Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Reverse (-)

22208693 .. 22209546

Gene Structure 854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTACTTTTCTATTTCTGCACAGGTCTCAAACTGGTTTATAAATGCACGGGTGCGTCTCTGGAAACCCATGGTTGAGGAGATGTACAAAGAAGAGGCTGGTGATGCTGAAATGGACTCTAATTCTTCATCTGAAAATGCACCCCAAACCAAAAAAGGTGAGAAGAGGACCTTGGAAGACGGAGGGGAAGATATGCAGCCTAGTGCAAGTTCCACAGGCACTGATAGATGCAGCAAGGGACAATTTATGGACTCCAAACCTGATCATTATGATGGGGAAATGGCTGGATCCACTGGGTCTGCCAGCTTCCAAAATGGGACTCGTCGTGAAGCTGAAGCTGAACTTAGGCAGGGAGAAAGGCCTAGCATGGATGAAAGTAGTTTCTTTACTGATGGAATGGTTCAGTCTGATAGGAGCAGCGAAAGGTTTATGGCTGCATACCACATGCGGGAGTTGGGGAGGTTTGGAAGTGGAAGCGGCGTGTCTCTAACATTGGGGTTGCAGCATTGTGATGGTGGTAACATTCCTATCTCTAGTGGGACTCCTCACAGTTTTGTTGCCATGAGAGATGATGATTTGTACAATGCAGCAGCGTCTTCCGTTGGGTCAGAGACCGCAGATTTCGACCAGCAGCACAGATTTGGTTCCTCCCATCTATTACGCGATTTCTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

225

Amino Acids

24.72

Weight (kDa)

