Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443717.1

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 786

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443717.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

gtctcaaactggtttataaatgcacgggtgcgtctctggaaacccatggttgaggagatgtacaaagaagaggctggtgatgctgaaatggactctaattcttcatctgaaaatgcaccccaaaccaaaaaaggtgagaagaggaccttggaagacggaggggaagatatgcagcctagtgcaagttccactggcactgatagatgcagcacgggacaatttatggactccaaacctgatcattatgatgtggaaatggctggatccactgggtctgccagcttccaaaatgggactcgtcgtgaagctgaagctgaatttgggctagtgaagcttaggcagggagaaaggcctggcatggatgaaagtagtttctttactgatggaatggttcagtctgataggagcagcgaaaggtttatggctgcataccacatgcgggagttggggaggtttggaagtggaagcggcgtgtctctaacattggggttgcagcattgtgatggtggtaacattcctatctctagtgggactcctcacagttttgttgccatgagagatgatgatttgtacaatgcagcagcgtcttccgttgggtcagagaccgcagatttcgaccagcagcacagatttggttcctcccatctattacgcgatttcgtagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

222

Amino Acids

24.31

Weight (kDa)

4.8

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AccII	CGCG	1 cut(s)	654
AciI	CCGC	3 cut(s)	439, 468, 606
AclWI	GGATC	2 cut(s)	258, 271
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	62, 572
AfiI	CCNNNNNNNGG	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	4 cut(s)	131, 163, 303, 335
AluBI	AGCT	4 cut(s)	282, 308, 314, 334
AluI	AGCT	4 cut(s)	282, 308, 314, 334
Alw26I	GTCTC	4 cut(s)	7, 38, 480, 596
AlwI	GGATC	2 cut(s)	258, 271
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	8 cut(s)	172, 207, 408, 425, 493, 578, 581, 622
ApoI	RAATTY	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	89, 146
AvaII	GGWCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	159, 579
BbvI	GCAGC	8 cut(s)	184, 219, 412, 420, 505, 590, 593, 634
BccI	CCATC	3 cut(s)	377, 497, 651
BciT130I	CCWGG	1 cut(s)	354
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	4 cut(s)	7, 38, 480, 596
BfaI	CTAG	3 cut(s)	177, 326, 525
BisI	GCNGC	9 cut(s)	173, 208, 409, 426, 469, 494, 579, 582, 623
BlsI	GCNGC	9 cut(s)	174, 209, 410, 427, 470, 495, 580, 583, 624
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	265, 637
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	70, 194
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	159, 579
Bpu10I	CCTNAGC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	45, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	3 cut(s)	14, 196, 274
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	45, 147
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseNI	ACTGG	3 cut(s)	14, 196, 274
BseRI	GAGGAG	2 cut(s)	68, 525
BseXI	GCAGC	8 cut(s)	184, 219, 412, 420, 505, 590, 593, 634
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	1 cut(s)	352
BslFI	GGGAC	3 cut(s)	228, 307, 544
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	4 cut(s)	7, 38, 480, 596
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	3 cut(s)	228, 307, 544
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	596
Bsp1407I	TGTACA	2 cut(s)	60, 570
Bsp143I	GATC	2 cut(s)	238, 263
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	439, 468, 606
BspANI	GGCC	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	654
BspLI	GGNNCC	2 cut(s)	265, 637
BspPI	GGATC	2 cut(s)	258, 271
BspTNI	GGTCTC	1 cut(s)	596
BsrGI	TGTACA	2 cut(s)	60, 570
BsrI	ACTGG	3 cut(s)	14, 196, 274
BssECI	CCNNGG	2 cut(s)	45, 147
BssMI	GATC	2 cut(s)	238, 263
BssT1I	CCWWGG	2 cut(s)	45, 147
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	2 cut(s)	63, 134
BstAUI	TGTACA	2 cut(s)	60, 570
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	654
BstKTI	GATC	2 cut(s)	241, 266
BstMAI	GTCTC	4 cut(s)	7, 38, 480, 596
BstMBI	GATC	2 cut(s)	238, 263
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 331
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	8 cut(s)	184, 219, 412, 420, 505, 590, 593, 634
BstV2I	GAAGAC	2 cut(s)	159, 579
