Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

25424547 .. 25437755

Gene Structure 13209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1163500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6060 bp

ATGCATGGATGTAGCTCAGGATCTGCTCTCCTAGTAAATGCAGAGGTTGATTCCATGGGTGGAGTGGTTGATGGTGGAGTTGGTATTGGTTTGAAAACCTCTCCACGCCGAGCAGCAATTGAGAAGGCCCAAGCAGAGCTTAGGCAGGAGTATGATGTGAGGGAGCAAAGAAGAAGGGAGCTAGAATTTCTTGAGAAAGGTGGCAATCCTTTGGACTTCAAGATTGGGAATGGAGCTTCTGTTAGTGTCCAGTCTACTTCACTCACTGATCAGCATCCAGAACAGTTTGTAACCAGTGAAGCAAAAGGTAGTTTTGCGTTGACTGCATCACCACATGGGGACTCTGTTGAAAGTAGTGGTCGACCAGAGGTTCCTACACTTTGTGAACCCAACAGCGCTGATAATCTTTTACTATTTGATGGCGGCAGTGATGCTCCTGAAGGGGAAATGAATTCTGTGCGTCTTAGTAGAAGGAATAGCAAAGGTCCATCAGAACAGTTTTCCCAGATGGATGGGACTCAAAACCCCAAGGAATCAGAAGACTCGACTATGTTCCGTCCATATGCTCGAAGGAACAGGTCTAGACCAAATCATGATGGCCCTCGATCAAATTCAGTAGATATACAGGGTCGTGGTGGTCAGGGATCTTCTTTACCTGCCCGTGGGGTGTCAAAGGATACTAAGAGGCCGATATCTGAAACAAACAACCAAAGGGACCAGAATATACCTTCTGGTGCTAACCTAAAGTATGCGAGTTCAAATGGTGATATTCTTCCCAAGATTGTAACTTCTGATAATCAGTTTGATATGGACTTGGAGGGGGTGCAAGCCCCTGACGTAATTACTGGTCCAATGAAAGATGGATCTCAAAACAAATTGGATGTTACACCTCTTAAAAGTTTGAGGGATAGCCAGCGTAGTGAACCATCTCAGATTGATGCTCAGGAAACCCCCATTGATGTTGTTTCTGAGAGATCTGATGTTGCAGAAAGGAAACTACTAGCATCATCCGTCCTTGAGTGTCCTCCCTGTGCTGCTACAACAAAGACTGAAAATGAAATTAGTTCGGTGCAGGTCAATGGGTTTAACAATTTAAATAGAGAGAGTAAAAGTGTGCCACATGAAGGTCAAATTAGCAGTGCAGCTCTAAGCACGAAGGGTTTAGATTCAGAGTCTTCTTGCACCCAAACTAGTGTAGGATTAGATGTAAATAATGATAGTGACTTGTGTACTACTACGAGGAACGCTGATAATAGAAATATTATCGAATCATCAGATGTGGATGGGACACGAAATCCAGCTGGTGGCTTAATGGTACAAGAAGATAAGGAAACCAAAGCTGTTGATAGTGGTGCTATTGTTAATGATAATCAGGCTTCTGTTTGTCAAAACAACTCTGGGAATAGGGAAATCAAAGTTGAGGGAGACACAAGTGAAAGTAGATCCGAGTTACATAATGAAGTTAAGTTCCATTCAAATGTTGAGGGAGAACAACCAAGTGACCCTTTTATGTCAGAAGCTGATAAGGTGGATGAAGCTTTGGATAATAGTTCCAACATCAACAGAGAGAACTTTTGCACTGGCATATCCCAGGGTCCTCAAGATTCATCAATGCATGAGGTTTCTGAGACTGCGTTTTCAGGGAGAGATACTGCTGCAGGTTCTGACTGTCAGACTCCTGGAGTTTACTTGAAAGTGATAGACAAGGCACATGAAGATTCTATTCTGGAAGAGGCTCGAGTTATAGAGGTTAAGCGTAAGAGGATTGCCGAATTATCAGTTCGTTCTTTACCATCGGAGAATCGCCGAAAGTCTCAGTGGGATTTTGTCCTGGAGGAAATGGCTTGGTTGGCAAATGATTTTGCGCAGGAGCGTCTTTGGAAGCTTACTACCGCTGCGCAAATATGTCATCGTGCTGCTTTTGCTTCTCGGTTGAGAATTGAATCCCAACATCATCATTGGGAGCTAACAAAAGTGGCTCATGACCTGGCAAAGGCTGTCAACCAATTTTGGGTTTCAGCTGAGACCCTTCTGAAGGGTGATGATTCAAGCTCTTGTCAAAAGGACTGTAACTACAATTTGGTTGAATCAATGAGGATTGAAAGGAACGAAACTTCCAAAGACAAGAATGGGGAACCTAATATGGAGCCAATCAAATATTTGGAGCCACAGCATCCCCGAAAAGATCTTTCACTTTCAGTGCAGGGATATGCAGTGAGATTTTTGAAGTATAACAACTCTCTGGGTCCTGGCCTTCAAGCTCCTACTCCTGAGAGAATTTCTGATTTAGGCATTACAGAAATGTCGTGGGAGGATCATCTTACAGAGGAAAACCTCTTTTATGCAGTTCCCTCTGGTGCAATGGAAACCTATAGAAAATCAATTGAATCTCATTTGGTTCAGTTTGAGAGAACCGTCAGTAGCATGCAAGAGGAGGTCGAGACATCTATGTATGATGCAGGAGCGGAGTTTGGTTTTCAAGAGACTGCATATGATGAGGATGAAGGAGAAACAAGCACCTATTATTTGCCTGGAGCATTTGAAGGTAGCAGGTCATTAAAATCTAACCAGAAGAAACAAAGGAACTTGAAGTTACATGCTTCTAGGTCATATGAAGGAGCTGATCTGCCTTACGGGAACTGCACGACTGCAACTCAGCAGTCCATGTCGATGGGGAAAAGGCCTGCTAGTCTCAATGTTGGTTCAATTCCAACAAAACGCACACGCACTGCTTCCAGGCAGAGGGTCGTTAGTCCATTTGGTGCTGGGCCTGCTGGGAATGTTCAGGCCCCGAATAGGACTGATGCTTCAAGTGGTGATACTAATTCTTTTCAGGATGATCAGAGTACTTTACATGGCGGATCTCAGTTCCAGAAAAGTATGGAGGTTGAGTCTGTTGGGGACTTTGAGAAGCAGTTACCATATGACTATGCAGAAACATCAATGAAGCCTAAAAAGAAGAAGGCCAAACATCTGGGTTCTACCTATGATCCAGGATGGCAAATGGATTCTGCTATCCTGAACGAACAGAGGGATCATTCCAAAAAGGGATTGGAGGGTCATCATTTTGAGTCCAATGGAACAATTGGTTTATATGGGCAACATACAGCCAAGAAGCCAAAGATATTAAAGCAATCTCTAGATAATACTTATGACAGTATTACTCCAATGCCTGGGTCCAATCCTTCTCCAGTGGCATCCCAAATGAGTAATATGTCCAATACCAGTAAATTTATTAAGTTGATTGGTGGTCGAGATAGGGGACGGAAAACTAAATCACTAAAGATGTCTGCTGGGCAGCCAGGTTCTGGAGGTCCATGGTCCCTTTTTGAAGATCAGGCACTTGTTGTTCTTGTACATGATATGGGCCCAAATTGGGAACTCATAAGCGATGCAATCAACAGCACACTGCACTTGAAGTGTATTTTTCGCAAGCCTAAAGAGTGCAAGGAGCGTCACAAAATATTAATGGATATGAATTCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGATCTTCTCAGCCTTATCCATCTACAATACCAGGCATTCCAAAGGGCAGTGCCAGGCAATTATTTCAACGCTTGCAAGAGCCCATGGAAGAGGATGTTCTCAAGTCTCATTTTGAGAAAATAATTAAGATTGGTCAGAGGCATCATTACCGGAGGAGTCAGAATGATAACCAGGATCTGAAACAAGTAACGACTGTCCACAATTCTCATGTTATGGCCCTTTCCCAAGTCTGTCCAAATAACTTGAATGGAGGTGTTCTAACTCCCCTGGATCTGTGTGATACCACTTCATCAAGCTCGGATGTCCTTGGGTATCAAGGCTCTCATTCTAGTGGTTTAGCAATGTCAAATCAGGGTGGGATGGCATCACTACTTCCTTCTGGGGCAAATGTCTCAATACAGGGATCTTCTGGTATGGTTCTTGGAAGCAACTTGCCATCCCCGTCTGGTTCACTCAGTGCCAATGTCAGAGATGGTAGATATGGTAGTCCAAGAACATCTTCATTGCCAGTCGACGAGCAGCAAAAAATGCAGCACTACAATCAAATGTTGTCTGGTAGAAACATTCAGCAGTCTGGCTTGTCTGTGCCTGGAGCTCTTCCAGGAACTGATCGTGGAGTTCGTATAGTTCCTGGTGGAAATGGTATGAGCATGATGTGTGGGATGAACAGAGGCATGCCAACTTCAAGGCCAGGGTTTCAGGGGATGACTTCACCATCTATGCTAAATTCTGGGAGTATGCTTTCATCCAGTATGGTGGGGATACCAAGCCCTGTAAATATGCACTCTGGAGCTGGTTCTGGTCAGGGAAACTTGATGATAAGACCCCGTGATGCTTTGCATATGATGCGGCCTGGCCATAATCCGGAGCATCAAAGGCAACTTATGGTTCCAGAACTTCAAATGCAGGTCACGCAAGGGAATGGCCAAGGTGTTACTCCATTCAATATGCTGAGTTCTGGTTTTCCTAATCAGACAACTCCGCCATCTGCTCAAACATATCCAGGCCATACTCACCAGCAGCATCAGATATCCCCACAACAGTCCCATGCACTCAGCAACCCTCATAACCCTCATCTTCAAGGCCCGAATCATGCTACGGGGCCGCAGCAGCAAGCCTATGCCATCCGTGTTGCAAAAGAAAGGCTGCAACAGCGGTATTTGCATCAACAGCAACAGTTTTCTGCATCTAATTCTTTGGTGCCACACGTCCAGACGCAGGCTCAACTTCCCATGTCATCAACTTTGCAAAATAGTTCCCAACTTCAGTCACAAACTTCTCCTCACCCGGTACCTATGTCCCCTATGACACCATCTTCCCCAAGGACTCCCATGTCATCCCAGCACCAGCAGAAACATCATCTGCCATCCCACGGCCTTAGCCGGAATCCTGGTGCTAGTGGGATGGCCAATCAGATGGGGAAGCAACGACAAAGACAACCACAGCAGCACCATCTTCAACAATCTGGTAGACACCACCCTCAACAACGGCAACTTACGCAGTCTCAGCAGCAGGCTAAACTTTCAAAGGGAATGGGAAGAGGCAATTCAATGGTGCATCAGAACCTCTCCATTGATCCTATTGATCCTTCTCAACTTAATGGGCTTATGCCTCCAGGAAGCCAAGCTCTTGAGAAAGGAGAACAAATCATGCAGTTGATGCAAGGTCAAGGTGCATATTCTGGGTCTGGCCTTAATCCAGTAACATCGAAACCATTGGTCCCCCAATCAGCAAACCATTCTCAGTTGCAGCAAAAGTTACTTTCTAGTGCACCAACCCCTCCATCAAACCAACTCCAGCAAATGCCTTCTCATTCTGATAATATCACTCAAGGCCAGGTTCCACCAGTTTCTTCTAGTCATATGATATCTGCTTCACATCAAACTGGCTCTCCATCAGGTATGGCTTCCAACCACCAGCAAGTGCAGCCGCAGTCACAGCCACTGCCACAGCAACAACAAAAGCAAGCTAATCAAACTCAGCCTTATGTTCAGAGAGTTGTGCAGCACAATTGCCAAGTGAACTCGGAGATTCCAAATAAGTCTCAAAATGATCCAACTCAAGCTGATGAGCAGCCTGTAAATGGTGCTTCGCAGGTGGGTGTGAGCATGGTGATTCCTCAGTCCTGTACTGATTCATCTAGTGTAGTGCCATCATCAGAAGCAGTTTATGATGCTAACATGCCGAATTCAACCGCTCAAGTGGGTCCCATTGGGAGCCCTGCACAAACTAATACTTCTGGGAATGTGCCTGGGCCACCTATCAGTCAAGGGTTAGGCCCAAGAAAGTTATCTGGTAACTTGCTCTCTCATGGGCATAATGTTGGAGCACAGTGGCAGCAGCAGCAGCAGCTACTGCAGCGGTCTCCTTCACTGCCGTCCCCATCCCAACAACAGTACCAGCAACAAGAACAACAGCAGCAGCAGGAACAAGAGCCACCCCAACATCAACTGACTCTGCAACAGCAGTCTCAGCAGCAAATGCAGCATCTGCAAGCAGGGCAAGGAAGTTTGTATATGATGTCTGGTAATTCAACACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

2020

Amino Acids

219.75

Weight (kDa)

6.26

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSA	PF07529	600 - 635	6.8e-07	HSA domain
Myb_DNA-bind_6	PF13921	1107 - 1155	3.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5599
AasI	GACNNNNNNGTC	1 cut(s)	4846
Acc16I	TGCGCA	2 cut(s)	1866, 1899
Acc36I	ACCTGC	6 cut(s)	664, 1063, 1649, 2541, 4411, 5599
Acc65I	GGTACC	1 cut(s)	4804
AccB1I	GGYRCC	2 cut(s)	4714, 4804
AccB7I	CCANNNNNTGG	3 cut(s)	1304, 3173, 3308
AccBSI	CCGCTC	2 cut(s)	2465, 5711
AccI	GTMKAC	4 cut(s)	254, 361, 4026, 4984
AccIII	TCCGGA	1 cut(s)	4378
AcoI	YGGCCR	3 cut(s)	4369, 4438, 4920
AcsI	RAATTY	8 cut(s)	185, 451, 610, 2277, 3230, 3478, 4240, 5701
AcuI	CTGAAG	4 cut(s)	459, 2054, 3525, 4763
AdeI	CACNNNGTG	2 cut(s)	383, 3971
AfaI	GTAC	7 cut(s)	1231, 1317, 2848, 3357, 4806, 5644, 5912
AfeI	AGCGCT	1 cut(s)	397
AflIII	ACRYGT	1 cut(s)	4720
AhlI	ACTAGT	1 cut(s)	1190
AjiI	CACGTC	1 cut(s)	4723
AjuI	GAANNNNNNNTTGG	2 cut(s)	3997, 4029
AloI	GAACNNNNNNTCC	2 cut(s)	2099, 2131
Alw21I	GWGCWC	3 cut(s)	4111, 5287, 5845
Alw44I	GTGCAC	1 cut(s)	5283
AlwNI	CAGNNNCTG	9 cut(s)	23, 1520, 1664, 3308, 3691, 4121, 5458, 5869, 6004
Ama87I	CYCGRG	1 cut(s)	1737
Aor13HI	TCCGGA	1 cut(s)	4378
Aor51HI	AGCGCT	1 cut(s)	397
ApaI	GGGCCC	1 cut(s)	3371
ApaLI	GTGCAC	1 cut(s)	5283
ApoI	RAATTY	8 cut(s)	185, 451, 610, 2277, 3230, 3478, 4240, 5701
AseI	ATTAAT	1 cut(s)	3467
Asp700I	GAANNNNTTC	1 cut(s)	4012
Asp718I	GGTACC	1 cut(s)	4804
AspLEI	GCGC	3 cut(s)	398, 1867, 1900
AsuC2I	CCSGG	1 cut(s)	4802
AsuHPI	GGTGA	9 cut(s)	321, 776, 2051, 2828, 3497, 4218, 4520, 4790, 5638
AvaI	CYCGRG	1 cut(s)	1737
BaeGI	GKGCMC	2 cut(s)	3371, 5287
BaeI	ACNNNNGTAYC	4 cut(s)	4796, 4829, 5894, 5927
BalI	TGGCCA	3 cut(s)	4371, 4440, 4922
BanI	GGYRCC	2 cut(s)	4714, 4804
BanII	GRGCYC	4 cut(s)	3371, 3597, 4111, 5735
BbsI	GAAGAC	2 cut(s)	546, 1167
Bbv12I	GWGCWC	3 cut(s)	4111, 5287, 5845
BceAI	ACGGC	3 cut(s)	4903, 5018, 5875
BciVI	GTATCC	2 cut(s)	670, 4269
BclI	TGATCA	2 cut(s)	268, 2839
BcnI	CCSGG	1 cut(s)	4802
BcuI	ACTAGT	1 cut(s)	1190
BfmI	CTRYAG	3 cut(s)	1656, 2371, 5870
BfoI	RGCGCY	1 cut(s)	399
BfuAI	ACCTGC	6 cut(s)	664, 1063, 1649, 2541, 4411, 5599
BfuI	GTATCC	2 cut(s)	670, 4269
