Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Forward (+)

6101529 .. 6104440

Gene Structure 2912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCTAGATGAGGTTGACAGACGGTACAAGCAGTATTATCATCAGATGCAGATTGTTGTATCATCATTTGATGTGATAGCGGGAGGTGGGTCAGCTAAACCGTACACAGCAGTAGCCTTGCAGACTATTTCACGCCACTTTCGGTGCTTACGTGATGCAATCACAGGCCAGATACAAGCAACCCGTAAAAGCCTTGGGGAGCAAGGTGCCTCAGGAAGCATGAAAGGAGTTGGAATATCTCGCCTCCGTTATGTGGACCAGCATCTCAAGCAGCAGAGGGCCCTTCAGCAGCTTGGCATGATGCAACAACATGCATGGAGACCACAAAGAGGTTTGCCGGAAAGCTCTGTCTCAATTCTGCGAGCATGGCTATTTGAGCATTTCCTTCATCCCTATCCCAAGGATTCTGATAAGATCCTGCTAGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTCTCAAACTGGTTTATAAATGCACGAGTGCGTCTCTGGAAGCCCATGGTTGAGGAGATGTACAAAGAAGAGGCTGGTGATGCCGAGATGGATTCCAACTCTTCATCTGAGAACGCACCTCAAACAAAAGAAGGTGACAACACAAGGACCATGGAAGACGGAGTACAAGATATGCAACCTAGTGCAAGTTCGACAGGCACTGAGAGGTGCAGCACTGGACAATTTATGGACTCCAAATCCAACCATTTCCATGACGTGGAAATGGCTGGATCCGCTGGGGCTGCCAGTTTCCAGAATGTGACTCGTCACGAAGCTGAAGCTGAGTACGGGCTTGTGAAGCTTAGAGAGGGGCAAAGGCCTGGTATGGATGACTGTGGTCTCTTTTCTGATGCAAATGTTCAGACTGATAGGAACAATGAGAGGTATATGGCAGCAGCTGCTGCGTACCAGATGCCGGAGCTGGGGAGATTTGGAAGTGGAAGCGGGGTGTCTCTGACATTGGGATTGCAGCATTGTGACGGTGGCGGTAGCCTACCTATCTCTCGTGGGACTCATCACGGTTTTGTTGCCGTGAGAGGGGACGATTTATACAACCCTGCAGCTTCTTCTGTAGGATCTGAGACAGCAGATTTTGAATGCCTTGATTCCGGGAACCAGCAGCAACACAGATTTAGTTCCTCCCATCTATTACGTGATTTCGTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

387

Amino Acids

42.71

Weight (kDa)