4.8

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	41
AccII	CGCG	1 cut(s)	663
AciI	CCGC	3 cut(s)	448, 477, 615
AclWI	GGATC	2 cut(s)	282, 295
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	3 cut(s)	5, 86, 581
AfiI	CCNNNNNNNGG	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	3 cut(s)	306, 332, 338
AluI	AGCT	3 cut(s)	306, 332, 338
Alw26I	GTCTC	4 cut(s)	31, 62, 489, 605
AlwI	GGATC	2 cut(s)	282, 295
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	8 cut(s)	196, 231, 417, 434, 502, 587, 590, 631
AspS9I	GGNCC	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	113, 170
AvaII	GGWCC	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	183, 588
BbvI	GCAGC	8 cut(s)	208, 243, 421, 429, 514, 599, 602, 643
BccI	CCATC	4 cut(s)	266, 386, 506, 660
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	4 cut(s)	31, 62, 489, 605
BfaI	CTAG	3 cut(s)	201, 363, 534
BisI	GCNGC	9 cut(s)	197, 232, 418, 435, 478, 503, 588, 591, 632
BlsI	GCNGC	9 cut(s)	198, 233, 419, 436, 479, 504, 589, 592, 633
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	2 cut(s)	289, 646
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	2 cut(s)	94, 218
BmuI	ACTGGG	1 cut(s)	303
BpiI	GAAGAC	2 cut(s)	183, 588
BsaI	GGTCTC	2 cut(s)	31, 605
BsaJI	CCNNGG	2 cut(s)	69, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	38, 298
BseDI	CCNNGG	2 cut(s)	69, 171
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseNI	ACTGG	2 cut(s)	38, 298
BseRI	GAGGAG	2 cut(s)	92, 534
BseXI	GCAGC	8 cut(s)	208, 243, 421, 429, 514, 599, 602, 643
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	361
BslFI	GGGAC	3 cut(s)	252, 331, 553
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmAI	GTCTC	4 cut(s)	31, 62, 489, 605
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	3 cut(s)	252, 331, 553
BsnI	GGCC	1 cut(s)	361
Bso31I	GGTCTC	2 cut(s)	31, 605
Bsp1407I	TGTACA	2 cut(s)	84, 579
Bsp143I	GATC	2 cut(s)	262, 287
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	3 cut(s)	448, 477, 615
BspANI	GGCC	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	2 cut(s)	289, 646
BspPI	GGATC	2 cut(s)	282, 295
BspTNI	GGTCTC	2 cut(s)	31, 605
BsrGI	TGTACA	2 cut(s)	84, 579
BsrI	ACTGG	2 cut(s)	38, 298
BssECI	CCNNGG	2 cut(s)	69, 171
BssMI	GATC	2 cut(s)	262, 287
BssT1I	CCWWGG	2 cut(s)	69, 171
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	2 cut(s)	87, 158
BstAUI	TGTACA	2 cut(s)	84, 579
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	344, 670
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	663
BstKTI	GATC	2 cut(s)	265, 290
BstMAI	GTCTC	4 cut(s)	31, 62, 489, 605
BstMBI	GATC	2 cut(s)	262, 287
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	448
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	8 cut(s)	208, 243, 421, 429, 514, 599, 602, 643
BstV2I	GAAGAC	2 cut(s)	183, 588
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	219, 291
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	2 cut(s)	44, 582
Csp6I	GTAC	3 cut(s)	4, 85, 580
CviAII	CATG	4 cut(s)	70, 367, 445, 562
CviJI	RGCY	8 cut(s)	98, 199, 284, 306, 332, 338, 361, 434
CviKI_1	RGCY	8 cut(s)	98, 199, 284, 306, 332, 338, 361, 434
CviQI	GTAC	3 cut(s)	4, 85, 580
DdeI	CTNAG	2 cut(s)	344, 670
DpnI	GATC	2 cut(s)	264, 289
DpnII	GATC	2 cut(s)	262, 287
Eam1104I	CTCTTC	2 cut(s)	87, 158
EarI	CTCTTC	2 cut(s)	87, 158
Eco130I	CCWWGG	2 cut(s)	69, 171
Eco147I	AGGCCT	1 cut(s)	361
Eco31I	GGTCTC	2 cut(s)	31, 605
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	69, 171
ErhI	CCWWGG	2 cut(s)	69, 171
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	4 cut(s)	73, 370, 448, 565
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 327, 359
FaqI	GGGAC	3 cut(s)	252, 331, 553
FatI	CATG	4 cut(s)	69, 366, 444, 561
FauI	CCCGC	1 cut(s)	441
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	9 cut(s)	197, 232, 418, 435, 478, 503, 588, 591, 632
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	9 cut(s)	197, 232, 418, 435, 478, 503, 588, 591, 632
FspBI	CTAG	3 cut(s)	201, 363, 534
GluI	GCNGC	9 cut(s)	197, 232, 418, 435, 478, 503, 588, 591, 632
HaeIII	GGCC	1 cut(s)	361
HgaI	GACGC	2 cut(s)	44, 582
Hin1II	CATG	4 cut(s)	73, 370, 448, 565
HinfI	GANTC	4 cut(s)	116, 251, 319, 541
HphI	GGTGA	2 cut(s)	113, 170
Hpy188I	TCNGA	3 cut(s)	133, 409, 610
Hpy188III	TCNNGA	2 cut(s)	61, 326
Hpy99I	CGWCG	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4V	TGCA	9 cut(s)	20, 47, 140, 196, 206, 231, 437, 502, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	344, 670
Hsp92II	CATG	4 cut(s)	73, 370, 448, 565
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	262, 287
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	8 cut(s)	208, 243, 421, 429, 514, 599, 602, 643
LweI	GCATC	2 cut(s)	94, 218
MaeI	CTAG	3 cut(s)	201, 363, 534
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	2 cut(s)	264, 289
MboI	GATC	2 cut(s)	262, 287
MboII	GAAGA	6 cut(s)	104, 117, 175, 188, 200, 588
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	2 cut(s)	121, 242
MlyI	GAGTC	4 cut(s)	110, 245, 313, 535
MnlI	CCTC	7 cut(s)	70, 88, 159, 176, 453, 555, 658
MslI	CAYNNNNRTG	2 cut(s)	270, 510
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	262, 287
NlaIII	CATG	4 cut(s)	73, 370, 448, 565
NlaIV	GGNNCC	2 cut(s)	289, 646
NspI	RCATGY	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	361
PkrI	GCNGC	9 cut(s)	198, 233, 419, 436, 479, 504, 589, 592, 633
PleI	GAGTC	4 cut(s)	110, 245, 313, 535
PpsI	GAGTC	4 cut(s)	110, 245, 313, 535
PpuMI	RGGWCCY	1 cut(s)	168
PsiI	TTATAA	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	289, 646
PspPI	GGNCC	1 cut(s)	168
PspPPI	RGGWCCY	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	3 cut(s)	5, 86, 581
RsaNI	GTAC	3 cut(s)	4, 85, 580
RseI	CAYNNNNRTG	2 cut(s)	270, 510
SatI	GCNGC	9 cut(s)	197, 232, 418, 435, 478, 503, 588, 591, 632
Sau3AI	GATC	2 cut(s)	262, 287
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	4 cut(s)	110, 245, 313, 535
SetI	ASST	9 cut(s)	27, 160, 173, 262, 308, 334, 340, 428, 464
SfaNI	GCATC	2 cut(s)	94, 218
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	270, 510
Sse9I	AATT	2 cut(s)	121, 242
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	3 cut(s)	448, 477, 615
SspMI	CTAG	3 cut(s)	201, 363, 534
StuI	AGGCCT	1 cut(s)	361
StyI	CCWWGG	2 cut(s)	69, 171
TaaI	ACNGT	1 cut(s)	551
TaqI	TCGA	1 cut(s)	624
TasI	AATT	2 cut(s)	121, 242
TatI	WGTACW	3 cut(s)	3, 84, 579
TauI	GCSGC	1 cut(s)	480
TscAI	CASTG	2 cut(s)	226, 298
TseI	GCWGC	8 cut(s)	196, 231, 417, 434, 502, 587, 590, 631
TspDTI	ATGAA	2 cut(s)	117, 387
TspGWI	ACGGA	2 cut(s)	195, 589
TspRI	CASTG	2 cut(s)	226, 298
VpaK11BI	GGWCC	1 cut(s)	168
XceI	RCATGY	1 cut(s)	448
XspI	CTAG	3 cut(s)	201, 363, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.