BglII	AGATCT	2 cut(s)	974, 2185
BmcAI	AGTACT	1 cut(s)	2848
BmeT110I	CYCGRG	1 cut(s)	1737
BmgBI	CACGTC	1 cut(s)	4723
BpiI	GAAGAC	2 cut(s)	546, 1167
BpmI	CTGGAG	9 cut(s)	1701, 1853, 2553, 3174, 3330, 4125, 4323, 5112, 5294
Bpu10I	CCTNAGC	4 cut(s)	16, 140, 942, 4892
BpuEI	CTTGAG	8 cut(s)	212, 1037, 1584, 3599, 5165, 5328, 5559, 5697
BpuMI	CCSGG	1 cut(s)	4802
BsaBI	GATNNNNATC	1 cut(s)	273
BsaI	GGTCTC	2 cut(s)	2018, 5883
BsaWI	WCCGGW	2 cut(s)	3663, 4378
BsaXI	ACNNNNNCTCC	6 cut(s)	225, 255, 2876, 2906, 5389, 5419
Bse3DI	GCAATG	3 cut(s)	2367, 3861, 4016
Bse8I	GATNNNNATC	1 cut(s)	273
BseAI	TCCGGA	1 cut(s)	4378
BseJI	GATNNNNATC	1 cut(s)	273
BseMI	GCAATG	3 cut(s)	2367, 3861, 4016
BseRI	GAGGAG	3 cut(s)	2447, 3682, 4785
BseSI	GKGCMC	2 cut(s)	3371, 5287
BseYI	CCCAGC	4 cut(s)	2765, 2774, 3293, 4854
BsgI	GTGCAG	8 cut(s)	1091, 1161, 2222, 2626, 3395, 5459, 5537, 5721
BshNI	GGYRCC	2 cut(s)	4714, 4804
BsiHKAI	GWGCWC	3 cut(s)	4111, 5287, 5845
BsiHKCI	CYCGRG	1 cut(s)	1737
BsiSI	CCGG	4 cut(s)	3664, 4379, 4802, 4897
BsmI	GAATGC	1 cut(s)	3549
Bso31I	GGTCTC	2 cut(s)	2018, 5883
BsoBI	CYCGRG	1 cut(s)	1737
Bsp120I	GGGCCC	1 cut(s)	3367
Bsp1286I	GDGCHC	6 cut(s)	3371, 3597, 4111, 5287, 5735, 5845
Bsp13I	TCCGGA	1 cut(s)	4378
Bsp1407I	TGTACA	1 cut(s)	3355
Bsp19I	CCATGG	3 cut(s)	54, 3317, 3597
BspEI	TCCGGA	1 cut(s)	4378
BspHI	TCATGA	2 cut(s)	592, 1981
BspMAI	CTGCAG	2 cut(s)	1660, 5874
BspMI	ACCTGC	6 cut(s)	664, 1063, 1649, 2541, 4411, 5599
BspQI	GCTCTTC	1 cut(s)	4116
BspT107I	GGYRCC	2 cut(s)	4714, 4804
BspTNI	GGTCTC	2 cut(s)	2018, 5883
BsrBI	CCGCTC	2 cut(s)	2465, 5711
BsrDI	GCAATG	3 cut(s)	2367, 3861, 4016
BsrGI	TGTACA	1 cut(s)	3355
BssT1I	CCWWGG	7 cut(s)	54, 528, 3317, 3597, 3820, 4441, 4835
Bst6I	CTCTTC	4 cut(s)	1725, 3597, 4116, 5047
BstAPI	GCANNNNNTGC	6 cut(s)	4042, 4360, 5173, 5869, 5995, 6004
BstAUI	TGTACA	1 cut(s)	3355
BstDSI	CCRYGG	5 cut(s)	54, 661, 3317, 3597, 4885
BstENI	CCTNNNNNAGG	2 cut(s)	1991, 2033
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	3 cut(s)	398, 1867, 1900
BstNSI	RCATGY	4 cut(s)	2428, 2600, 4192, 5698
BstSFI	CTRYAG	3 cut(s)	1656, 2371, 5870
BstSLI	GKGCMC	2 cut(s)	3371, 5287
BstV2I	GAAGAC	2 cut(s)	546, 1167
