Rorug06G0023900

BEL1-like homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005992
Physical Location & Seq
Reverse (-)
2921215 .. 2930026
8812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0023900.1

Sequence Viewer

Length: 6210 bp
ATGGCCGATTCTGGAGCTAACCCTAAACAGAGACAACCCAAGAAGAACAAGAAGAAGAGAAAGCAGAGCGAACCCCAAGAATCTGAAAGGCCACCCAAGACTAACCGCACCAATTCATCAGAGAACGAGAATGAACCACAAGACCAAAACTTTGAAGTCGGAAAAGCTGAAAAACCCAATCAAGGTGGTCCATGGAGGAACCTGGAGTTAATTCTGTCAATCCAGAACAGAGAGCTTGATCTTCACAAGAAGGTGGAACTAGCTCATGGTTTTGTGATGTCGAGGGTGAAGGAAGAAGGAGGCAGCCGTGATGAGGATAATCAAGCAGTGAACATGTCACGTTTAGTAATTTTTGTCAGTGATTGGATCCAGTCATTGTTGATTTCCGAAGGAAATAAAGTTGAGAGTGGTGGAGAGAAGCATCAAGCTGAAGTTATTTATACGTATTTGGATTTAAGATGCTGGGAGATTTTCAAATTCTGTTTGGAGCAGTCTCTGAAATTAAATGTTTCGTTAAGTTTCTCACGGAACCTTTTACGCTCTATATGTTGGATTGCAAGGAGCGCACTGTCCTTATTGAACAAAAAAATTATTGGTGAAGGGTTACAATTGTACACTACTGTGCTTGATTGTATTTCTTTGGTATTTTCATCCCAAGAAGGCTTCTCAAATGAAAATTTAGACATGTGGATTATAACTGTAAGTTCAGTTCTTGACCTTGGACACAAATTTTACAGTGAAGCTCTTGTTAGTGGCAATGAGGGTGTATTTGTTTTCCAATTCTTGTGCTTGGTGCTTGAGCCATTTGCCAGGTTTTTAAGGGCTCACGCTCGGAAAGATGGATTTCGTGATTTTAGTAATAAGCTCCTTGAGCCTCTGTTGCATCTCTTGGGTCTCTTGCATCTCCAGATTGGTGGAAGTAATCCTGGTTGGAGAAGAAACTTACTGAAGCTTGTTGAAGATGTATTATCTCATGGGCTATATCACCCGCTCCACATTGATGGGTTTTTGAGCTTATGCAGTACTGAAAAAGACACCACATCCAATGATGGGAAGTCAAAAGATTCCAAAACAATCAACCAAAGTTATCATAGACATTTATTTGATAAAGTGGAAGGAATTTTAGCTGCAAAGAATGCATTTGCAGTAGAAAGCATAGGAGTATTGTTTCACTTGCTTATTGATCAAGTTAAAAAGCTAAAGAGGGATTCAGCGCTGACTGCAAGTACCAAAATGATGGGGAAGAGTGAAGGTTCAAGGCAGTTAGAAGATAGTTCATTGGGTCAAACGTCTATGATGTCTTCTGAGAGTCGTATTGTTGAAAAGAATTATTGCTCAACTAGTTTCAATCCAGGAACACGAAAGTCACTTCACGATTTTTTTGTACTGATTATGGAGCCTCTTTTGCTTGAGATCAATGGCTTTCTTGAAACTAAGCTGAAAGTGGGCCCTGAATTGTTGGATATTCATTGCACACTTAAAGCTATAAATAATGTACTTTCGGTCTTTATGCATGAAAAGATTTATGTGAGAACAGAGGATGCCTCTGAGGGAGCTTCTCTTAATTTCTTGAAGAAGGTTTATAATATTATCATCTCATTGTCCTCAGATTTAATTCAGTTGTCAGTTACACACTCAGATAATTTTAGTCTAATAGCAAATGAGGTACTTTCTGCTGTTGGCTATCTTATGGAAATTGAATATGATGTTCTAGAGAATGATCTAGTAAGCTTGTGGTTAATGATCCTCTCTTACTGGGCCATTGGGCTTTCTTTGGTGGATTCTCCGGATAGATGCTCATTATTCTCCAAGATAACAGATATTGGATGCCAATTAATTATGCTCTATAGTCAACTTCGCCAGGTGAATAATACTATCTTTGCATTGTGTAAAGCAATAAGGGTTATTAATTTACATAATAGCGATGGTCAACTGAACTATACTAGATTTGTCATTCCTTTTCATGGTGAAGCATATGCAAAAGCTGTGGAAATGCTATTATCTGCACATGAATTCAAAATTGCAATTCATAAAGCAATGAAGTCCATACCAGAAGGACAAGCAAGTCAATGTATTCGGCAGTTAACATTGGATATATCAGAATCTCTAGAGTGGATGAAAGTTAGTTGTTCGGAGGCTGATGAAAAAGAATTTTCTGAATGCCATCTAAGTAGCTTGCACAGTTTTAATCTGGAAGCTGAACTTTTTGGGAGAGGGTTGTCAGAAATATATGCATTATTCCTAGAGTCATTGATTGTCACAACTGGAAACTGTAACCTTCTTGGCGTCTCTATAAAGGAATTAATTAGAGTGATTTTCCCTTGCATGAGCAATCTGGTTGGACCACAGCAGGAGGATGCTGTAAACAAATTCCTATGGTCTGTCGCGGTAAAAGATTCTGACAATGTGATCGATAGAAACAAAAACAAATATATGATATTTGGAGTCTCCACTTATTGGGTAGTTTTGTTCTTCTTTCGATTGTATAGCTCCTGCCGATGCTTATATAGGCAAGCAGCAATCCTTATGCCTCCAGATTTATCAAGAAAGATGTCTGCAGAAATGGGAGATTCCTTCTCTTCATTCTCGGGCAGGGATTGGATGGAAATGTCTGATTGGATCAATGGGGGATTTTTCTCTTGGATTGTACAACCTTCAGCTTCTCTGTTTTCTGTTATTCAATCTGTTTCAAATATCTTTTGTAAGGACCGTGCAGCTGATTCTTGTCCTTTAACTTATCTAATGCATGCTATGGCTTGTGAAAGGCTTGTAGATTTGAATAGTCGTATAAAGTCTTTTGAATATTTGATTGAAATTGGTGACAATCTGGTGCAAGTTGCGGAGATCTCTTCTTTGAGGCAAGAGGCAGCAGGACTCACGGGATTTATGATGGAGCACCTCTCATTAGTGTCTGAAGATCAACAGCGAATATTCATTTCTGCTGATACGACTAATAATAAGATGGTTGACTATGAAAGTGATGAATGGGATTTCAGTATTTGCTCTGTGAACAAGAAGTCATTGCCAACTGCACTTTGGTGGGTTGTTTGCCAAAATATTCATGCATGGTGCCCTCATGCCTCTAAAAAGGATTTGAAGAGATTCCTTTCTCTTTTAATCCATACTTCAATTCCCTATGTAAGAAGCAGCTTTGGGGTGGTTATAGAGCACAAGAACCATGAAGCTGACAGGCTGAAGAATGTGGCATTGCATCAAATCTCATCACAGTGCTTTATTGATTCCAGTCTGTATGAGCAAAGATTTGTCCGCAGGTATTTTGCAAAGAGGTTCTGCCGTGCATTGGAGAAATCTACATTACCATTCATCAGCGACTTTCCATCCGGCAATGTTAAATTCAAATCATCACCTAATTGGCCAAATGTCTTAAGTGATTTAGAGAACTCATCATTGGCTATTTCCGGCAACAAACTCAATGTATTTGATTGTTCCTCAGCCTCAAGTTGCAAGGGACAAAACTCCCAACCATCTACCATCATGAAATTTGCAGCTTGTCAGAGTTTGCTTAATCTTTTGAGTTGCATGCCAAAAGGTCATTTGGACACGAGATCATTTTCACGTTATGTGACTTCTATTCTGAACCTCGAAAGGATTGTTGTTGGCGGCTTATTAGATTATCAGAATGCTTCATACTCAACTTATTATTATGAGCTCTTCAGATTGTTTGTGTCCTGTCGGAAGGCCTTAAGATGTATAATTACTGCTTGTGAGGAGACAGTAGCCAGTCAAACCTCAGACACTGTACTCTTTGAGGATTTATTTCCAGTTTCATGGCTTTACAAGTCAGTGCATATGGTTATTGGGCTTCAAGAATCATTCTCAAAAGATATTTATCATCAAGTTCATGATATGATCTTGGCGTTAATGGATCACACATTTTATGTGTTTCTGACATTAAATAAATATCAATCCAATCATGCTGTTCGTTTCCTTGAGGTTGCTGAGCTGAATTTTGGATGTGCCCAAGAACAGAGAAGTTTATTGAATTCGTCCAATTATATTGAAGCCTGGAAAAGTGTAAACGTTGTTGCTAAGATTTTGAAGGAACAGATGCAGATCTTACTTGTAAATGTGAAGAATGGCATTTGTAATGGAAAAGAGGAAGTTTCTGTTGATGCTTTAAATTTGAACAAGTTTGCTTCCATAATTTCGTGTTTTAGTGGGTTTTTATGGGGCCTAGCATGCGTTGTGATCGACACAGATGGGAGAAATAGTGATGAGAAAGCTAAGTTGTCAAGGTGGAAACTTGAACCAATCTCCGAACTCAACCTCTGTATAAAGGTTTTTGAAGAAATTTCTAGTCTTCTACTACAAATGTTTATTCTTGACGATAATCAGCAATCCACAACTATATGTCATGCCTATAATCTTCAGAAGTCAGGCTACAATTTAGATTTGTTGGGTGCAGAGAAGATTTTGCCGGAAGGCAATGATGCTGACACTGATATGGCATGTGGTGGACTGCAGGATGAATCTGCAGTTGCAGTGACGTGCTCAGCATTATCTGACATCTGTGAAGACTCTGTAATTGGTAGTGTTCATAGAAGAAGACCGCGCTTGAAAGATGCAAATAGTGTTGTTACTGTTCTCACTGCTGTTGATTCATTTGAACTGCAATCTTTAAATAAGCCTTTGTTGAGAAGCATGCTAAAAGGTGATTTCCCCAACGCAGCATTCTTACTGAGGCAGTTGTTAATCGCCTCTTCTGCTATTTTAAGGCTAAATTTGCATATTAAGAGCGCTCCCATGTTGTCAAGCTTGGTGCATAAGTTTGCTGGCATTATGCAAGTCTTGTTATTGGAATCAGCGGACGCAAGTCAGGTGCCACACTTCTATTATTTTGTGTGTTTAGATGGTGTTCTGAAGTATCTGGAAGAATTAGGGAATCATTTTCCTTTGACTAATCCTACCTTATCCAGAGATTTGTTTGACAAGATGGTTCAGCTACAGTTACGGGCTCTAGGGAAATGCATAACTTTACAAGGGAAAAGAGCAACTCTTGCATCTCATGAAACAAGCACCAACACACCCTTAGGAGAAAGGAGATTTTCTGAAGCATCATCTTTTTCTGGCTGGGAATATTTATTGGATGAATTCAAAGCTAGGTTGAGGTCATCATTTGCAGTGTTCATAAAGAAATCAACAGAGTTGCATCTCCAATCTGCAGTTCAAGCTATCGAAAGAGCCCTAGTTGGTGTGCGGGAAGGGTGCACAGTGAGGTATGACATATGTGCTGGAAGTGAAGATGGAGGAAAGGTTTCTTCAATTGTTGCATCTGGCATTGATTGCTTGGATTTGGTTTTGGAATTTGTTTCAGGACGCAATTTGATTGTGGTTAAAAAATACATTCAGAGGTTAATTGCCTGCATGTTCAATGTTATTCTGCATCTGCAGAGTCCACTAATCTTCTATGAGAGATTCACTCTGAGTAAAGATGATACTGATCCAGATCCAGGAACAGTCATTCTTATGTGTGTTGATGTACTGGCAAGAATTTCTGGCAAGCATGCAATATACAAAATGGATCTCTGGCATGTAGCACACTCGTTACGTATACCTTCAGCACTTTTTGAAGATTTCCATCTGTTAAAACATTCTAAATGTCCTGTTCCAAATGATTCTTCAACAAGTCCAAATAACCAACCATCCGACCCTGTAGCAAGTGTACATGTCTCTGGCATAGATAGGCAATACTCAATCGGCCTATATTCTGCTTGCTGCCGATTATTGCATAATGTTGTGAAGCATCACAAAAGTGAATGCGAGGGGTATGTTGCTCTACTTCAAGCTTCTGTTCGTGTTCTTGTTTATTGTTTGGAGACATTGGATGCTGTTGTGGTAGCCAGGGAAGGCTTCTTTTCATGGGAAGTAGAAGAAGGAGTCAAATGTGCATGTTCTCTCAGAAGGATTTATGAAGAGCTAAGACATCAAAAAGAGGTCTTTGGTCCACACTGTTACCACTTTTTAGCTTATTACATACAGGTTTATTCAGGATATGGCCCCCGCAAAACAGGCATCAAAAGGGAAATAGATGAAGCTCTAAGACCAGGTGTATATGCGCTGATAGATGTTTGCTCACCTGATGATCTTCAACGTCTTCATACCTCATTTGGAGAGGGTCCTTGCAGAAACACTTTGGCAACCTTGAAGCACGATTACGAACTCAATTTCCAGTACCAGGGAAAAGTCTAA

Protein Analysis

2069

Amino Acids

233.27

Weight (kDa)

6.29

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urb2 PF10441 1830 - 2068 3.8e-37 Urb2/Npa2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 695, 1584
AasI GACNNNNNNGTC 1 cut(s) 2064
Acc36I ACCTGC 1 cut(s) 3261
AccB1I GGYRCC 2 cut(s) 3069, 4840
AccB7I CCANNNNNTGG 1 cut(s) 2457
AccBSI CCGCTC 1 cut(s) 991
AccI GTMKAC 1 cut(s) 5572
AccII CGCG 2 cut(s) 2387, 4573
AccIII TCCGGA 1 cut(s) 1786
AclI AACGTT 1 cut(s) 4041
AclWI GGATC 8 cut(s) 361, 374, 1738, 2627, 3894, 5456, 5462, 5550
AcoI YGGCCR 2 cut(s) 3, 3374
AcyI GRCGYC 1 cut(s) 2286
AfeI AGCGCT 2 cut(s) 1215, 4759
AfiI CCNNNNNNNGG 8 cut(s) 182, 313, 1050, 1964, 2457, 3301, 5471, 6196
AflII CTTAAG 2 cut(s) 3385, 3703
AflIII ACRYGT 3 cut(s) 333, 684, 5686
AhlI ACTAGT 1 cut(s) 1340
AjiI CACGTC 1 cut(s) 4509
AjuI GAANNNNNNNTTGG 8 cut(s) 3392, 3424, 4676, 4708, 5169, 5201, 5623, 5655
AleI CACNNNNGTG 3 cut(s) 620, 3037, 5772
AloI GAACNNNNNNTCC 2 cut(s) 6171, 6203
Alw21I GWGCWC 5 cut(s) 2898, 3171, 3672, 4514, 5231
Alw26I GTCTC 8 cut(s) 25, 498, 899, 2293, 2452, 3725, 5695, 5831
