Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

23599335 .. 23605524

Gene Structure 6190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0165200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGAAGCTGGCCCTCTCAGACTTCTATGCATCCAATCCTCACTACAAGACTAGGTTGGTTTTGCTCCCAAGAAACTCCAAAGGAACTGTTGTTGGTGCAGCTGCAGCAGAAGTCCAAGCAATCATAGGGCCTGGAACATCAATGGAGGCAAAGTTTGTTGTTAATATGGGAGACCAAGCTCAAGTGCCCATTTTGACTTTTTCTGCATCAAGTCCTTGTCTTACTTCACTTGGGAGCTCTTTCTTTTTCCGACTTACACAAAATGACTCAATCCAAGTGAAAGCCATAAGTGATATTGTACAGAACTTTGGATGGAGACAAGTTGTTCCCATCTATGAAGACACTTCTTATGGGGAGGGAATCATACCGTTTCTAATCGATGCCTTGCAAGCAGTTGACGCTCAAGTTCCCTACAGAAGTGTAGTTTCTCATATAGCCACTGATGATCAAATTGAAATTGAGCTTTACAAGTTAATGACGAGGCAAACTAGAGTCTTCATTGTTCATATGAATCTTGATATGTGCTCTAAGTTATTTGCCAAGGCAAAAAAGATTGGAATGATGAGTGCAGGTTATGTTTGGATCACAACTGGTGGGATATCTAATCGTTTAAATTCGATGAGTTATTCAGACCTAAATTCCATGGAAGGTGTATTAGGTATACAAACAGACATTCAAAGAGCACCAAAGCGTAGAGACTTTAGAAAGAGGTGGGAAATGAAATTCCAACAAGACTATCCAAAATTAACCAAGGTTAAGTTGGATGTTTATGGATATCAAGCTCATGATGCTATCTTTGCACTAGCTATGGCAGTCGAACAAGTTGGACATACAAGCATTGAATATCAAAAGGCGAGTGATTCCTTCAAGGCAACAAATCTTGATGCCCTTAAGGTATCTCAGTATGGTCAAAAACTTGTTCGAGCTCTGTCTGGTACTAAATTTGAAGGTTTAGCTGGAGATTTCAATGTCGTAGAAGGGGAGCTTCAGTCATCAACTTATAAGATAATTAATGTAATTGGTGTTACGACCAAGGACATTGCATTGTGGACTCCAGAAAAAGGAATGGTTTCAACAAACACAAGCAAAACTTGTACTAATTCCAAGTGCATTTTTGGAACCATTAAATGGCCAGGTGATTCTTTCTCTGTTCCTAAAGGATGGGAAATTCCAACTAATAGAAAGAAGTTGAGAATAGGAGTTCCTGTCAAGGATGGTTTCACTGAGTTTGTTAAGATCACGAAAGATCCTTACACTAATACAACGGCTGTCACAGGGTTCTGTATTGATGTTTTCCATGCTGCAGTGAAATTATTACCGTATCATCTTCCTCATGAGTTCATTCCTTATGAAAATTCTAGTGGCTCGATGGCTGGGACTTATGATGATTTGGTCTATGAAGTATTTCTTGGCAAATTTGATGCTGTTGTTGGAGATACAACAATTAGAACAAACAGATCCTTGTATGTTGACTTTACAATGCCATACACTGAATCTAATGTAGGAATGGTTGTGCCAATCAGAGACAACAAAAGCAAAAATGCATGGATCTTCATGAAGCCTTTGACATGGGGCCTTTGGTTGACAACTTTGTGTTTCTTCATCTTTATTGCTTTTGTTGTTTGGGTGTTGGAACATCGAATTAACGAAGATTTTCGGGGTCCTCCTTCACACCAAGTTGGAACAAGCTTTTGGTTTTCTTTCTCAACCATGGTTTTTTCACATAGGGAGAGAGTGGTCAGCAACTCGGCTAGATTTGTGATGATTGTTTGGGTATTTATTATGCTCATAGTGACACAAAGCTACACAGCTAATCTATCGTCCCTATTAACAGTCCAACAACTCCAGCCCACTGTTACTGAGTTAAATGATCTTTTAAGGAATGGCGATATTGTCGGATACAGCAAGAATTCTTTTGTTCGTGAGATCTTGATTGGAATGGGTTTTAATAATACCAGGCTCAAGGAAATTAATTTGGTGGAAGATGGTGATAAAGAACTCACAAAAGGTACTGCGAAGGGTGGTATTGCTGCTTTTGTTGGTCAAACCCTAGGCTTGGAGATTTTTATTGCAAAGTACTGTTCCAAATACATCATGGTTGGACCTATCTCCAAAACTAATGGGTTTGCCTTCGTGTTCCCTAAAGGTTCATCTCTTGTAGCTGATATGTCGAGCGCAATCCTAAATGTGACCGAAGGAAAGAATATTCTAAAGATTGAGGCCAATTGGATTGAGAAAGAAAGAAATTGTCAAGACTCAAGTTCCGGCAATATCTCTGGCAACAGTCTTGGCCTTGATAGCTTTTGGGGACTATTCCTTATTGCCGGGGTTGCTTCTGTATTCGCTCTCATCATATTTTTTACTTCCTTCCTTTACAAGCATAAGCATGTCTTGATGCCCCCTGATTCAACAGCTTCTACCTGGAGAAAGATTCGTGCCATATTTGAAACTTTTGATGATAGAGATGCCAGCTATTATACTTCTAGAAGTAGTCAACAGTCGAAAAAATTCACTGGTGTTGGCCATCATGGACTGGATGCATCACAGGCTAGCAACTGGCCGGAAAGTCCGTTCAGCTATACAAACCATGGAGATCTTGATTCTGTATTTGGAGGTCAACAAACACCATCTACTGGTGGAGTATCTCCGGAACCAGTTCCAACTATTAAGCTTGCTATTACTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