BstXI	CCANNNNNNTGG	5 cut(s)	512, 2671, 2974, 4270, 4930
BsuI	GTATCC	2 cut(s)	670, 4269
BtgI	CCRYGG	5 cut(s)	54, 661, 3317, 3597, 4885
BtgZI	GCGATG	1 cut(s)	3405
BtrI	CACGTC	1 cut(s)	4723
BtsI	GCAGTG	8 cut(s)	433, 1144, 2220, 2727, 3407, 3568, 5456, 5885
BveI	ACCTGC	6 cut(s)	664, 1063, 1649, 2541, 4411, 5599
CaiI	CAGNNNCTG	9 cut(s)	23, 1520, 1664, 3308, 3691, 4121, 5458, 5869, 6004
CciI	TCATGA	2 cut(s)	592, 1981
CfoI	GCGC	3 cut(s)	398, 1867, 1900
CseI	GACGC	4 cut(s)	449, 1862, 3443, 4738
Csp6I	GTAC	7 cut(s)	1230, 1316, 2847, 3356, 4805, 5643, 5911
CviQI	GTAC	7 cut(s)	1230, 1316, 2847, 3356, 4805, 5643, 5911
DraI	TTTAAA	1 cut(s)	1095
DraIII	CACNNNGTG	2 cut(s)	383, 3971
DrdI	GACNNNNNNGTC	1 cut(s)	4846
DseDI	GACNNNNNNGTC	1 cut(s)	4846
EaeI	YGGCCR	3 cut(s)	4369, 4438, 4920
Eam1104I	CTCTTC	4 cut(s)	1725, 3597, 4116, 5047
EarI	CTCTTC	4 cut(s)	1725, 3597, 4116, 5047
EciI	GGCGGA	2 cut(s)	2874, 4485
Ecl136II	GAGCTC	1 cut(s)	4109
Eco130I	CCWWGG	7 cut(s)	54, 528, 3317, 3597, 3820, 4441, 4835
Eco147I	AGGCCT	1 cut(s)	2683
Eco24I	GRGCYC	4 cut(s)	3371, 3597, 4111, 5735
Eco31I	GGTCTC	2 cut(s)	2018, 5883
Eco32I	GATATC	3 cut(s)	693, 4545, 5382
Eco47III	AGCGCT	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	4109
Eco57I	CTGAAG	4 cut(s)	459, 2054, 3525, 4763
Eco88I	CYCGRG	1 cut(s)	1737
EcoICRI	GAGCTC	1 cut(s)	4109
EcoNI	CCTNNNNNAGG	2 cut(s)	1991, 2033
EcoO109I	RGGNCCY	4 cut(s)	1595, 2246, 2788, 5720
EcoRI	GAATTC	3 cut(s)	451, 3478, 5701
EcoRV	GATATC	3 cut(s)	693, 4545, 5382
EcoT14I	CCWWGG	7 cut(s)	54, 528, 3317, 3597, 3820, 4441, 4835
EcoT22I	ATGCAT	2 cut(s)	6, 1617
EcoT38I	GRGCYC	4 cut(s)	3371, 3597, 4111, 5735
ErhI	CCWWGG	7 cut(s)	54, 528, 3317, 3597, 3820, 4441, 4835
FalI	AAGNNNNNCTT	6 cut(s)	123, 155, 1489, 1521, 3997, 4029
FauNDI	CATATG	6 cut(s)	562, 2491, 2611, 2923, 4356, 5376
FbaI	TGATCA	2 cut(s)	268, 2839
FblI	GTMKAC	4 cut(s)	254, 361, 4026, 4984
FriOI	GRGCYC	4 cut(s)	3371, 3597, 4111, 5735
FspI	TGCGCA	2 cut(s)	1866, 1899
GlaI	GCGC	3 cut(s)	397, 1866, 1899
GsaI	CCCAGC	4 cut(s)	2769, 2778, 3297, 4858
GsuI	CTGGAG	9 cut(s)	1701, 1853, 2553, 3174, 3330, 4125, 4323, 5112, 5294
HaeII	RGCGCY	1 cut(s)	399
