Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

50040643 .. 50052404

Gene Structure 11762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG278300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6102 bp

ATGCATGGATGTGGCTCAGGATCTGCTCTCCTAGTAAATGCAGAGGTGGATTCCATGGGTGGAGTGGTTGACGGCGGAGTTGGTGTTGGTTTGAAAACATCTCCGCGCCGAGCAGCAATTGAGAAGGCTCAAGCAGAGCTTAGACAGGAATATGATGTGCGGGAGGAAAGGAGAAGGGAGCTAGAATTTCTTGAGAAAGGTGGCAATCCTTTGGACTTCAAATTTGGGAATGCAGCTTCTGTTAGTGTCCAGTCTACTTCCCTCACTGATCAGCATCCAGAACAGTTTGTGACCAGTGAAGCAAAAGGTAGTTTTGCATTGACTGCATCACCTCGTGGGGACTCTGTTGAAAGTAGTGGTCGACCAGAGGTTCCTACACTTTGTGAACCCAACAGTGCTGATAATCTCTTACTTTTTGATGGGGACAATGATACACCGGAAGGGGAAAGGAAATCTATGCATATTAGTAGAAGAAATAAAATTGCTCCATCAGAACAGTCTTCCCAGATGGATGGGACTCAAAATGCCAAGGAATCAGAAGACTCAGCGATTTTCCGTCCCTATGCTCGAAGGAACAGGTCCAGACCAAATCGTGATGGTACTCGTTCAAGTTCAACTGATGTACAGGGCCGTGGTGGTCAAGGGTCTTCATTACCTTCTCGCGGGACGTTAAAGAATCCCAAGGGACCGGTATTTGAAACAAACAACCAAAAGGACCAGAATATACCTTCGGTCACTAATCTAAAGTCTGTGAAGTCTAATGGTGATTTTGCTTCTAGGGTTGCAACTTCTGATAATCAGTTGGATATGGACTTTGATGGGGTGCAGGCTCCTGAAATATTTACTGGTCCAGCAAAAGATAGTCCTGAAAAAAAATTGGATGTTACAGCTACTGAAAGTTTGAAAGAGAGCCAACATAGTCAACCATCTCAGACTGATACTCAGGAAATTCCAATTGCTGCTGTTTCGGGGAGATCTGATGAGAGGGAGCCGTTAGCTTCGTCTGTTCTTGAATGTCTTCGTTGTGAAGCTACTACAAAGACCGAAATTGATATTAGTTCTGTCCAGGTGAATGGATTTAGTAATTTAAATAGAGAGAGTAAAAGTGTACCAAATGAAGGTCAAATTAGCAGTGCAGCGGGCACAAAGGGGTTAGATTCAGAATCTTCTTGTACCCAAACTAGTGTAGGATTAGATGTAAATAATGATACTGACGTATGTACTACAAGGAATGCTGATAATGCAAATATCATGGAAACATCAGATGTTGATGGGGCACAAAATCCAGCTGGTGATGAAATGTTACTAGAAAAGAAAGAAAGCAGAGCTGTTGACAGTAGTCCCATGATTAATGATCCTCATGCTTCTGATTTTCAGAACAATCGCTCAGGCAATACTGAAGTGAAAGTTGAGGAAGATATGAACGAAAGTAGATCTGAAGTGCATAATGAAGTAAAGCTTCATCCAAACACTGAGGGAGAGCAACAAAGTGGTTGTACTGTATCAGAAGCTGAAAAGAAACTGGATGATGTGGTGGATAATGGTTCCAACATCAAGAAAGAGAACTCTTCTGGCAGACCCCAGACTCCTCAGGATTTATCTATGTGTGAGCTTCCTGAAACCATTTTGCCAGGGATAGACTCTGCCAAGGGTTCAGACTGTCAGACTTCTGGTAGTCACTTTAAAGTGGTAGACAAGGCACATGAAGATTCTATTTTGGAAGAGGCTCGGATGATAGAGGCCAAGCGTAAGAGGATTGCAGAATTATCTGTTCGTTCTTTACCCTCGGAGAATCACCGAAAGTCTCAGTGGGATTTTGTGCTTGAGGAAATGTCGTGGTTGGCCAATGATTTTGCTCAGGAGCGCCTTTGGAAGCTAACTGCTGCTGCTCAAATATGCCATCGTGTTGCGTTTACATCACGGTTGAGAATTGAAGAGCAACAACAACAATGGGGGATTAAAAAAGTGGCTCGTACCCTGGCAAATGCTGTCAACCAATTTTGGCAATCAGCTGGGACCCTTTTGTATGCTGATGATTCAAGTGATTGTCACAACATCACCAAGAGCAATTTGAATTCGAGCAAAGAGCCTTGCAAAGAGTTGGAGCTACAATGGAGCAACAACTTTTCACTTTCTATGCAGCGGTATGCAGTGAGATTTTTGAAGTATAACAACTCTCTTGGTCCTCAACTTCAAGCACAAGCTCCTGCTACTCCTGAGAGATTGTCTGATGTAGGCATTACAGAAATGTCATGGGAGGACCATCTTACAGAAGAAAACCTCTTTTATGCAGTTCCATCTGGGGCACTGGAAACCTACAGAAGATCAATTGAATCTCATTTGGTTCAGTGTGAGAGAACTAGCAGTAGCATGCAAGAAGAGGTTGATACATCCATGTATGAGGCTGGAGCTGAGTTTGATAGTCGAGAGACTTCTGCATACGATGAGGATGAAGGAGAAGCAACATGCACCTATTATTTGCCTGGGGCCTTCGAAGGTAGCAAGTCATCAACATTTAATCAGAAGAAGCGGAAGTATTATAAGTCATATAATCCTAGGACACATGAAGCAGGAGCTGATTTTCCCTATGGACAAACAGCAAATCAACAGTTCATGTTGATGGGGAAAAGGCCTGCTAGTCTTAATGTTGGTTCAATCCCAACAAAACGCGTGCGCACTGCTTCGAGGCAGAGGGTTGTTAGTCCATTTGGTGCTGGAGCTACTGGGAATGTTCAGGCTCAAATTAAGACAGATGCTTCTAGTGGAGATACTAATTCTTTTCAGGATGATCAGAGTACCTTACCTGGCGGATCCCAGTTCCCTAGAAGTATGGAGGTGGAGTCTGTTCGTGATTTTGAAAAGCATCCACAATGTGACCATGCAGAAACATCAAAGCATAAAAAGAAGAAGAAGGCAAAACATCTGGGTCCCGCTTATGACCAAGTATGGCAGGTGGATTCACCTACTCATAATGAGCAGAGGGATCATTCAAAAAAGAGATTAGAAAGTCATCATTTTGAGTCCAATGGAACATTTGGTTTATATGGGCAACATAATGCAAAGAGGCTGAAGATATCAAAACAGTCTCTAGACAATACTTATGATGGTATAACTCCAATGACTGGGTCCATTCCTTCTCCAGTGGCGTCCCAAATGAGTAATATGACCAATCCGAGTAAATTGATGAAGTTGATCGGTGGTCGGGACAAGGGACGGAAAGCTAAATCAATGAAGATGCCTGTTGGGCAGCCAGGTTCTGGAAGTCCATGGTCACTATTCGAAGATCAGGCACTTGTTGTTCTTGTACATGATATGGGTCCAAATTGGGAACTCATAAGTGATGCTATCAACAGTACTCTGCACCTAAAGTGTATCTTCCGCAAGCCTAAGGAATGCAAGGAGCGTCACAAAATTTTAATGGATTTGAATACTGGTGATGGGGCTGACAGTGCTGAAGATTCAGGATCATCACAGCCTTATCCATCTACAATCCCTGGCATTCCAAAGGGAAGTGCCAGACAGTTATTTCAACGCTTGCAAGAGCCAATGGAAGAGGACACTCTCAAGTCTCATTTTGAAAGAATAATTAAGATTGGGCAGAAGCATCATTATAGGAGGAGTCAGAGTGATAACCAGGATCCAAAACAAGGAACGACAGTCCACAATTCTCATGTTATCGCTCTTTCCCAAGTATGTCCGAATAACCTGAATGGAGTTATTCTAACGCCTCTTGATCTCTGTGATGCCACATCATCAAGCCCAGATGTTCTTCCGACTGCATATCAAGGTTCTCACACTAGTGGCTTACCAATGGCAAATCAGGGTGCTATGGCGTCATTACTGCCCTCTGGGCCAAATGCCTCATTACAGGGAACTTCTGGTATGGTTCTTGGTAGCAACTTGTCATCACCATCTGGCCCGCTTAGTGCGACAGTCAGGGATGGTAGGTATGGTGGTCCAAGGGCATCTACTTTACCAGTTGAAGAGCAGCAAAGAATGCAACACTACAATCAAATGTTATCTGGTAGAAACATTCAGCAGTCCAGCTTGTCCGTACCTGGGGCTCTTCCAGGAGGTACTGATCGTGGTGTTCGAATGGTACCTGGTGCAAATGGTATGGGCATGATGTGTGGGATGAATAGAAGCACAATGTCAAGGCCAGGGTTTCAGGGAATGGCTTCTTCCTCGATGCTGAATACTGGGAGTATGCTTTCATCCAGTATGGTTGGAATACCAAGTCCTGTAAATATGCACTCTGGAGCTGGTTCTGGTCCAGGAAATTTGATGTTAAGACCTCGTGAGGGTCACATGATGCGGCCTGCCCATAATCCGGATCACCAAAGGCAACTTATGGCTCCAGAGCTTCAGATGCAGGTCACGCAAGGGAATGGCCAAGGTATTGCTCCGTTCAATGGGTTGAGTTCTGGCTTTCCTAGTCAGACAACTCCATCAGGTGCACAAATGTATCCAGGCCATCCCCAGCAGCAACATCAGTTATCCCCACAACAATCTCATGCAGTCGGCAGCCCTCATCACCCTCATCTTCAAGGCCCCAATCACGTGACAGGGTCGCAGCAGCAAGCCTATGCCATGCGCATGGCTAAAGTGCATCAACAGCGGTTTTTGCAGCAGCAGCAGCAGCAGTTTGCATCATCCAATTCTTTGGTGCCGCATGTCCAACCACAGGCCCAACTCCCCATTTCTTCAACTTTGCAAAATAGTTCCCAGATTCAGTCACAAAGTTCACCTCACCCAGCATCTATGTCCCCTAGTACACCTTCTTCCCCAATGACTCCGGTATCATCCCAACACCAGCAGAAACATCACCTGCCACCTCATGGGATGAGTCGGAATCCTGGTGCAAGCGGGTTGACTAATCAAATAGGGAAGCAACGACAAAGGCCACAACAACACCATCTTCAGCAATCTGGGAGGCACCACCCTCAGCAGCGGCCATTTGGGCAATCTCAGCAGCAGGCTAAACTTTCGAAGGGAATGGGAAGAGGGAATCCAATGGTGCATCAAAACCTTGCCATCGATCCTATAAACATCTCCATTGATCCATCTCATCTGAATGGGCTTTCGATGCCTCCGGGAAGTCAAGCTCTGGATAAAGGAGAACAGATCATGCAGTTAATGCAAGGTCAAGCTGCATATTCGGGGTCTGGCGTCAACCCGGTAACATCAAAACCATTGGTTCCTCAATCATCAAACAACTCTCCGATGCAGCAAAAGTTGCATTCTAGCTCAGCTCCCTCTTCGACGAAGCAACTCCAGCAAAAGCCATCTCATTCTGATAACAGCACTCAAGGCCAGGCACCAGCTGTTCCTTCTGGTCATGCAATATCAGCTTCACATCAATCTGTGTCTCCAGCAATTGTGTCTTCCAATCACCAGCAGGTGCAGCCACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGAAGCAAGCTAATCAGACTCAGCCATATGTTCAGAGAGTCCAGCAGAATCGTCAAGTGAGTTCGGAGCTTCCAAGCAAGCCTCCAAATGATTTAGCTTCAGCCGAAGAGCAGCCTGTGAATAGTACTTCTCTGATCGGTTCGAGCATGGCAATTCCTCAGTCCTCTATTGATTCATCTAATGTAGTACCGGTTTCTTCTGGCATTACTCAATGGAAATCATCAGAAGCAGTATATGATTCTAATCTGCCAAATTCAACAGCTCAAGAGGGTTCACTTGGGAGCCCATCACCAACAAATTCATCTGGGAATGAGCCAGTGCCCCCTTTTAGTCAAGGTTTAGGCCCAAGGCAGTTATCTGGTAACTTTGCCTCTCATGGACATATTGCTGGTGCGCAATGGCAGCAGAAGCAGCTACTGCAAAAGCCTCCTTCGCTACCACCCCTGTCCCAACAACTCTACGAGCAACAAGAGCAACAGCAGCAGCAGGAACAAGAATCACCCCAACATCAACTGCCTTTGCCACAGCAGTCTCAGCAACAAATGCAGCATCTGCCAGCAGGGCAAGGTGGTTTGTATATGATGCCTAGTAATTCAAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

2033

Amino Acids

221.56

Weight (kDa)

6.43

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	1090 - 1138	3.4e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2541
AarI	CACCTGC	3 cut(s)	2941, 4836, 5389
Acc16I	TGCGCA	3 cut(s)	2675, 4595, 5889
Acc36I	ACCTGC	4 cut(s)	2941, 4363, 4836, 5389
Acc65I	GGTACC	1 cut(s)	4099
AccB1I	GGYRCC	4 cut(s)	4099, 4666, 4935, 5317
AccB7I	CCANNNNNTGG	3 cut(s)	3122, 3257, 4838
AccI	GTMKAC	3 cut(s)	254, 361, 1692
AccII	CGCG	3 cut(s)	106, 663, 2670