Alw44I GTGCAC 1 cut(s) 5227
AlwI GGATC 8 cut(s) 361, 374, 1738, 2627, 3894, 5456, 5462, 5550
AlwNI CAGNNNCTG 2 cut(s) 496, 3758
Ama87I CYCGRG 1 cut(s) 2587
Aor13HI TCCGGA 1 cut(s) 1786
Aor51HI AGCGCT 2 cut(s) 1215, 4759
AoxI GGCC 9 cut(s) 3, 89, 1447, 1758, 3374, 3699, 4192, 5719, 6016
ApaI GGGCCC 1 cut(s) 1451
ApaLI GTGCAC 1 cut(s) 5227
ApeKI GCWGC 9 cut(s) 303, 1127, 2516, 2714, 2867, 3147, 3506, 4688, 5736
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AseI ATTAAT 3 cut(s) 1835, 1908, 2303
Asp700I GAANNNNTTC 2 cut(s) 3101, 5275
AspLEI GCGC 5 cut(s) 566, 1216, 4575, 4760, 6079
AsuHPI GGTGA 9 cut(s) 298, 608, 977, 1876, 1979, 2831, 3357, 4685, 6087
AvaI CYCGRG 1 cut(s) 2587
AvaII GGWCC 5 cut(s) 188, 2342, 2707, 5963, 6137
AxyI CCTNAGG 1 cut(s) 5050
BaeGI GKGCMC 4 cut(s) 1451, 3074, 3982, 5231
BalI TGGCCA 1 cut(s) 3376
BamHI GGATCC 1 cut(s) 366
BanI GGYRCC 2 cut(s) 3069, 4840
BanII GRGCYC 5 cut(s) 826, 1451, 3672, 4978, 5206
BarI GAAGNNNNNNTAC 4 cut(s) 4385, 4417, 6158, 6190
BauI CACGAG 1 cut(s) 3562
BbsI GAAGAC 5 cut(s) 1293, 4313, 4542, 4573, 6107
Bbv12I GWGCWC 5 cut(s) 2898, 3171, 3672, 4514, 5231
BbvCI CCTCAGC 1 cut(s) 3451
BbvI GCAGC 9 cut(s) 315, 1114, 2528, 2726, 2879, 3159, 3518, 4700, 5723
BceAI ACGGC 2 cut(s) 291, 3279
BclI TGATCA 1 cut(s) 1183
BcoDI GTCTC 8 cut(s) 25, 498, 899, 2293, 2452, 3725, 5695, 5831
BcuI ACTAGT 1 cut(s) 1340
BfmI CTRYAG 8 cut(s) 1846, 2556, 4481, 4494, 4964, 5181, 5408, 5673
BfoI RGCGCY 2 cut(s) 1217, 4761
BfrI CTTAAG 2 cut(s) 3385, 3703
BfuAI ACCTGC 1 cut(s) 3261
BglII AGATCT 2 cut(s) 2844, 4074
BlpI GCTNAGC 2 cut(s) 3960, 4513
BmcAI AGTACT 1 cut(s) 1024
Bme18I GGWCC 5 cut(s) 188, 2342, 2707, 5963, 6137
BmeT110I CYCGRG 1 cut(s) 2587
BmgBI CACGTC 1 cut(s) 4509
BmrI ACTGGG 1 cut(s) 1765
BmuI ACTGGG 1 cut(s) 1765
BoxI GACNNNNGTC 1 cut(s) 4833
BpiI GAAGAC 5 cut(s) 1293, 4313, 4542, 4573, 6107
BplI GAGNNNNNCTC 6 cut(s) 1529, 1561, 2885, 2917, 5425, 5457
BpmI CTGGAG 4 cut(s) 33, 224, 890, 2517
Bpu10I CCTNAGC 1 cut(s) 3451
Bpu1102I GCTNAGC 2 cut(s) 3960, 4513
BpuEI CTTGAG 5 cut(s) 818, 890, 1430, 3442, 3971
Bsa29I ATCGAT 1 cut(s) 2412
BsaAI YACGTR 2 cut(s) 444, 5570
BsaBI GATNNNNATC 5 cut(s) 3849, 4073, 5460, 5466, 5598
BsaHI GRCGYC 1 cut(s) 2286
BsaI GGTCTC 1 cut(s) 899
BsaJI CCNNGG 4 cut(s) 191, 718, 5862, 6196
BsaWI WCCGGW 1 cut(s) 1786
BsaXI ACNNNNNCTCC 4 cut(s) 4216, 4246, 5259, 5289
Bsc4I CCNNNNNNNGG 8 cut(s) 182, 313, 1050, 1964, 2457, 3301, 5471, 6196
Bse1I ACTGG 8 cut(s) 370, 1760, 2269, 3243, 3741, 3782, 5508, 6190
Bse21I CCTNAGG 1 cut(s) 5050