HapII	CCGG	4 cut(s)	3664, 4379, 4802, 4897
HgaI	GACGC	4 cut(s)	449, 1862, 3443, 4738
HhaI	GCGC	3 cut(s)	398, 1867, 1900
Hin6I	GCGC	3 cut(s)	396, 1865, 1898
HinP1I	GCGC	3 cut(s)	396, 1865, 1898
HincII	GTYRAC	4 cut(s)	321, 362, 2002, 4027
HindII	GTYRAC	4 cut(s)	321, 362, 2002, 4027
HindIII	AAGCTT	2 cut(s)	1536, 1883
HpaII	CCGG	4 cut(s)	3664, 4379, 4802, 4897
HphI	GGTGA	9 cut(s)	321, 776, 2051, 2828, 3497, 4218, 4520, 4790, 5638
Hpy99I	CGWCG	1 cut(s)	4031
HpyCH4IV	ACGT	2 cut(s)	837, 4722
HpySE526I	ACGT	2 cut(s)	837, 4722
HspAI	GCGC	3 cut(s)	396, 1865, 1898
KflI	GGGWCCC	1 cut(s)	5720
Kpn2I	TCCGGA	1 cut(s)	4378
KpnI	GGTACC	1 cut(s)	4808
Ksp22I	TGATCA	2 cut(s)	268, 2839
LguI	GCTCTTC	1 cut(s)	4116
MaeII	ACGT	2 cut(s)	837, 4722
MbiI	CCGCTC	2 cut(s)	2465, 5711
MfeI	CAATTG	4 cut(s)	117, 2382, 3084, 5524
MhlI	GDGCHC	6 cut(s)	3371, 3597, 4111, 5287, 5735, 5845
MlsI	TGGCCA	3 cut(s)	4371, 4440, 4922
MluNI	TGGCCA	3 cut(s)	4371, 4440, 4922
MmeI	TCCRAC	5 cut(s)	1578, 2735, 5448, 5594, 5818
Mox20I	TGGCCA	3 cut(s)	4371, 4440, 4922
Mph1103I	ATGCAT	2 cut(s)	6, 1617
MroI	TCCGGA	1 cut(s)	4378
MroXI	GAANNNNTTC	1 cut(s)	4012
MscI	TGGCCA	3 cut(s)	4371, 4440, 4922
MslI	CAYNNNNRTG	4 cut(s)	1476, 2669, 3843, 6055
Msp20I	TGGCCA	3 cut(s)	4371, 4440, 4922
MspA1I	CMGCKG	5 cut(s)	1301, 1895, 2021, 4669, 5875
MspI	CCGG	4 cut(s)	3664, 4379, 4802, 4897
MunI	CAATTG	4 cut(s)	117, 2382, 3084, 5524
Mva1269I	GAATGC	1 cut(s)	3549
NciI	CCSGG	1 cut(s)	4802
NcoI	CCATGG	3 cut(s)	54, 3317, 3597
NdeI	CATATG	6 cut(s)	562, 2491, 2611, 2923, 4356, 5376
NmeAIII	GCCGAG	1 cut(s)	134
NmuCI	GTSAC	6 cut(s)	1220, 1499, 3455, 4423, 4782, 5448
NsbI	TGCGCA	2 cut(s)	1866, 1899
NsiI	ATGCAT	2 cut(s)	6, 1617
NspI	RCATGY	4 cut(s)	2428, 2600, 4192, 5698
PaeI	GCATGC	2 cut(s)	2428, 4192
PaeR7I	CTCGAG	1 cut(s)	1737
PagI	TCATGA	2 cut(s)	592, 1981
PaqCI	CACCTGC	1 cut(s)	5599
PasI	CCCWGGG	1 cut(s)	1591
PceI	AGGCCT	1 cut(s)	2683
PciSI	GCTCTTC	1 cut(s)	4116
PcsI	WCGNNNNNNNCGW	1 cut(s)	4132
PctI	GAATGC	1 cut(s)	3549
PdmI	GAANNNNTTC	1 cut(s)	4012
PflMI	CCANNNNNTGG	3 cut(s)	1304, 3173, 3308
PfoI	TCCNGGA	5 cut(s)	1678, 1830, 2992, 4114, 5128