6.16

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POX	PF07526	1 - 55	1.4e-28	Associated with HOX
Homeobox_KN	PF05920	123 - 162	8.3e-19	Homeobox KN domain
Homeodomain	PF00046	130 - 162	1.8e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	709
AciI	CCGC	4 cut(s)	80, 726, 936, 978
AclWI	GGATC	4 cut(s)	409, 717, 730, 1075
AcuI	CTGAAG	2 cut(s)	269, 789
AfaI	GTAC	6 cut(s)	26, 104, 515, 618, 779, 899
AfiI	CCNNNNNNNGG	6 cut(s)	253, 329, 709, 907, 914, 1029
AgsI	TTSAA	1 cut(s)	1088
AhdI	GACNNNNNGTC	1 cut(s)	447
AjiI	CACGTC	1 cut(s)	709
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	9 cut(s)	95, 292, 345, 767, 773, 793, 890, 913, 1055
AluI	AGCT	9 cut(s)	95, 292, 345, 767, 773, 793, 890, 913, 1055
Alw26I	GTCTC	7 cut(s)	313, 355, 460, 491, 836, 948, 1067
AlwI	GGATC	4 cut(s)	409, 717, 730, 1075
AlwNI	CAGNNNCTG	3 cut(s)	653, 890, 893
AoxI	GGCC	3 cut(s)	166, 279, 809
ApaI	GGGCCC	1 cut(s)	283
AspS9I	GGNCC	4 cut(s)	256, 279, 280, 600
AsuC2I	CCSGG	1 cut(s)	1102
AsuHPI	GGTGA	2 cut(s)	542, 599
AsuNHI	GCTAGC	1 cut(s)	421
AvaII	GGWCC	2 cut(s)	256, 600
AxyI	CCTNAGG	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	2 cut(s)	600, 632
BauI	CACGAG	2 cut(s)	477, 996
BbsI	GAAGAC	1 cut(s)	615
BccI	CCATC	2 cut(s)	535, 1143
BceAI	ACGGC	1 cut(s)	1007
BciT130I	CCWGG	1 cut(s)	813
BcnI	CCSGG	1 cut(s)	1102
BcoDI	GTCTC	7 cut(s)	313, 355, 460, 491, 836, 948, 1067
BfaI	CTAG	4 cut(s)	5, 422, 444, 633
BfmI	CTRYAG	2 cut(s)	1050, 1062
Bme1390I	CCNGG	2 cut(s)	813, 1102
Bme18I	GGWCC	2 cut(s)	256, 600
BmeRI	GACNNNNNGTC	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	4 cut(s)	256, 279, 280, 600
BmiI	GGNNCC	4 cut(s)	208, 281, 724, 1106
BmrFI	CCNGG	2 cut(s)	813, 1102
BmsI	GCATC	7 cut(s)	36, 145, 271, 291, 523, 832, 894
BmtI	GCTAGC	1 cut(s)	425
BoxI	GACNNNNGTC	1 cut(s)	828
BpiI	GAAGAC	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	1102
BsaAI	YACGTR	2 cut(s)	152, 1145
BsaI	GGTCTC	3 cut(s)	313, 460, 836
BsaJI	CCNNGG	4 cut(s)	193, 399, 498, 603
Bsc4I	CCNNNNNNNGG	6 cut(s)	253, 329, 709, 907, 914, 1029
Bse1I	ACTGG	3 cut(s)	467, 673, 738
Bse21I	CCTNAGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	4 cut(s)	193, 399, 498, 603
BseGI	GGATG	2 cut(s)	388, 826
BseLI	CCNNNNNNNGG	6 cut(s)	253, 329, 709, 907, 914, 1029
BseMII	CTCAG	5 cut(s)	225, 552, 645, 765, 1062
BseNI	ACTGG	3 cut(s)	467, 673, 738
BseRI	GAGGAG	1 cut(s)	521
BseSI	GKGCMC	1 cut(s)	283
BseYI	CCCAGC	2 cut(s)	728, 913
BsgI	GTGCAG	1 cut(s)	682
BshFI	GGCC	3 cut(s)	168, 281, 811
BshNI	GGYRCC	1 cut(s)	206
BsiSI	CCGG	3 cut(s)	338, 908, 1101
BslFI	GGGAC	2 cut(s)	1015, 1046
BslI	CCNNNNNNNGG	6 cut(s)	253, 329, 709, 907, 914, 1029
BsmAI	GTCTC	7 cut(s)	313, 355, 460, 491, 836, 948, 1067
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	1015, 1046
BsmI	GAATGC	1 cut(s)	1094
BsnI	GGCC	3 cut(s)	168, 281, 811
Bso31I	GGTCTC	3 cut(s)	313, 460, 836
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	414, 722, 1067
Bsp19I	CCATGG	2 cut(s)	498, 603
BspACI	CCGC	4 cut(s)	80, 726, 936, 978
BspANI	GGCC	3 cut(s)	168, 281, 811
BspCNI	CTCAG	5 cut(s)	224, 553, 646, 766, 1063
BspLI	GGNNCC	4 cut(s)	208, 281, 724, 1106
BspMAI	CTGCAG	1 cut(s)	1054
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	4 cut(s)	409, 717, 730, 1075
BspT107I	GGYRCC	1 cut(s)	206