Bse3DI GCAATG 7 cut(s) 763, 1468, 2043, 3020, 3206, 3352, 4453
Bse8I GATNNNNATC 5 cut(s) 3849, 4073, 5460, 5466, 5598
BseAI TCCGGA 1 cut(s) 1786
BseCI ATCGAT 1 cut(s) 2412
BseDI CCNNGG 4 cut(s) 191, 718, 5862, 6196
BseJI GATNNNNATC 5 cut(s) 3849, 4073, 5460, 5466, 5598
BseLI CCNNNNNNNGG 8 cut(s) 182, 313, 1050, 1964, 2457, 3301, 5471, 6196
BseMI GCAATG 7 cut(s) 763, 1468, 2043, 3020, 3206, 3352, 4453
BseNI ACTGG 8 cut(s) 370, 1760, 2269, 3243, 3741, 3782, 5508, 6190
BseRI GAGGAG 1 cut(s) 3743
BseSI GKGCMC 4 cut(s) 1451, 3074, 3982, 5231
BseXI GCAGC 9 cut(s) 315, 1114, 2528, 2726, 2879, 3159, 3518, 4700, 5723
BseYI CCCAGC 2 cut(s) 462, 5091
BsgI GTGCAG 4 cut(s) 1989, 2733, 3015, 4443
Bsh1236I CGCG 2 cut(s) 2387, 4573
BshFI GGCC 9 cut(s) 5, 91, 1449, 1760, 3376, 3701, 4194, 5721, 6018
BshNI GGYRCC 2 cut(s) 3069, 4840
BshVI ATCGAT 1 cut(s) 2412
BsiHKAI GWGCWC 5 cut(s) 2898, 3171, 3672, 4514, 5231
BsiHKCI CYCGRG 1 cut(s) 2587
BsiSI CCGG 4 cut(s) 1787, 3342, 3420, 4439
BslFI GGGAC 1 cut(s) 3483
BslI CCNNNNNNNGG 8 cut(s) 182, 313, 1050, 1964, 2457, 3301, 5471, 6196
BsmAI GTCTC 8 cut(s) 25, 498, 899, 2293, 2452, 3725, 5695, 5831
BsmBI CGTCTC 1 cut(s) 2293
BsmFI GGGAC 1 cut(s) 3483
BsmI GAATGC 5 cut(s) 1141, 2165, 3646, 4691, 5783
BsnI GGCC 9 cut(s) 5, 91, 1449, 1760, 3376, 3701, 4194, 5721, 6018
Bso31I GGTCTC 1 cut(s) 899
BsoBI CYCGRG 1 cut(s) 2587
Bsp120I GGGCCC 1 cut(s) 1447
Bsp13I TCCGGA 1 cut(s) 1786
Bsp1407I TGTACA 3 cut(s) 612, 2647, 5683
Bsp1720I GCTNAGC 2 cut(s) 3960, 4513
Bsp19I CCATGG 1 cut(s) 191
BspANI GGCC 9 cut(s) 5, 91, 1449, 1760, 3376, 3701, 4194, 5721, 6018
BspDI ATCGAT 1 cut(s) 2412
BspEI TCCGGA 1 cut(s) 1786
BspFNI CGCG 2 cut(s) 2387, 4573
BspHI TCATGA 3 cut(s) 3495, 3862, 5026
BspMAI CTGCAG 5 cut(s) 2560, 4485, 4498, 5185, 5412
BspMI ACCTGC 1 cut(s) 3261
BspPI GGATC 8 cut(s) 361, 374, 1738, 2627, 3894, 5456, 5462, 5550
BspQI GCTCTTC 2 cut(s) 3677, 5928
BspT107I GGYRCC 2 cut(s) 3069, 4840
BspTI CTTAAG 2 cut(s) 3385, 3703
BspTNI GGTCTC 1 cut(s) 899
BsrBI CCGCTC 1 cut(s) 991
BsrDI GCAATG 7 cut(s) 763, 1468, 2043, 3020, 3206, 3352, 4453
BsrGI TGTACA 3 cut(s) 612, 2647, 5683
BsrI ACTGG 8 cut(s) 370, 1760, 2269, 3243, 3741, 3782, 5508, 6190
BssECI CCNNGG 4 cut(s) 191, 718, 5862, 6196
BssNAI GTATAC 1 cut(s) 5573
BssNI GRCGYC 1 cut(s) 2286
BssSI CACGAG 1 cut(s) 3562
BssT1I CCWWGG 2 cut(s) 191, 718
Bst1107I GTATAC 1 cut(s) 5573
Bst2BI CACGAG 1 cut(s) 3562
Bst6I CTCTTC 8 cut(s) 50, 1238, 2584, 2854, 3092, 3677, 4726, 5928
BstACI GRCGYC 1 cut(s) 2286
BstAFI CTTAAG 2 cut(s) 3385, 3703