PpuMI	RGGWCCY	3 cut(s)	1595, 2246, 5720
PshBI	ATTAAT	1 cut(s)	3467
Psp124BI	GAGCTC	1 cut(s)	4111
Psp5II	RGGWCCY	3 cut(s)	1595, 2246, 5720
PspFI	CCCAGC	4 cut(s)	2765, 2774, 3293, 4854
PspOMI	GGGCCC	1 cut(s)	3367
PspPPI	RGGWCCY	3 cut(s)	1595, 2246, 5720
PspXI	VCTCGAGB	1 cut(s)	1737
PstI	CTGCAG	2 cut(s)	1660, 5874
PstNI	CAGNNNCTG	9 cut(s)	23, 1520, 1664, 3308, 3691, 4121, 5458, 5869, 6004
PvuII	CAGCTG	2 cut(s)	1301, 2021
RsaI	GTAC	7 cut(s)	1231, 1317, 2848, 3357, 4806, 5644, 5912
RsaNI	GTAC	7 cut(s)	1230, 1316, 2847, 3356, 4805, 5643, 5911
RseI	CAYNNNNRTG	4 cut(s)	1476, 2669, 3843, 6055
SacI	GAGCTC	1 cut(s)	4111
SalI	GTCGAC	2 cut(s)	360, 4025
SapI	GCTCTTC	1 cut(s)	4116
ScaI	AGTACT	1 cut(s)	2848
SduI	GDGCHC	6 cut(s)	3371, 3597, 4111, 5287, 5735, 5845
SfcI	CTRYAG	3 cut(s)	1656, 2371, 5870
Sfr274I	CTCGAG	1 cut(s)	1737
SlaI	CTCGAG	1 cut(s)	1737
SmiI	ATTTAAAT	1 cut(s)	1095
SmiMI	CAYNNNNRTG	4 cut(s)	1476, 2669, 3843, 6055
SmlI	CTYRAG	9 cut(s)	191, 1016, 1599, 1737, 3614, 5144, 5343, 5574, 5712
SmoI	CTYRAG	9 cut(s)	191, 1016, 1599, 1737, 3614, 5144, 5343, 5574, 5712
SpeI	ACTAGT	1 cut(s)	1190
SphI	GCATGC	2 cut(s)	2428, 4192
SseBI	AGGCCT	1 cut(s)	2683
SspI	AATATT	3 cut(s)	1261, 2159, 3465
SstI	GAGCTC	1 cut(s)	4111
StuI	AGGCCT	1 cut(s)	2683
StyI	CCWWGG	7 cut(s)	54, 528, 3317, 3597, 3820, 4441, 4835
SwaI	ATTTAAAT	1 cut(s)	1095
TaiI	ACGT	2 cut(s)	840, 4725
TatI	WGTACW	4 cut(s)	1229, 2846, 3355, 5642
TauI	GCSGC	4 cut(s)	426, 4366, 4621, 5446
TseFI	GTSAC	6 cut(s)	1220, 1499, 3455, 4423, 4782, 5448
Tsp45I	GTSAC	6 cut(s)	1220, 1499, 3455, 4423, 4782, 5448
TspGWI	ACGGA	4 cut(s)	545, 1000, 3280, 4631
Van91I	CCANNNNNTGG	3 cut(s)	1304, 3173, 3308
VneI	GTGCAC	1 cut(s)	5283
VspI	ATTAAT	1 cut(s)	3467
XagI	CCTNNNNNAGG	2 cut(s)	1991, 2033
XapI	RAATTY	8 cut(s)	185, 451, 610, 2277, 3230, 3478, 4240, 5701
XbaI	TCTAGA	2 cut(s)	581, 3139
XceI	RCATGY	4 cut(s)	2428, 2600, 4192, 5698
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 3049
XhoI	CTCGAG	1 cut(s)	1737
XmiI	GTMKAC	4 cut(s)	254, 361, 4026, 4984
XmnI	GAANNNNTTC	1 cut(s)	4012
ZrmI	AGTACT	1 cut(s)	2848
Zsp2I	ATGCAT	2 cut(s)	6, 1617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.