Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Reverse (-)

2935559 .. 2939427

Gene Structure 3869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0024000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATGAAAAGTCTCTGTTACCCGACACCTGTCTACCGTCCCAAAACTCCCGCGTCTTTCTTCTTGACACCTGGTCTGCTGCTCAGTCCTATCATGTCTTCGCTACTTCACTGCACAGAGAGGTGGAGAAAGAGAGAGAAATAGCGAAGAAGGTGATTATCGGGTTTACTGATCGATCAAAGCTGGATAGAGTTTGGGTTCTTCTTGATTCATCGAACAGAAAGCGGACTGTTCAGCGAAAGAGCCTGGTTTCAATCCCAGTGGCTGCTCTTGACCTTGATAATGAAGAAACTACAAAAGAAGTACTTTCCAAAGAGGCCTTGGCAAAGAAACAATCCACCAAAACTAGAGAGGCCGTTGAATTATTGTCAACAGGAAAGAGCTATATTGGTGCAGCTAATGAAAGACTAGACAATGTGTTCGGCAATCTCACCAATCAGCGAGGAATGGTTCTTCCTTTTGAACCGCTCTCAGCTACATCTGATAAAATCAGATATGCTGTTGACATGCCACAGTTCAGACCATACGATAGAGGTTCCAGGGACCATAGTCCAGATGAAGCAAAGGGAAAGCTTCAGGAGACAACTATTCATTTGAGGATTGAAAATCAGGGAGATAAAATGAACTGTGAAAATGGCGCAACTGAAGGCACATATCTAGCAGAAAAGTTCCACAAATTGAGGAATCTTGATTTTAATCACACCACAAGTGCAAACCAGAGTCACAGAAACATGCATGTGAAAGAAGTGTCGAAACAAAGCATATACCAATTTCCTTTGAAGAAAAAGAAGAAATACACATTGCAGCCTGGTTTTGGTTTCAGTGGGGATCCCATCATTACAACTCATGCAAGCAAGTTAATGCTGTTGAAATCAACTTCACACCATCTAGAATATTACATACTAGCAAGTTTGTCTCCTTCCTCATCAAAAGTTAAGTTGAAGGCATATGCTGATCGAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

322

Amino Acids

36.46

Weight (kDa)