BstAPI GCANNNNNTGC 3 cut(s) 1136, 5018, 5304
BstAUI TGTACA 3 cut(s) 612, 2647, 5683
BstBAI YACGTR 2 cut(s) 444, 5570
BstDSI CCRYGG 1 cut(s) 191
BstFNI CGCG 2 cut(s) 2387, 4573
BstH2I RGCGCY 2 cut(s) 1217, 4761
BstHHI GCGC 5 cut(s) 566, 1216, 4575, 4760, 6079
BstMAI GTCTC 8 cut(s) 25, 498, 899, 2293, 2452, 3725, 5695, 5831
BstPAI GACNNNNGTC 1 cut(s) 4833
BstSFI CTRYAG 8 cut(s) 1846, 2556, 4481, 4494, 4964, 5181, 5408, 5673
BstSLI GKGCMC 4 cut(s) 1451, 3074, 3982, 5231
BstSNI TACGTA 2 cut(s) 444, 5570
BstUI CGCG 2 cut(s) 2387, 4573
BstV1I GCAGC 9 cut(s) 315, 1114, 2528, 2726, 2879, 3159, 3518, 4700, 5723
BstV2I GAAGAC 5 cut(s) 1293, 4313, 4542, 4573, 6107
BstX2I RGATCY 5 cut(s) 366, 2844, 4074, 5467, 5542
BstXI CCANNNNNNTGG 4 cut(s) 914, 1001, 1237, 3789
BstYI RGATCY 5 cut(s) 366, 2844, 4074, 5467, 5542
BstZ17I GTATAC 1 cut(s) 5573
Bsu15I ATCGAT 1 cut(s) 2412
Bsu36I CCTNAGG 1 cut(s) 5050
BsuRI GGCC 9 cut(s) 5, 91, 1449, 1760, 3376, 3701, 4194, 5721, 6018
BsuTUI ATCGAT 1 cut(s) 2412
BtgI CCRYGG 1 cut(s) 191
BtgZI GCGATG 1 cut(s) 1938
BtrI CACGTC 1 cut(s) 4509
BtsI GCAGTG 4 cut(s) 333, 4509, 4608, 5148
BveI ACCTGC 1 cut(s) 3261
CaiI CAGNNNCTG 2 cut(s) 496, 3758
CciI TCATGA 3 cut(s) 3495, 3862, 5026
CfoI GCGC 5 cut(s) 566, 1216, 4575, 4760, 6079
ClaI ATCGAT 1 cut(s) 2412
CseI GACGC 3 cut(s) 2275, 4838, 5346
CsiI ACCWGGT 1 cut(s) 6064
CspCI CAANNNNNGTGG 4 cut(s) 166, 201, 1968, 2003
DraI TTTAAA 2 cut(s) 4140, 4641
DrdI GACNNNNNNGTC 1 cut(s) 2064
DseDI GACNNNNNNGTC 1 cut(s) 2064
EaeI YGGCCR 2 cut(s) 3, 3374
Eam1104I CTCTTC 8 cut(s) 50, 1238, 2584, 2854, 3092, 3677, 4726, 5928
EarI CTCTTC 8 cut(s) 50, 1238, 2584, 2854, 3092, 3677, 4726, 5928
Ecl136II GAGCTC 1 cut(s) 3670
Eco105I TACGTA 2 cut(s) 444, 5570
Eco130I CCWWGG 2 cut(s) 191, 718
Eco147I AGGCCT 1 cut(s) 3701
Eco24I GRGCYC 5 cut(s) 826, 1451, 3672, 4978, 5206
Eco31I GGTCTC 1 cut(s) 899
Eco47I GGWCC 5 cut(s) 188, 2342, 2707, 5963, 6137
Eco47III AGCGCT 2 cut(s) 1215, 4759
Eco53kI GAGCTC 1 cut(s) 3670
Eco81I CCTNAGG 1 cut(s) 5050
Eco88I CYCGRG 1 cut(s) 2587
EcoICRI GAGCTC 1 cut(s) 3670
EcoO109I RGGNCCY 3 cut(s) 1448, 4192, 6137
EcoRI GAATTC 3 cut(s) 2012, 4003, 5111
EcoT14I CCWWGG 2 cut(s) 191, 718
EcoT22I ATGCAT 6 cut(s) 1141, 1515, 2236, 2748, 3067, 4991
EcoT38I GRGCYC 5 cut(s) 826, 1451, 3672, 4978, 5206
ErhI CCWWGG 2 cut(s) 191, 718
Esp3I CGTCTC 1 cut(s) 2293
FalI AAGNNNNNCTT 2 cut(s) 2187, 2219
FaqI GGGAC 1 cut(s) 3483
FauI CCCGC 3 cut(s) 996, 5211, 6029
FauNDI CATATG 3 cut(s) 1975, 3810, 5246
FbaI TGATCA 1 cut(s) 1183
FblI GTMKAC 1 cut(s) 5572
