Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

23685482 .. 23686351

Gene Structure 870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0165400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGACTGTATGGGTATTTGTTATGCTCATAGTGACACAAAGCTACACAGCTAATCTATCATCACTATTAACAGTCCAACAACCCCAGCCCACTGTTACCGAGTTAAATGATCTTTTAAGGAATGGCGATAATGTCGGCTACAGCAAGAATTCTTTTGTTCGTGAGGTCTTGATTGAAAAGGGTTTTAAAAACAGGGTCAAAGAAATTACATTGATGGAAGATGGTGACAAAGAACTCACAAAAGGTACTGCAAAGGGTGGTATTGCTGCTTTTGTTGGTGATACCCCAGCCTTGGAGTTTTTTCTTGCAAAGTACTGCTCCAAATACATCATGGTTGGACCTATCTCCAAAATTAATGGGTTTGCCTTCGTGTTCCTTAAAGGTTCACCTCTTGTAGTTGATATGTCAAGCGCAATCCTAAATGTGACCAAAGGGAAGAAGATTATGAAGATTGAAGCCAATTGGATTAAGAAAGAAAACAATTGTCAAGGTTCAAGTTCCAGCAATATCTCTGGCCCCAACAGTCTTGGCCTTAATAGCTTATGGGGACTATTCCTCATTGCTGGGATCGTTTCTGTATTCTCTCTTCTCATTTTTTTCACTTCCTTCATTTACAAGCACAAGCATGTCTTGATGTCCCCGGATTCAACAGCTTCTACATGGAGAAGGATTCGTGCCATATTTGAAACTTTTGATGATAGAGATGCCAGCTATTATATAGTTCTACAAGTAGTCAACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

247

Amino Acids

27.45

Weight (kDa)

9.23

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	1 - 190	4e-18	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	2 cut(s)	247, 314
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	176, 455, 495, 648, 686
AluBI	AGCT	5 cut(s)	42, 50, 540, 653, 711
AluI	AGCT	5 cut(s)	42, 50, 540, 653, 711
AlwI	GGATC	1 cut(s)	575
AoxI	GGCC	2 cut(s)	514, 529
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	338, 515
AsuC2I	CCSGG	1 cut(s)	641
AsuHPI	GGTGA	3 cut(s)	236, 290, 378
AvaII	GGWCC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	2 cut(s)	570, 602
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	208, 215
BcnI	CCSGG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	1 cut(s)	641
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	338, 515
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	641
BmsI	GCATC	1 cut(s)	694
BpuMI	CCSGG	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	291, 639
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	291, 639
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	558
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	3 cut(s)	84, 286, 563
BshFI	GGCC	2 cut(s)	516, 531
BsiSI	CCGG	1 cut(s)	641
BslFI	GGGAC	2 cut(s)	561, 622
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	561, 622
BsnI	GGCC	2 cut(s)	516, 531
Bsp143I	GATC	2 cut(s)	109, 567
BspANI	GGCC	2 cut(s)	516, 531
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	558
BssECI	CCNNGG	2 cut(s)	291, 639
BssMI	GATC	2 cut(s)	109, 567
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	7, 73, 94, 524
Bst6I	CTCTTC	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	2 cut(s)	112, 570
BstMBI	GATC	2 cut(s)	109, 567
BstMWI	GCNNNNNNNGC	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	629
BstSCI	CCNGG	1 cut(s)	639
BstSFI	CTRYAG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	516, 531
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	709
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	338, 515
Csp6I	GTAC	2 cut(s)	246, 313
CviAII	CATG	3 cut(s)	331, 626, 660
CviQI	GTAC	2 cut(s)	246, 313
DpnI	GATC	2 cut(s)	111, 569
DpnII	GATC	2 cut(s)	109, 567
DraI	TTTAAA	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	3 cut(s)	334, 629, 663
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	2 cut(s)	561, 622
FatI	CATG	3 cut(s)	330, 625, 659
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	3 cut(s)	88, 290, 567
HaeIII	GGCC	2 cut(s)	516, 531
HapII	CCGG	1 cut(s)	641
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	334, 629, 663
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	736
HindII	GTYRAC	1 cut(s)	736
HinfI	GANTC	2 cut(s)	644, 670
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	3 cut(s)	236, 290, 378
Hpy166II	GTNNAC	2 cut(s)	386, 736
Hpy188III	TCNNGA	3 cut(s)	161, 169, 631
Hpy8I	GTNNAC	2 cut(s)	386, 736
HpyAV	CCTTC	3 cut(s)	376, 616, 660
HpyCH4III	ACNGT	4 cut(s)	7, 73, 94, 524
HpyCH4V	TGCA	2 cut(s)	251, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	334, 629, 663
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	109, 567
LmnI	GCTCC	1 cut(s)	323
LpnPI	CCDG	8 cut(s)	98, 178, 300, 498, 514, 549, 654, 721
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	694
MaeIII	GTNAC	4 cut(s)	31, 94, 224, 424
MalI	GATC	2 cut(s)	111, 569
MboI	GATC	2 cut(s)	109, 567
MboII	GAAGA	5 cut(s)	230, 448, 451, 460, 578
MfeI	CAATTG	2 cut(s)	460, 481
MluCI	AATT	5 cut(s)	148, 204, 351, 460, 481
MmeI	TCCRAC	2 cut(s)	100, 316
MnlI	CCTC	3 cut(s)	157, 399, 566
MseI	TTAA	8 cut(s)	68, 104, 116, 186, 354, 378, 468, 534
MslI	CAYNNNNRTG	1 cut(s)	624
MspI	CCGG	1 cut(s)	641
MspR9I	CCNGG	1 cut(s)	641
MunI	CAATTG	2 cut(s)	460, 481
MwoI	GCNNNNNNNGC	1 cut(s)	537
NciI	CCSGG	1 cut(s)	641
NdeII	GATC	2 cut(s)	109, 567
NlaIII	CATG	3 cut(s)	334, 629, 663
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	3 cut(s)	31, 224, 424
NspI	RCATGY	1 cut(s)	629
PfeI	GAWTC	2 cut(s)	644, 670
PkrI	GCNGC	1 cut(s)	268
PshBI	ATTAAT	1 cut(s)	354
PspFI	CCCAGC	3 cut(s)	84, 286, 563
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	2 cut(s)	338, 515
RsaI	GTAC	2 cut(s)	247, 314
RsaNI	GTAC	2 cut(s)	246, 313
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	8 cut(s)	68, 104, 116, 186, 354, 378, 468, 534
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	109, 567
Sau96I	GGNCC	2 cut(s)	338, 515
ScaI	AGTACT	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	641
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	624
Sse9I	AATT	5 cut(s)	148, 204, 351, 460, 481
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	4 cut(s)	7, 73, 94, 524
TasI	AATT	5 cut(s)	148, 204, 351, 460, 481
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	644, 670
Tru1I	TTAA	8 cut(s)	68, 104, 116, 186, 354, 378, 468, 534
Tru9I	TTAA	8 cut(s)	68, 104, 116, 186, 354, 378, 468, 534
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	3 cut(s)	31, 224, 424
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	3 cut(s)	31, 224, 424
TspDTI	ATGAA	2 cut(s)	461, 598
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.