9.42

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	34
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	52, 226, 467
AclWI	GGATC	2 cut(s)	824, 837
AcuI	CTGAAG	2 cut(s)	560, 666
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	815
AgsI	TTSAA	7 cut(s)	255, 362, 464, 605, 781, 871, 943
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	4 cut(s)	71, 246, 539, 808
AluBI	AGCT	6 cut(s)	184, 384, 398, 476, 574, 962
AluI	AGCT	6 cut(s)	184, 384, 398, 476, 574, 962
Alw26I	GTCTC	3 cut(s)	18, 575, 921
AlwI	GGATC	2 cut(s)	824, 837
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	318, 354
ApeKI	GCWGC	4 cut(s)	80, 266, 395, 805
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	166, 424
AvaII	GGWCC	1 cut(s)	544
BamHI	GGATCC	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	4 cut(s)	67, 253, 407, 817
BccI	CCATC	2 cut(s)	842, 894
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	4 cut(s)	73, 248, 541, 810
BcoDI	GTCTC	3 cut(s)	18, 575, 921
BfaI	CTAG	5 cut(s)	348, 410, 659, 890, 905
BisI	GCNGC	4 cut(s)	81, 267, 396, 806
BlsI	GCNGC	4 cut(s)	82, 268, 397, 807
BmcAI	AGTACT	1 cut(s)	306
Bme1390I	CCNGG	4 cut(s)	73, 248, 541, 810
Bme18I	GGWCC	1 cut(s)	544
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	3 cut(s)	538, 545, 831
BmrFI	CCNGG	4 cut(s)	73, 248, 541, 810
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BoxI	GACNNNNGTC	2 cut(s)	30, 549
BpiI	GAAGAC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	321, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse1I	ACTGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	800
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	4 cut(s)	73, 248, 541, 810
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	321, 540
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	2 cut(s)	98, 486
BseNI	ACTGG	1 cut(s)	260
BseXI	GCAGC	4 cut(s)	67, 253, 407, 817
BsgI	GTGCAG	2 cut(s)	98, 414
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	320, 356
BshVI	ATCGAT	1 cut(s)	175
BslFI	GGGAC	2 cut(s)	25, 557
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmAI	GTCTC	3 cut(s)	18, 575, 921
BsmFI	GGGAC	2 cut(s)	25, 557
BsnI	GGCC	2 cut(s)	320, 356
Bsp143I	GATC	4 cut(s)	172, 176, 829, 955
BspACI	CCGC	3 cut(s)	52, 226, 467
BspANI	GGCC	2 cut(s)	320, 356
BspCNI	CTCAG	2 cut(s)	97, 485
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	965
BspLI	GGNNCC	3 cut(s)	538, 545, 831
BspPI	GGATC	2 cut(s)	824, 837
BsrBI	CCGCTC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	800
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	2 cut(s)	321, 540
BssMI	GATC	4 cut(s)	172, 176, 829, 955
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	4 cut(s)	73, 248, 541, 810
Bst4CI	ACNGT	4 cut(s)	39, 232, 516, 629
BstC8I	GCNNGC	1 cut(s)	853
BstDEI	CTNAG	2 cut(s)	84, 472
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	4 cut(s)	175, 179, 832, 958
BstMAI	GTCTC	3 cut(s)	18, 575, 921
BstMBI	GATC	4 cut(s)	172, 176, 829, 955
BstMWI	GCNNNNNNNGC	1 cut(s)	959
BstNI	CCWGG	4 cut(s)	73, 248, 541, 810
BstNSI	RCATGY	3 cut(s)	511, 736, 740
BstPAI	GACNNNNGTC	2 cut(s)	30, 549
BstSCI	CCNGG	4 cut(s)	71, 246, 539, 808
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	67, 253, 407, 817
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	320, 356
BsuTUI	ATCGAT	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	3 cut(s)	110, 267, 829
Cac8I	GCNNGC	1 cut(s)	853
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	965
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	544
ClaI	ATCGAT	1 cut(s)	175
CseI	GACGC	1 cut(s)	43
CsiI	ACCWGGT	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	305
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	6 cut(s)	95, 508, 733, 737, 848, 966
CviQI	GTAC	1 cut(s)	305
DdeI	CTNAG	2 cut(s)	84, 472
DpnI	GATC	4 cut(s)	174, 178, 831, 957
DpnII	GATC	4 cut(s)	172, 176, 829, 955
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	2 cut(s)	560, 666
EcoRII	CCWGG	4 cut(s)	71, 246, 539, 808
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	6 cut(s)	98, 511, 736, 740, 851, 969