BspTNI	GGTCTC	3 cut(s)	313, 460, 836
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	467, 673, 738
BssECI	CCNNGG	4 cut(s)	193, 399, 498, 603
BssMI	GATC	3 cut(s)	414, 722, 1067
BssSI	CACGAG	2 cut(s)	477, 996
BssT1I	CCWWGG	4 cut(s)	193, 399, 498, 603
Bst2BI	CACGAG	2 cut(s)	477, 996
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	5 cut(s)	24, 102, 827, 974, 1013
Bst6I	CTCTTC	2 cut(s)	516, 559
BstAPI	GCANNNNNTGC	2 cut(s)	890, 893
BstAUI	TGTACA	1 cut(s)	513
BstBAI	YACGTR	2 cut(s)	152, 1145
BstC8I	GCNNGC	2 cut(s)	363, 423
BstDEI	CTNAG	6 cut(s)	211, 561, 654, 774, 794, 1071
BstDSI	CCRYGG	2 cut(s)	498, 603
BstF5I	GGATG	2 cut(s)	388, 826
BstKTI	GATC	3 cut(s)	417, 725, 1070
BstMAI	GTCTC	7 cut(s)	313, 355, 460, 491, 836, 948, 1067
BstMBI	GATC	3 cut(s)	414, 722, 1067
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	314
BstPAI	GACNNNNGTC	1 cut(s)	828
BstSCI	CCNGG	2 cut(s)	811, 1100
BstSFI	CTRYAG	2 cut(s)	1050, 1062
BstSLI	GKGCMC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	3 cut(s)	414, 722, 1067
BstYI	RGATCY	3 cut(s)	414, 722, 1067
Bsu36I	CCTNAGG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	168, 281, 811
BtgI	CCRYGG	2 cut(s)	498, 603
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	2 cut(s)	388, 826
BtsIMutI	CAGTG	2 cut(s)	651, 666
Cac8I	GCNNGC	2 cut(s)	363, 423
CaiI	CAGNNNCTG	3 cut(s)	653, 890, 893
Cfr13I	GGNCC	4 cut(s)	256, 279, 280, 600
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	6 cut(s)	25, 103, 514, 617, 778, 898
CviAII	CATG	8 cut(s)	220, 298, 311, 315, 366, 499, 604, 704
CviQI	GTAC	6 cut(s)	25, 103, 514, 617, 778, 898
DdeI	CTNAG	6 cut(s)	211, 561, 654, 774, 794, 1071
DpnI	GATC	3 cut(s)	416, 724, 1069
DpnII	GATC	3 cut(s)	414, 722, 1067
DriI	GACNNNNNGTC	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	516, 559
Eam1105I	GACNNNNNGTC	1 cut(s)	447
EarI	CTCTTC	2 cut(s)	516, 559
Eco130I	CCWWGG	4 cut(s)	193, 399, 498, 603
Eco147I	AGGCCT	1 cut(s)	811
Eco24I	GRGCYC	1 cut(s)	283
Eco31I	GGTCTC	3 cut(s)	313, 460, 836
Eco47I	GGWCC	2 cut(s)	256, 600
Eco57I	CTGAAG	2 cut(s)	269, 789
Eco81I	CCTNAGG	1 cut(s)	211
EcoO109I	RGGNCCY	2 cut(s)	279, 280
EcoRII	CCWGG	1 cut(s)	811
EcoT14I	CCWWGG	4 cut(s)	193, 399, 498, 603
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	4 cut(s)	193, 399, 498, 603
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	8 cut(s)	223, 301, 314, 318, 369, 502, 607, 707
FaqI	GGGAC	2 cut(s)	1015, 1046
FatI	CATG	8 cut(s)	219, 297, 310, 314, 365, 498, 603, 703
FauI	CCCGC	2 cut(s)	73, 929
FokI	GGATG	2 cut(s)	375, 833
FriOI	GRGCYC	1 cut(s)	283
FspBI	CTAG	4 cut(s)	5, 422, 444, 633
GsaI	CCCAGC	2 cut(s)	732, 917
HaeIII	GGCC	3 cut(s)	168, 281, 811
HapII	CCGG	3 cut(s)	338, 908, 1101
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	8 cut(s)	223, 301, 314, 318, 369, 502, 607, 707
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	791
HinfI	GANTC	6 cut(s)	404, 545, 683, 754, 1003, 1097
HpaII	CCGG	3 cut(s)	338, 908, 1101
HphI	GGTGA	2 cut(s)	542, 599
Hpy166II	GTNNAC	3 cut(s)	16, 105, 256
Hpy188I	TCNGA	7 cut(s)	45, 409, 562, 841, 855, 948, 1072
Hpy188III	TCNNGA	4 cut(s)	213, 490, 745, 761
Hpy8I	GTNNAC	3 cut(s)	16, 105, 256
HpyAV	CCTTC	3 cut(s)	293, 395, 578
HpyCH4III	ACNGT	5 cut(s)	24, 102, 827, 974, 1013
HpyCH4IV	ACGT	3 cut(s)	151, 708, 1144