AccIII	TCCGGA	1 cut(s)	4330
AcoI	YGGCCR	3 cut(s)	1842, 4390, 4952
AcsI	RAATTY	8 cut(s)	185, 221, 948, 2074, 3411, 4279, 5746, 5791
AcuI	CTGAAG	7 cut(s)	1419, 1458, 3089, 3474, 4349, 4904, 5577
AcvI	CACGTG	1 cut(s)	4561
AcyI	GRCGYC	3 cut(s)	3146, 3833, 5169
AdeI	CACNNNGTG	3 cut(s)	335, 383, 2873
AflIII	ACRYGT	1 cut(s)	2668
AgeI	ACCGGT	2 cut(s)	688, 5683
AhlI	ACTAGT	2 cut(s)	1181, 3797
AleI	CACNNNNGTG	1 cut(s)	3798
Alw21I	GWGCWC	1 cut(s)	4459
Alw26I	GTCTC	6 cut(s)	1809, 2423, 3090, 3573, 5373, 6030
Alw44I	GTGCAC	1 cut(s)	4455
AlwNI	CAGNNNCTG	8 cut(s)	23, 239, 893, 1511, 2576, 3257, 5911, 6046
Aor13HI	TCCGGA	1 cut(s)	4330
ApaLI	GTGCAC	1 cut(s)	4455
ApoI	RAATTY	8 cut(s)	185, 221, 948, 2074, 3411, 4279, 5746, 5791
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AseI	ATTAAT	1 cut(s)	1350
AsiGI	ACCGGT	2 cut(s)	688, 5683
Asp700I	GAANNNNTTC	2 cut(s)	1017, 4177
Asp718I	GGTACC	1 cut(s)	4099
AspA2I	CCTAGG	1 cut(s)	2555
AspLEI	GCGC	5 cut(s)	108, 1866, 2676, 4596, 5890
AsuC2I	CCSGG	2 cut(s)	5094, 5177
AsuII	TTCGAA	4 cut(s)	2493, 3279, 4093, 4988
AvrII	CCTAGG	1 cut(s)	2555
AxyI	CCTNAGG	2 cut(s)	1590, 3387
BaeGI	GKGCMC	5 cut(s)	1145, 1279, 2308, 4459, 5817
BaeI	ACNNNNGTAYC	6 cut(s)	1200, 1233, 4448, 4481, 4782, 4815
BalI	TGGCCA	2 cut(s)	1844, 4392
BamHI	GGATCC	2 cut(s)	2810, 3637
BanI	GGYRCC	4 cut(s)	4099, 4666, 4935, 5317
BanII	GRGCYC	2 cut(s)	4066, 5780
BarI	GAAGNNNNNNTAC	2 cut(s)	4765, 4797
BauI	CACGAG	2 cut(s)	333, 4296
BbrPI	CACGTG	1 cut(s)	4561
BbsI	GAAGAC	5 cut(s)	492, 546, 639, 1010, 5376
Bbv12I	GWGCWC	1 cut(s)	4459
BbvCI	CCTCAGC	1 cut(s)	4944
BceAI	ACGGC	3 cut(s)	88, 615, 976
BciVI	GTATCC	1 cut(s)	4476
BclI	TGATCA	2 cut(s)	268, 2788
BcnI	CCSGG	2 cut(s)	5094, 5177
BcoDI	GTCTC	6 cut(s)	1809, 2423, 3090, 3573, 5373, 6030
BcuI	ACTAGT	2 cut(s)	1181, 3797
BfmI	CTRYAG	1 cut(s)	2317
BfoI	RGCGCY	1 cut(s)	1867
BfuAI	ACCTGC	4 cut(s)	2941, 4363, 4836, 5389
BfuI	GTATCC	1 cut(s)	4476
BglI	GCCNNNNNGGC	4 cut(s)	3244, 3850, 4960, 6055
BglII	AGATCT	2 cut(s)	974, 1433
BlnI	CCTAGG	1 cut(s)	2555
BlpI	GCTNAGC	1 cut(s)	5248
BmcAI	AGTACT	2 cut(s)	3355, 5620
BmrI	ACTGGG	4 cut(s)	2733, 2809, 3132, 4209
BmuI	ACTGGG	4 cut(s)	2733, 2809, 3132, 4209
BoxI	GACNNNNGTC	1 cut(s)	1338
BpiI	GAAGAC	5 cut(s)	492, 546, 639, 1010, 5376