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	2 cut(s)	25, 557
FatI	CATG	6 cut(s)	94, 507, 732, 736, 847, 965
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	949
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	81, 267, 396, 806
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	81, 267, 396, 806
FspBI	CTAG	5 cut(s)	348, 410, 659, 890, 905
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	4 cut(s)	81, 267, 396, 806
HaeIII	GGCC	2 cut(s)	320, 356
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	6 cut(s)	98, 511, 736, 740, 851, 969
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	2 cut(s)	372, 505
HindII	GTYRAC	2 cut(s)	372, 505
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	3 cut(s)	209, 685, 721
HphI	GGTGA	2 cut(s)	166, 424
Hpy166II	GTNNAC	4 cut(s)	35, 168, 372, 505
Hpy188I	TCNGA	3 cut(s)	484, 494, 521
Hpy188III	TCNNGA	8 cut(s)	65, 206, 272, 554, 578, 689, 890, 966
Hpy8I	GTNNAC	4 cut(s)	35, 168, 372, 505
HpyAV	CCTTC	4 cut(s)	145, 641, 930, 937
HpyCH4III	ACNGT	4 cut(s)	39, 232, 516, 629
HpyCH4V	TGCA	6 cut(s)	115, 395, 713, 736, 805, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	959
HpyF3I	CTNAG	2 cut(s)	84, 472
Hsp92II	CATG	6 cut(s)	98, 511, 736, 740, 851, 969
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	172, 176, 829, 955
Lsp1109I	GCAGC	4 cut(s)	67, 253, 407, 817
MabI	ACCWGGT	1 cut(s)	71
MaeI	CTAG	5 cut(s)	348, 410, 659, 890, 905
MaeIII	GTNAC	2 cut(s)	18, 722
MalI	GATC	4 cut(s)	174, 178, 831, 957
MbiI	CCGCTC	1 cut(s)	469
MboI	GATC	4 cut(s)	172, 176, 829, 955
MboII	GAAGA	8 cut(s)	53, 91, 160, 194, 299, 446, 793, 802
MflI	RGATCY	1 cut(s)	829
MluCI	AATT	3 cut(s)	362, 677, 770
MlyI	GAGTC	1 cut(s)	730
MnlI	CCTC	8 cut(s)	115, 310, 346, 437, 527, 591, 675, 934
Mph1103I	ATGCAT	1 cut(s)	738
MseI	TTAA	3 cut(s)	696, 860, 936
MslI	CAYNNNNRTG	1 cut(s)	737
MspR9I	CCNGG	4 cut(s)	73, 248, 541, 810
MvaI	CCWGG	4 cut(s)	73, 248, 541, 810
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	959
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	4 cut(s)	172, 176, 829, 955
NlaIII	CATG	6 cut(s)	98, 511, 736, 740, 851, 969
NlaIV	GGNNCC	3 cut(s)	538, 545, 831
NmuCI	GTSAC	1 cut(s)	722
NsiI	ATGCAT	1 cut(s)	738
NspI	RCATGY	3 cut(s)	511, 736, 740
PagI	TCATGA	1 cut(s)	965
PceI	AGGCCT	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	209, 685
PkrI	GCNGC	4 cut(s)	82, 268, 397, 807
PleI	GAGTC	1 cut(s)	729
PpsI	GAGTC	1 cut(s)	729
PshAI	GACNNNNGTC	2 cut(s)	30, 549
Psp6I	CCWGG	4 cut(s)	71, 246, 539, 808
PspGI	CCWGG	4 cut(s)	71, 246, 539, 808
PspN4I	GGNNCC	3 cut(s)	538, 545, 831
PspPI	GGNCC	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	829
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	737
SaqAI	TTAA	3 cut(s)	696, 860, 936
SatI	GCNGC	4 cut(s)	81, 267, 396, 806
Sau3AI	GATC	4 cut(s)	172, 176, 829, 955
Sau96I	GGNCC	1 cut(s)	544
ScaI	AGTACT	1 cut(s)	306
SchI	GAGTC	1 cut(s)	730
ScrFI	CCNGG	4 cut(s)	73, 248, 541, 810
SexAI	ACCWGGT	1 cut(s)	71
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	3 cut(s)	362, 677, 770
SseBI	AGGCCT	1 cut(s)	320
SsiI	CCGC	3 cut(s)	52, 226, 467
SspI	AATATT	1 cut(s)	896
SspMI	CTAG	5 cut(s)	348, 410, 659, 890, 905
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	4 cut(s)	71, 246, 539, 808
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	4 cut(s)	39, 232, 516, 629
TaqI	TCGA	4 cut(s)	175, 215, 752, 958
TasI	AATT	3 cut(s)	362, 677, 770
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	2 cut(s)	209, 685
Tru1I	TTAA	3 cut(s)	696, 860, 936
Tru9I	TTAA	3 cut(s)	696, 860, 936
TscAI	CASTG	3 cut(s)	117, 267, 829
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	4 cut(s)	80, 266, 395, 805
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	8 cut(s)	21, 201, 300, 417, 573, 581, 638, 954
TspRI	CASTG	3 cut(s)	117, 267, 829
VpaK11BI	GGWCC	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	889
XceI	RCATGY	3 cut(s)	511, 736, 740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	5 cut(s)	348, 410, 659, 890, 905
ZrmI	AGTACT	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.