Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005992

Physical Location & Seq

Genomic Coordinates Reverse (-)

2944676 .. 2946939

Gene Structure 2264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAATGTAAATAATGAAGAGGAAGAGCCTTTGGGATTTCGATCCACTCTGATCAAAATTCCAAGTTGTGCGACAGAGGTCAGCTCTGGAGTTTCCAAGAGAAAGGTGCTCTGTGCAAAATTTCTTACTGCTTTTCCATTGGGGTTTGCTTTGAGTGAATCAAGATGGTATGTTTCTGTTGATAAGATTCTCGATTTCTATTTAATTTTCCTCGAATGTTCTTTGTCTTCTCAGTTTCCTCAAATGTTCTTCGTCTTCTCAGTTTATGGGTTTACTTCCTATGCAATAATATCTGTATATTTTGAGAACTTCACAATTGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox_KN POX

Protein Analysis

108

Amino Acids

12.35

Weight (kDa)

4.83

Isoelectric Point (pI)

62.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005992)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16400
fragaria_vesca	FvH4_2g09770 FvH4_2g09770 FvH4_2g09770
malus_domestica	MD05G1059800.v1.1 MD10G1068000.v1.1
prunus_persica	Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1 Prupe.8G089800_v2.0.a1
pyrus_communis	pycom05g05110 pycom05g05120 pycom10g05380
rosa_chinensis	RchiOBHm_Chr6g0266091 RchiOBHm_Chr6g0266111
rosa_laevigata	RLG00000014115
rosa_multiflora	Rmu_co8443717.1_g000001 Rmu_sc0004324.1_g000004
rosa_roxburghii	Rroxscaffold_174G00435200 Rroxscaffold_7G00201970
rosa_rugosa	Rorug06G0023900 Rorug06G0024000 Rorug06G0024100
rosa_samantha	Rh6AG144700 Rh6BG145100 Rh6CG141800 Rh6DG129400
rosa_wichuraiana	Rw6G012490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	57, 119, 321
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	36
ApoI	RAATTY	3 cut(s)	57, 119, 321
BbsI	GAAGAC	2 cut(s)	219, 247
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	159
BclI	TGATCA	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	219, 247
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	40
Bse8I	GATNNNNATC	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	245, 273
BsiHKAI	GWGCWC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	41, 51
BspCNI	CTCAG	2 cut(s)	244, 272
BspPI	GGATC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	18
BssMI	GATC	2 cut(s)	41, 51
Bst6I	CTCTTC	2 cut(s)	12, 18
BstDEI	CTNAG	2 cut(s)	231, 259
BstKTI	GATC	2 cut(s)	44, 54
BstMBI	GATC	2 cut(s)	41, 51
BstPAI	GACNNNNGTC	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	219, 247
CviJI	RGCY	2 cut(s)	28, 84
CviKI_1	RGCY	2 cut(s)	28, 84
DdeI	CTNAG	2 cut(s)	231, 259
DpnI	GATC	2 cut(s)	43, 53
DpnII	GATC	2 cut(s)	41, 51
Eam1104I	CTCTTC	2 cut(s)	12, 18
EarI	CTCTTC	2 cut(s)	12, 18
FaiI	YATR	4 cut(s)	171, 267, 282, 298
FbaI	TGATCA	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	108
HinfI	GANTC	2 cut(s)	158, 187
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	3 cut(s)	87, 162, 191
Hpy8I	GTNNAC	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	116, 284
HpyF3I	CTNAG	2 cut(s)	231, 259
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	41, 51
LguI	GCTCTTC	1 cut(s)	18
LpnPI	CCDG	1 cut(s)	72
MalI	GATC	2 cut(s)	43, 53
MboI	GATC	2 cut(s)	41, 51
MboII	GAAGA	5 cut(s)	29, 35, 219, 241, 247
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	57, 119, 204, 315, 321
MnlI	CCTC	4 cut(s)	13, 70, 221, 249
MseI	TTAA	1 cut(s)	203
MunI	CAATTG	1 cut(s)	315
NdeII	GATC	2 cut(s)	41, 51
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	158, 187
PshAI	GACNNNNGTC	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	41, 51
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	3 cut(s)	81, 86, 108
SgeI	CNNG	6 cut(s)	75, 99, 109, 174, 203, 224
Sse9I	AATT	5 cut(s)	57, 119, 204, 315, 321
TaqI	TCGA	3 cut(s)	40, 192, 213
TasI	AATT	5 cut(s)	57, 119, 204, 315, 321
TfiI	GAWTC	2 cut(s)	158, 187
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	17, 30
XapI	RAATTY	3 cut(s)	57, 119, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.