FriOI GRGCYC 5 cut(s) 826, 1451, 3672, 4978, 5206
GlaI GCGC 5 cut(s) 565, 1215, 4574, 4759, 6078
GsaI CCCAGC 2 cut(s) 466, 5095
GsuI CTGGAG 4 cut(s) 33, 224, 890, 2517
HaeII RGCGCY 2 cut(s) 1217, 4761
HaeIII GGCC 9 cut(s) 5, 91, 1449, 1760, 3376, 3701, 4194, 5721, 6018
HapII CCGG 4 cut(s) 1787, 3342, 3420, 4439
HgaI GACGC 3 cut(s) 2275, 4838, 5346
HhaI GCGC 5 cut(s) 566, 1216, 4575, 4760, 6079
Hin1I GRCGYC 1 cut(s) 2286
Hin6I GCGC 5 cut(s) 564, 1214, 4573, 4758, 6077
HinP1I GCGC 5 cut(s) 564, 1214, 4573, 4758, 6077
HincII GTYRAC 4 cut(s) 1853, 1931, 2085, 2968
HindII GTYRAC 4 cut(s) 1853, 1931, 2085, 2968
HindIII AAGCTT 4 cut(s) 950, 1729, 4774, 5805
HpaI GTTAAC 1 cut(s) 2085
HpaII CCGG 4 cut(s) 1787, 3342, 3420, 4439
HphI GGTGA 9 cut(s) 298, 608, 977, 1876, 1979, 2831, 3357, 4685, 6087
HpyCH4IV ACGT 8 cut(s) 340, 443, 1289, 3577, 4041, 4508, 5569, 6112
HpySE526I ACGT 8 cut(s) 340, 443, 1289, 3577, 4041, 4508, 5569, 6112
Hsp92I GRCGYC 1 cut(s) 2286
HspAI GCGC 5 cut(s) 564, 1214, 4573, 4758, 6077
Kpn2I TCCGGA 1 cut(s) 1786
Ksp22I TGATCA 1 cut(s) 1183
KspAI GTTAAC 1 cut(s) 2085
LguI GCTCTTC 2 cut(s) 3677, 5928
Lsp1109I GCAGC 9 cut(s) 315, 1114, 2528, 2726, 2879, 3159, 3518, 4700, 5723
MabI ACCWGGT 1 cut(s) 6064
MaeII ACGT 8 cut(s) 340, 443, 1289, 3577, 4041, 4508, 5569, 6112
MbiI CCGCTC 1 cut(s) 991
MfeI CAATTG 2 cut(s) 608, 5283
MflI RGATCY 5 cut(s) 366, 2844, 4074, 5467, 5542
MlsI TGGCCA 1 cut(s) 3376
MluNI TGGCCA 1 cut(s) 3376
MlyI GAGTC 7 cut(s) 1318, 2255, 2454, 2868, 4532, 5422, 5907
MmeI TCCRAC 7 cut(s) 139, 530, 911, 1440, 2320, 3674, 5691
Mox20I TGGCCA 1 cut(s) 3376
Mph1103I ATGCAT 6 cut(s) 1141, 1515, 2236, 2748, 3067, 4991
MroI TCCGGA 1 cut(s) 1786
MroXI GAANNNNTTC 2 cut(s) 3101, 5275
MscI TGGCCA 1 cut(s) 3376
MslI CAYNNNNRTG 7 cut(s) 620, 999, 3037, 3226, 4463, 5486, 5772
Msp20I TGGCCA 1 cut(s) 3376
MspA1I CMGCKG 2 cut(s) 2717, 4826
MspCI CTTAAG 2 cut(s) 3385, 3703
MspI CCGG 4 cut(s) 1787, 3342, 3420, 4439
MunI CAATTG 2 cut(s) 608, 5283
Mva1269I GAATGC 5 cut(s) 1141, 2165, 3646, 4691, 5783
MvnI CGCG 2 cut(s) 2387, 4573
NcoI CCATGG 1 cut(s) 191
NdeI CATATG 3 cut(s) 1975, 3810, 5246
NmuCI GTSAC 6 cut(s) 336, 1365, 2257, 2819, 3583, 4504
NsiI ATGCAT 6 cut(s) 1141, 1515, 2236, 2748, 3067, 4991
OliI CACNNNNGTG 3 cut(s) 620, 3037, 5772
PaeI GCATGC 5 cut(s) 2750, 3544, 4203, 4666, 5528
PagI TCATGA 3 cut(s) 3495, 3862, 5026
PceI AGGCCT 1 cut(s) 3701
PciI ACATGT 3 cut(s) 333, 684, 5686
PciSI GCTCTTC 2 cut(s) 3677, 5928
PctI GAATGC 5 cut(s) 1141, 2165, 3646, 4691, 5783