BpmI	CTGGAG	7 cut(s)	2427, 2736, 3123, 4278, 4341, 5258, 5355
Bpu10I	CCTNAGC	4 cut(s)	16, 1387, 1857, 4944
Bpu1102I	GCTNAGC	1 cut(s)	5248
Bpu14I	TTCGAA	4 cut(s)	2493, 3279, 4093, 4988
BpuEI	CTTGAG	6 cut(s)	114, 212, 1844, 3548, 5292, 5742
BpuMI	CCSGG	2 cut(s)	5094, 5177
Bsa29I	ATCGAT	1 cut(s)	5037
BsaAI	YACGTR	1 cut(s)	4561
BsaBI	GATNNNNATC	2 cut(s)	273, 5736
BsaHI	GRCGYC	3 cut(s)	3146, 3833, 5169
BsaWI	WCCGGW	5 cut(s)	436, 688, 4330, 4795, 5683
BsaXI	ACNNNNNCTCC	6 cut(s)	69, 99, 2825, 2855, 3610, 3640
Bse118I	RCCGGY	2 cut(s)	688, 5683
Bse21I	CCTNAGG	2 cut(s)	1590, 3387
Bse3DI	GCAATG	1 cut(s)	5897
Bse8I	GATNNNNATC	2 cut(s)	273, 5736
BseAI	TCCGGA	1 cut(s)	4330
BseCI	ATCGAT	1 cut(s)	5037
BseJI	GATNNNNATC	2 cut(s)	273, 5736
BseMI	GCAATG	1 cut(s)	5897
BseRI	GAGGAG	2 cut(s)	1578, 3631
BseSI	GKGCMC	5 cut(s)	1145, 1279, 2308, 4459, 5817
BseYI	CCCAGC	3 cut(s)	2012, 4479, 4753
BsgI	GTGCAG	4 cut(s)	845, 1155, 3344, 5423
Bsh1236I	CGCG	3 cut(s)	106, 663, 2670
BshNI	GGYRCC	4 cut(s)	4099, 4666, 4935, 5317
BshTI	ACCGGT	2 cut(s)	688, 5683
BshVI	ATCGAT	1 cut(s)	5037
BsiHKAI	GWGCWC	1 cut(s)	4459
BsiSI	CCGG	7 cut(s)	437, 689, 4331, 4796, 5093, 5177, 5684
BsmAI	GTCTC	6 cut(s)	1809, 2423, 3090, 3573, 5373, 6030
BsmI	GAATGC	6 cut(s)	235, 1237, 3398, 3498, 4002, 5239
Bsp119I	TTCGAA	4 cut(s)	2493, 3279, 4093, 4988
Bsp1286I	GDGCHC	7 cut(s)	1145, 1279, 2308, 4066, 4459, 5780, 5817
Bsp13I	TCCGGA	1 cut(s)	4330
Bsp1407I	TGTACA	2 cut(s)	622, 3304
Bsp1720I	GCTNAGC	1 cut(s)	5248
Bsp19I	CCATGG	2 cut(s)	54, 3266
BspDI	ATCGAT	1 cut(s)	5037
BspEI	TCCGGA	1 cut(s)	4330
BspFNI	CGCG	3 cut(s)	106, 663, 2670
BspMI	ACCTGC	4 cut(s)	2941, 4363, 4836, 5389
BspQI	GCTCTTC	4 cut(s)	1929, 3978, 4071, 5595
BspT104I	TTCGAA	4 cut(s)	2493, 3279, 4093, 4988
BspT107I	GGYRCC	4 cut(s)	4099, 4666, 4935, 5317
BsrDI	GCAATG	1 cut(s)	5897
BsrFI	RCCGGY	2 cut(s)	688, 5683
BsrGI	TGTACA	2 cut(s)	622, 3304
BssAI	RCCGGY	2 cut(s)	688, 5683
BssNI	GRCGYC	3 cut(s)	3146, 3833, 5169
BssSI	CACGAG	2 cut(s)	333, 4296
BssT1I	CCWWGG	9 cut(s)	54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5840
Bst2BI	CACGAG	2 cut(s)	333, 4296
BstACI	GRCGYC	3 cut(s)	3146, 3833, 5169
BstAPI	GCANNNNNTGC	7 cut(s)	323, 3997, 5137, 5236, 5911, 6037, 6046
BstAUI	TGTACA	2 cut(s)	622, 3304
BstBAI	YACGTR	1 cut(s)	4561
BstBI	TTCGAA	4 cut(s)	2493, 3279, 4093, 4988