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	3 cut(s)	189, 195, 267
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	2 cut(s)	20, 573
Csp6I	GTAC	2 cut(s)	61, 571
CviAII	CATG	4 cut(s)	46, 358, 436, 553
CviQI	GTAC	2 cut(s)	61, 571
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	2 cut(s)	240, 265
DpnII	GATC	2 cut(s)	238, 263
Eam1104I	CTCTTC	2 cut(s)	63, 134
EarI	CTCTTC	2 cut(s)	63, 134
Eco130I	CCWWGG	2 cut(s)	45, 147
Eco147I	AGGCCT	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	596
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	45, 147
ErhI	CCWWGG	2 cut(s)	45, 147
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	4 cut(s)	49, 361, 439, 556
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	3 cut(s)	228, 307, 544
FatI	CATG	4 cut(s)	45, 357, 435, 552
FauI	CCCGC	1 cut(s)	432
FbaI	TGATCA	1 cut(s)	238
Fnu4HI	GCNGC	9 cut(s)	173, 208, 409, 426, 469, 494, 579, 582, 623
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	9 cut(s)	173, 208, 409, 426, 469, 494, 579, 582, 623
FspBI	CTAG	3 cut(s)	177, 326, 525
GluI	GCNGC	9 cut(s)	173, 208, 409, 426, 469, 494, 579, 582, 623
HaeIII	GGCC	1 cut(s)	352
HgaI	GACGC	2 cut(s)	20, 573
Hin1II	CATG	4 cut(s)	49, 361, 439, 556
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	4 cut(s)	92, 227, 295, 532
HphI	GGTGA	2 cut(s)	89, 146
Hpy188I	TCNGA	3 cut(s)	109, 400, 601
Hpy188III	TCNNGA	2 cut(s)	37, 302
Hpy99I	CGWCG	1 cut(s)	303
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	8 cut(s)	23, 116, 172, 182, 207, 428, 493, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 331
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	49, 361, 439, 556
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	238, 263
LmnI	GCTCC	1 cut(s)	405
Lsp1109I	GCAGC	8 cut(s)	184, 219, 412, 420, 505, 590, 593, 634
LweI	GCATC	2 cut(s)	70, 194
MaeI	CTAG	3 cut(s)	177, 326, 525
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	2 cut(s)	240, 265
MboI	GATC	2 cut(s)	238, 263
MboII	GAAGA	6 cut(s)	80, 93, 151, 164, 176, 579
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	3 cut(s)	97, 218, 317
MlyI	GAGTC	4 cut(s)	86, 221, 289, 526
MnlI	CCTC	7 cut(s)	46, 64, 135, 152, 444, 546, 649
MslI	CAYNNNNRTG	2 cut(s)	246, 501
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	2 cut(s)	80, 331
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	238, 263
NlaIII	CATG	4 cut(s)	49, 361, 439, 556
NlaIV	GGNNCC	2 cut(s)	265, 637
NspI	RCATGY	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	352
PkrI	GCNGC	9 cut(s)	174, 209, 410, 427, 470, 495, 580, 583, 624
PleI	GAGTC	4 cut(s)	86, 221, 289, 526
PpsI	GAGTC	4 cut(s)	86, 221, 289, 526
PpuMI	RGGWCCY	1 cut(s)	144
PsiI	TTATAA	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	265, 637
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	2 cut(s)	62, 572
RsaNI	GTAC	2 cut(s)	61, 571
RseI	CAYNNNNRTG	2 cut(s)	246, 501
SatI	GCNGC	9 cut(s)	173, 208, 409, 426, 469, 494, 579, 582, 623
Sau3AI	GATC	2 cut(s)	238, 263
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	4 cut(s)	86, 221, 289, 526
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	9 cut(s)	136, 149, 238, 284, 310, 316, 336, 419, 455
SfaNI	GCATC	2 cut(s)	70, 194
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	246, 501
Sse9I	AATT	3 cut(s)	97, 218, 317
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	3 cut(s)	439, 468, 606
SspMI	CTAG	3 cut(s)	177, 326, 525
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	2 cut(s)	45, 147
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	615
TasI	AATT	3 cut(s)	97, 218, 317
TatI	WGTACW	2 cut(s)	60, 570
TauI	GCSGC	1 cut(s)	471
TscAI	CASTG	3 cut(s)	196, 202, 274
TseI	GCWGC	8 cut(s)	172, 207, 408, 425, 493, 578, 581, 622
TspDTI	ATGAA	2 cut(s)	93, 378
TspGWI	ACGGA	2 cut(s)	171, 580
TspRI	CASTG	3 cut(s)	196, 202, 274
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	439
XspI	CTAG	3 cut(s)	177, 326, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.