PdmI GAANNNNTTC 2 cut(s) 3101, 5275
PflMI CCANNNNNTGG 1 cut(s) 2457
PfoI TCCNGGA 2 cut(s) 1351, 5470
PleI GAGTC 7 cut(s) 1317, 2254, 2453, 2868, 4532, 5421, 5906
PpsI GAGTC 7 cut(s) 1317, 2254, 2453, 2868, 4532, 5421, 5906
Ppu21I YACGTR 2 cut(s) 444, 5570
PpuMI RGGWCCY 1 cut(s) 6137
PscI ACATGT 3 cut(s) 333, 684, 5686
PshAI GACNNNNGTC 1 cut(s) 4833
PshBI ATTAAT 3 cut(s) 1835, 1908, 2303
PsiI TTATAA 2 cut(s) 695, 1584
Psp124BI GAGCTC 1 cut(s) 3672
Psp1406I AACGTT 1 cut(s) 4041
Psp5II RGGWCCY 1 cut(s) 6137
PspFI CCCAGC 2 cut(s) 462, 5091
PspOMI GGGCCC 1 cut(s) 1447
PspPPI RGGWCCY 1 cut(s) 6137
PsrI GAACNNNNNNTAC 2 cut(s) 693, 725
PstI CTGCAG 5 cut(s) 2560, 4485, 4498, 5185, 5412
PstNI CAGNNNCTG 2 cut(s) 496, 3758
PsuI RGATCY 5 cut(s) 366, 2844, 4074, 5467, 5542
PvuII CAGCTG 1 cut(s) 2717
RseI CAYNNNNRTG 7 cut(s) 620, 999, 3037, 3226, 4463, 5486, 5772
SacI GAGCTC 1 cut(s) 3672
SapI GCTCTTC 2 cut(s) 3677, 5928
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 7 cut(s) 1318, 2255, 2454, 2868, 4532, 5422, 5907
SexAI ACCWGGT 1 cut(s) 6064
SfcI CTRYAG 8 cut(s) 1846, 2556, 4481, 4494, 4964, 5181, 5408, 5673
SinI GGWCC 5 cut(s) 188, 2342, 2707, 5963, 6137
SmiMI CAYNNNNRTG 7 cut(s) 620, 999, 3037, 3226, 4463, 5486, 5772
SmlI CTYRAG 7 cut(s) 797, 869, 1409, 3385, 3457, 3703, 3950
SmoI CTYRAG 7 cut(s) 797, 869, 1409, 3385, 3457, 3703, 3950
SnaBI TACGTA 2 cut(s) 444, 5570
SpeI ACTAGT 1 cut(s) 1340
SphI GCATGC 5 cut(s) 2750, 3544, 4203, 4666, 5528
SseBI AGGCCT 1 cut(s) 3701
SspI AATATT 5 cut(s) 1588, 2804, 2931, 3058, 5099
SstI GAGCTC 1 cut(s) 3672
StuI AGGCCT 1 cut(s) 3701
StyI CCWWGG 2 cut(s) 191, 718
TaiI ACGT 8 cut(s) 343, 446, 1292, 3580, 4044, 4511, 5572, 6115
TaqI TCGA 6 cut(s) 281, 2412, 2479, 3603, 4212, 5196
TaqII GACCGA 1 cut(s) 1492
TatI WGTACW 8 cut(s) 612, 1022, 1384, 1495, 2647, 3760, 5500, 5683
TauI GCSGC 1 cut(s) 3624
TseFI GTSAC 6 cut(s) 336, 1365, 2257, 2819, 3583, 4504
TseI GCWGC 9 cut(s) 303, 1127, 2516, 2714, 2867, 3147, 3506, 4688, 5736
Tsp45I GTSAC 6 cut(s) 336, 1365, 2257, 2819, 3583, 4504
TspGWI ACGGA 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 2457
Vha464I CTTAAG 2 cut(s) 3385, 3703
VneI GTGCAC 1 cut(s) 5227
VpaK11BI GGWCC 5 cut(s) 188, 2342, 2707, 5963, 6137
VspI ATTAAT 3 cut(s) 1835, 1908, 2303
XbaI TCTAGA 2 cut(s) 1711, 2107
XcmI CCANNNNNNNNNTGG 1 cut(s) 3033
XmiI GTMKAC 1 cut(s) 5572
XmnI GAANNNNTTC 2 cut(s) 3101, 5275
ZrmI AGTACT 1 cut(s) 1024
Zsp2I ATGCAT 6 cut(s) 1141, 1515, 2236, 2748, 3067, 4991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.