BstDSI	CCRYGG	3 cut(s)	54, 631, 3266
BstFNI	CGCG	3 cut(s)	106, 663, 2670
BstH2I	RGCGCY	1 cut(s)	1867
BstHHI	GCGC	5 cut(s)	108, 1866, 2676, 4596, 5890
BstMAI	GTCTC	6 cut(s)	1809, 2423, 3090, 3573, 5373, 6030
BstNSI	RCATGY	3 cut(s)	2374, 2469, 4676
BstPAI	GACNNNNGTC	1 cut(s)	1338
BstSFI	CTRYAG	1 cut(s)	2317
BstSLI	GKGCMC	5 cut(s)	1145, 1279, 2308, 4459, 5817
BstUI	CGCG	3 cut(s)	106, 663, 2670
BstV2I	GAAGAC	5 cut(s)	492, 546, 639, 1010, 5376
BstX2I	RGATCY	5 cut(s)	20, 974, 1433, 2810, 3637
BstXI	CCANNNNNNTGG	4 cut(s)	512, 1073, 4597, 4663
BstYI	RGATCY	5 cut(s)	20, 974, 1433, 2810, 3637
Bsu15I	ATCGAT	1 cut(s)	5037
Bsu36I	CCTNAGG	2 cut(s)	1590, 3387
BsuI	GTATCC	1 cut(s)	4476
BsuTUI	ATCGAT	1 cut(s)	5037
BtgI	CCRYGG	3 cut(s)	54, 631, 3266
BtsI	GCAGTG	3 cut(s)	1138, 2157, 2676
BveI	ACCTGC	4 cut(s)	2941, 4363, 4836, 5389
CaiI	CAGNNNCTG	8 cut(s)	23, 239, 893, 1511, 2576, 3257, 5911, 6046
CfoI	GCGC	5 cut(s)	108, 1866, 2676, 4596, 5890
Cfr10I	RCCGGY	2 cut(s)	688, 5683
ClaI	ATCGAT	1 cut(s)	5037
CseI	GACGC	4 cut(s)	3135, 3392, 3822, 5158
CsiI	ACCWGGT	1 cut(s)	4102
CspAI	ACCGGT	2 cut(s)	688, 5683
DraI	TTTAAA	2 cut(s)	1089, 1684
DraIII	CACNNNGTG	3 cut(s)	335, 383, 2873
EaeI	YGGCCR	3 cut(s)	1842, 4390, 4952
EciI	GGCGGA	2 cut(s)	90, 2823
Eco130I	CCWWGG	9 cut(s)	54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5840
Eco147I	AGGCCT	1 cut(s)	2632
Eco24I	GRGCYC	2 cut(s)	4066, 5780
Eco32I	GATATC	1 cut(s)	3075
Eco57I	CTGAAG	7 cut(s)	1419, 1458, 3089, 3474, 4349, 4904, 5577
Eco72I	CACGTG	1 cut(s)	4561
Eco81I	CCTNAGG	2 cut(s)	1590, 3387
EcoO109I	RGGNCCY	4 cut(s)	2016, 2487, 2927, 4550
EcoRI	GAATTC	1 cut(s)	2074
EcoRV	GATATC	1 cut(s)	3075
EcoT14I	CCWWGG	9 cut(s)	54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5840
EcoT22I	ATGCAT	2 cut(s)	6, 462
EcoT38I	GRGCYC	2 cut(s)	4066, 5780
ErhI	CCWWGG	9 cut(s)	54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5840
FalI	AAGNNNNNCTT	6 cut(s)	123, 155, 1443, 1475, 3359, 3391
FauI	CCCGC	6 cut(s)	153, 656, 1132, 2938, 3927, 4859
FauNDI	CATATG	1 cut(s)	5521
FbaI	TGATCA	2 cut(s)	268, 2788
FblI	GTMKAC	3 cut(s)	254, 361, 1692
FriOI	GRGCYC	2 cut(s)	4066, 5780
FspAI	RTGCGCAY	2 cut(s)	2675, 4595
FspI	TGCGCA	3 cut(s)	2675, 4595, 5889
GlaI	GCGC	5 cut(s)	107, 1865, 2675, 4595, 5889