HpyF3I	CTNAG	6 cut(s)	211, 561, 654, 774, 794, 1071
HpySE526I	ACGT	3 cut(s)	151, 708, 1144
Hsp92II	CATG	8 cut(s)	223, 301, 314, 318, 369, 502, 607, 707
Kzo9I	GATC	3 cut(s)	414, 722, 1067
LmnI	GCTCC	2 cut(s)	199, 910
LweI	GCATC	7 cut(s)	36, 145, 271, 291, 523, 832, 894
MaeI	CTAG	4 cut(s)	5, 422, 444, 633
MaeII	ACGT	3 cut(s)	151, 708, 1144
MaeIII	GTNAC	4 cut(s)	587, 751, 758, 968
MalI	GATC	3 cut(s)	416, 724, 1069
MboI	GATC	3 cut(s)	414, 722, 1067
MboII	GAAGA	4 cut(s)	533, 546, 620, 1050
MflI	RGATCY	3 cut(s)	414, 722, 1067
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	2 cut(s)	354, 674
MlyI	GAGTC	3 cut(s)	677, 748, 997
MmeI	TCCRAC	3 cut(s)	211, 573, 717
Mph1103I	ATGCAT	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	702
MspA1I	CMGCKG	2 cut(s)	728, 890
MspI	CCGG	3 cut(s)	338, 908, 1101
MspR9I	CCNGG	2 cut(s)	813, 1102
Mva1269I	GAATGC	1 cut(s)	1094
MvaI	CCWGG	1 cut(s)	813
NciI	CCSGG	1 cut(s)	1102
NcoI	CCATGG	2 cut(s)	498, 603
NdeII	GATC	3 cut(s)	414, 722, 1067
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	8 cut(s)	223, 301, 314, 318, 369, 502, 607, 707
NlaIV	GGNNCC	4 cut(s)	208, 281, 724, 1106
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	4 cut(s)	587, 751, 758, 968
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	314
PceI	AGGCCT	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PctI	GAATGC	1 cut(s)	1094
PfeI	GAWTC	3 cut(s)	404, 545, 1097
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	1100
PleI	GAGTC	3 cut(s)	677, 748, 997
PpsI	GAGTC	3 cut(s)	677, 748, 997
Ppu21I	YACGTR	2 cut(s)	152, 1145
PshAI	GACNNNNGTC	1 cut(s)	828
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	811
PspFI	CCCAGC	2 cut(s)	728, 913
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	4 cut(s)	208, 281, 724, 1106
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	4 cut(s)	256, 279, 280, 600
PstI	CTGCAG	1 cut(s)	1054
PstNI	CAGNNNCTG	3 cut(s)	653, 890, 893
PsuI	RGATCY	3 cut(s)	414, 722, 1067
PvuII	CAGCTG	1 cut(s)	890
RsaI	GTAC	6 cut(s)	26, 104, 515, 618, 779, 899
RsaNI	GTAC	6 cut(s)	25, 103, 514, 617, 778, 898
RseI	CAYNNNNRTG	1 cut(s)	702
Sau3AI	GATC	3 cut(s)	414, 722, 1067
Sau96I	GGNCC	4 cut(s)	256, 279, 280, 600
SchI	GAGTC	3 cut(s)	677, 748, 997
ScrFI	CCNGG	2 cut(s)	813, 1102
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	7 cut(s)	36, 145, 271, 291, 523, 832, 894
SfcI	CTRYAG	2 cut(s)	1050, 1062
SinI	GGWCC	2 cut(s)	256, 600
SmiMI	CAYNNNNRTG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	354, 674
SseBI	AGGCCT	1 cut(s)	811
SsiI	CCGC	4 cut(s)	80, 726, 936, 978
SspMI	CTAG	4 cut(s)	5, 422, 444, 633
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	2 cut(s)	811, 1100
StyI	CCWWGG	4 cut(s)	193, 399, 498, 603
TaaI	ACNGT	5 cut(s)	24, 102, 827, 974, 1013
TaiI	ACGT	3 cut(s)	154, 711, 1147
TaqI	TCGA	1 cut(s)	644
TasI	AATT	2 cut(s)	354, 674
TatI	WGTACW	2 cut(s)	513, 616
TfiI	GAWTC	3 cut(s)	404, 545, 1097
TscAI	CASTG	2 cut(s)	658, 673
TseFI	GTSAC	4 cut(s)	587, 751, 758, 968
Tsp45I	GTSAC	4 cut(s)	587, 751, 758, 968
TspDTI	ATGAA	3 cut(s)	236, 377, 546
TspGWI	ACGGA	2 cut(s)	236, 627
TspRI	CASTG	2 cut(s)	658, 673
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	2 cut(s)	256, 600
XceI	RCATGY	1 cut(s)	314
XspI	CTAG	4 cut(s)	5, 422, 444, 633
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.