATC 2 cut(s) 751, 755
MboII GAAGA 5 cut(s) 92, 333, 344, 745, 773
MluI ACGCGT 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 246
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 3 cut(s) 59, 476, 714
MslI CAYNNNNRTG 2 cut(s) 119, 255
MspCI CTTAAG 2 cut(s) 475, 713
MspI CCGG 2 cut(s) 445, 575
MspR9I CCNGG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 426
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 3 cut(s) 14, 322, 519
NciI CCSGG 1 cut(s) 576
NcoI CCATGG 2 cut(s) 290, 330
NdeI CATATG 1 cut(s) 616
NdeII GATC 2 cut(s) 751, 755
NlaIII CATG 5 cut(s) 118, 294, 334, 359, 725
NlaIV GGNNCC 1 cut(s) 66
NspV TTCGAA 1 cut(s) 23
PctI GAATGC 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 4 cut(s) 218, 282, 448, 590
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 5 cut(s) 174, 231, 234, 540, 670
Ple19I CGATCG 1 cut(s) 754
PspFI CCCAGC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 66
PstNI CAGNNNCTG 1 cut(s) 158
PvuI CGATCG 1 cut(s) 754
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 2 cut(s) 119, 255
SaqAI TTAA 3 cut(s) 59, 476, 714
SatI GCNGC 5 cut(s) 173, 230, 233, 539, 669
Sau3AI GATC 2 cut(s) 751, 755
ScrFI CCNGG 1 cut(s) 576
SetI ASST 8 cut(s) 10, 73, 100, 160, 349, 379, 507, 663
SfaNI GCATC 3 cut(s) 28, 139, 303
SfuI TTCGAA 1 cut(s) 23
SmiMI CAYNNNNRTG 2 cut(s) 119, 255
SmlI CTYRAG 2 cut(s) 475, 713
SmoI CTYRAG 2 cut(s) 475, 713
SspI AATATT 1 cut(s) 557
SspMI CTAG 2 cut(s) 78, 317
StyD4I CCNGG 1 cut(s) 574
StyI CCWWGG 2 cut(s) 290, 330
TaqI TCGA 2 cut(s) 23, 754
TatI WGTACW 1 cut(s) 401
TfiI GAWTC 4 cut(s) 218, 282, 448, 590
Tru1I TTAA 3 cut(s) 59, 476, 714
Tru9I TTAA 3 cut(s) 59, 476, 714
TscAI CASTG 2 cut(s) 210, 505
TseI GCWGC 5 cut(s) 172, 229, 232, 538, 668
TspDTI ATGAA 4 cut(s) 143, 344, 459, 702
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 2 cut(s) 210, 505
Vha464I CTTAAG 2 cut(s) 475, 713
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 2 cut(s) 78, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.