GsaI	CCCAGC	3 cut(s)	2016, 4483, 4757
GsuI	CTGGAG	7 cut(s)	2427, 2736, 3123, 4278, 4341, 5258, 5355
HaeII	RGCGCY	1 cut(s)	1867
HapII	CCGG	7 cut(s)	437, 689, 4331, 4796, 5093, 5177, 5684
HgaI	GACGC	4 cut(s)	3135, 3392, 3822, 5158
HhaI	GCGC	5 cut(s)	108, 1866, 2676, 4596, 5890
Hin1I	GRCGYC	3 cut(s)	3146, 3833, 5169
Hin6I	GCGC	5 cut(s)	106, 1864, 2674, 4594, 5888
HinP1I	GCGC	5 cut(s)	106, 1864, 2674, 4594, 5888
HincII	GTYRAC	7 cut(s)	70, 362, 923, 1333, 1993, 4872, 5173
HindII	GTYRAC	7 cut(s)	70, 362, 923, 1333, 1993, 4872, 5173
HindIII	AAGCTT	1 cut(s)	1457
HpaII	CCGG	7 cut(s)	437, 689, 4331, 4796, 5093, 5177, 5684
Hpy99I	CGWCG	1 cut(s)	5266
HpyCH4IV	ACGT	3 cut(s)	668, 1215, 4560
HpySE526I	ACGT	3 cut(s)	668, 1215, 4560
Hsp92I	GRCGYC	3 cut(s)	3146, 3833, 5169
HspAI	GCGC	5 cut(s)	106, 1864, 2674, 4594, 5888
KflI	GGGWCCC	2 cut(s)	2016, 2927
Kpn2I	TCCGGA	1 cut(s)	4330
KpnI	GGTACC	1 cut(s)	4103
Ksp22I	TGATCA	2 cut(s)	268, 2788
LguI	GCTCTTC	4 cut(s)	1929, 3978, 4071, 5595
MabI	ACCWGGT	1 cut(s)	4102
MaeII	ACGT	3 cut(s)	668, 1215, 4560
MfeI	CAATTG	4 cut(s)	117, 954, 2328, 5376
MflI	RGATCY	5 cut(s)	20, 974, 1433, 2810, 3637
MhlI	GDGCHC	7 cut(s)	1145, 1279, 2308, 4066, 4459, 5780, 5817
MlsI	TGGCCA	2 cut(s)	1844, 4392
MluI	ACGCGT	1 cut(s)	2668
MluNI	TGGCCA	2 cut(s)	1844, 4392
MmeI	TCCRAC	7 cut(s)	783, 1572, 2082, 3797, 4207, 4702, 4829
Mox20I	TGGCCA	2 cut(s)	1844, 4392
Mph1103I	ATGCAT	2 cut(s)	6, 462
MroI	TCCGGA	1 cut(s)	4330
MroXI	GAANNNNTTC	2 cut(s)	1017, 4177
MscI	TGGCCA	2 cut(s)	1844, 4392
MslI	CAYNNNNRTG	5 cut(s)	9, 2618, 3798, 4595, 5073
Msp20I	TGGCCA	2 cut(s)	1844, 4392
MspA1I	CMGCKG	7 cut(s)	1139, 1289, 2012, 2143, 4618, 4951, 5324
MspI	CCGG	7 cut(s)	437, 689, 4331, 4796, 5093, 5177, 5684
MunI	CAATTG	4 cut(s)	117, 954, 2328, 5376
Mva1269I	GAATGC	6 cut(s)	235, 1237, 3398, 3498, 4002, 5239
MvnI	CGCG	3 cut(s)	106, 663, 2670
NciI	CCSGG	2 cut(s)	5094, 5177
NcoI	CCATGG	2 cut(s)	54, 3266
NdeI	CATATG	1 cut(s)	5521
NmeAIII	GCCGAG	1 cut(s)	134
NsbI	TGCGCA	3 cut(s)	2675, 4595, 5889
NsiI	ATGCAT	2 cut(s)	6, 462
NspI	RCATGY	3 cut(s)	2374, 2469, 4676
NspV	TTCGAA	4 cut(s)	2493, 3279, 4093, 4988
OliI	CACNNNNGTG	1 cut(s)	3798
PaeI	GCATGC	1 cut(s)	2374
PaqCI	CACCTGC	3 cut(s)	2941, 4836, 5389
PceI	AGGCCT	1 cut(s)	2632
PciSI	GCTCTTC	4 cut(s)	1929, 3978, 4071, 5595
PcsI	WCGNNNNNNNCGW	1 cut(s)	4090
PctI	GAATGC	6 cut(s)	235, 1237, 3398, 3498, 4002, 5239
PdmI	GAANNNNTTC	2 cut(s)	1017, 4177
PflFI	GACNNNGTC	2 cut(s)	3124, 4567
PflMI	CCANNNNNTGG	3 cut(s)	3122, 3257, 4838
PfoI	TCCNGGA	3 cut(s)	4069, 4273, 5092
PinAI	ACCGGT	2 cut(s)	688, 5683
PmaCI	CACGTG	1 cut(s)	4561
PmlI	CACGTG	1 cut(s)	4561
Ppu21I	YACGTR	1 cut(s)	4561
PpuMI	RGGWCCY	2 cut(s)	2016, 2927
PshAI	GACNNNNGTC	1 cut(s)	1338
PshBI	ATTAAT	1 cut(s)	1350
PsiI	TTATAA	1 cut(s)	2541
Psp5II	RGGWCCY	2 cut(s)	2016, 2927
PspCI	CACGTG	1 cut(s)	4561
PspFI	CCCAGC	3 cut(s)	2012, 4479, 4753
PspPPI	RGGWCCY	2 cut(s)	2016, 2927
PstNI	CAGNNNCTG	8 cut(s)	23, 239, 893, 1511, 2576, 3257, 5911, 6046
PsuI	RGATCY	5 cut(s)	20, 974, 1433, 2810, 3637
PsyI	GACNNNGTC	2 cut(s)	3124, 4567
PvuII	CAGCTG	3 cut(s)	1289, 2012, 5324
RseI	CAYNNNNRTG	5 cut(s)	9, 2618, 3798, 4595, 5073
SalI	GTCGAC	1 cut(s)	360
SapI	GCTCTTC	4 cut(s)	1929, 3978, 4071, 5595
ScaI	AGTACT	2 cut(s)	3355, 5620
SduI	GDGCHC	7 cut(s)	1145, 1279, 2308, 4066, 4459, 5780, 5817
SexAI	ACCWGGT	1 cut(s)	4102
SfcI	CTRYAG	1 cut(s)	2317
SfuI	TTCGAA	4 cut(s)	2493, 3279, 4093, 4988
SmiI	ATTTAAAT	1 cut(s)	1089
SmiMI	CAYNNNNRTG	5 cut(s)	9, 2618, 3798, 4595, 5073
SmlI	CTYRAG	6 cut(s)	129, 191, 1823, 3563, 5307, 5757
SmoI	CTYRAG	6 cut(s)	129, 191, 1823, 3563, 5307, 5757
SpeI	ACTAGT	2 cut(s)	1181, 3797
SphI	GCATGC	1 cut(s)	2374
SseBI	AGGCCT	1 cut(s)	2632
SspI	AATATT	1 cut(s)	840
StuI	AGGCCT	1 cut(s)	2632
StyI	CCWWGG	9 cut(s)	54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5840
SwaI	ATTTAAAT	1 cut(s)	1089
TaiI	ACGT	3 cut(s)	671, 1218, 4563
TaqII	GACCGA	2 cut(s)	721, 1058
TatI	WGTACW	7 cut(s)	622, 1220, 1496, 3304, 3353, 4772, 5618
TauI	GCSGC	3 cut(s)	4318, 4672, 4954
TspGWI	ACGGA	4 cut(s)	545, 3229, 4042, 4395
Tth111I	GACNNNGTC	2 cut(s)	3124, 4567
Van91I	CCANNNNNTGG	3 cut(s)	3122, 3257, 4838
VneI	GTGCAC	1 cut(s)	4455
VspI	ATTAAT	1 cut(s)	1350
XapI	RAATTY	8 cut(s)	185, 221, 948, 2074, 3411, 4279, 5746, 5791
XbaI	TCTAGA	1 cut(s)	3088
XceI	RCATGY	3 cut(s)	2374, 2469, 4676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmaJI	CCTAGG	1 cut(s)	2555
XmiI	GTMKAC	3 cut(s)	254, 361, 1692
XmnI	GAANNNNTTC	2 cut(s)	1017, 4177
ZrmI	AGTACT	2 cut(s)	3355, 5620
Zsp2I	ATGCAT	2 cut(s)	6, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.