895

Amino Acids

99.49

Weight (kDa)

8.65

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 340	7.7e-71	Receptor family ligand binding region
Peripla_BP_6	PF13458	37 - 286	2e-12	Periplasmic binding protein
Lig_chan-Glu_bd	PF10613	415 - 505	7.8e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	459 - 745	1.9e-06	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	524 - 778	2.3e-41	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
Acc36I	ACCTGC	1 cut(s)	560
AccB7I	CCANNNNNTGG	2 cut(s)	1128, 2633
AccI	GTMKAC	1 cut(s)	661
AccIII	TCCGGA	1 cut(s)	2647
AclWI	GGATC	4 cut(s)	590, 1241, 1452, 1556
AcoI	YGGCCR	3 cut(s)	1130, 2521, 2558
AcsI	RAATTY	9 cut(s)	613, 637, 722, 941, 1167, 1354, 1415, 1909, 2507
AcuI	CTGAAG	1 cut(s)	971
AfaI	GTAC	5 cut(s)	300, 937, 1096, 2011, 2078
AfiI	CCNNNNNNNGG	4 cut(s)	1061, 1128, 2056, 2633
AflII	CTTAAG	1 cut(s)	890
AgsI	TTSAA	9 cut(s)	455, 677, 842, 868, 947, 967, 1074, 2409, 2447
AjnI	CCWGG	4 cut(s)	130, 1132, 1955, 2420
AjuI	GAANNNNNNNTTGG	4 cut(s)	1392, 1424, 1675, 1707
AloI	GAACNNNNNNTCC	2 cut(s)	2555, 2587
Alw21I	GWGCWC	4 cut(s)	239, 527, 685, 928
Alw26I	GTCTC	4 cut(s)	165, 310, 690, 1518
AlwI	GGATC	4 cut(s)	590, 1241, 1452, 1556
Aor13HI	TCCGGA	1 cut(s)	2647
AoxI	GGCC	8 cut(s)	9, 128, 1130, 1573, 2220, 2290, 2521, 2558
ApeKI	GCWGC	5 cut(s)	98, 101, 104, 1301, 2030
ApoI	RAATTY	9 cut(s)	613, 637, 722, 941, 1167, 1354, 1415, 1909, 2507
AseI	ATTAAT	2 cut(s)	1011, 1971
Asp700I	GAANNNNTTC	5 cut(s)	1069, 1404, 1653, 2507, 2655
AspA2I	CCTAGG	1 cut(s)	2050
AspLEI	GCGC	1 cut(s)	2177
AspS9I	GGNCC	5 cut(s)	10, 128, 1573, 1661, 2102
AsuC2I	CCSGG	1 cut(s)	2326
AsuHPI	GGTGA	2 cut(s)	1148, 2000
AsuNHI	GCTAGC	1 cut(s)	2549
AvaII	GGWCC	2 cut(s)	1661, 2102
AvrII	CCTAGG	1 cut(s)	2050
BaeGI	GKGCMC	1 cut(s)	189
BalI	TGGCCA	2 cut(s)	1132, 2523
BanII	GRGCYC	2 cut(s)	239, 928
BbsI	GAAGAC	2 cut(s)	345, 487
Bbv12I	GWGCWC	4 cut(s)	239, 527, 685, 928
BbvI	GCAGC	5 cut(s)	88, 110, 116, 1288, 2017
BccI	CCATC	8 cut(s)	306, 338, 1155, 1208, 1363, 1979, 2532, 2635
BceAI	ACGGC	1 cut(s)	1281
BciT130I	CCWGG	4 cut(s)	132, 1134, 1957, 2422
BciVI	GTATCC	1 cut(s)	1892
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	2326
BcoDI	GTCTC	4 cut(s)	165, 310, 690, 1518
BfaI	CTAG	8 cut(s)	51, 489, 803, 1359, 1752, 2051, 2484, 2550
BfmI	CTRYAG	3 cut(s)	102, 412, 1302
BfrI	CTTAAG	1 cut(s)	890
BfuAI	ACCTGC	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	1892
BglII	AGATCT	2 cut(s)	1926, 2593
BisI	GCNGC	5 cut(s)	99, 102, 105, 1302, 2031
BlnI	CCTAGG	1 cut(s)	2050
BlsI	GCNGC	5 cut(s)	100, 103, 106, 1303, 2032
BmcAI	AGTACT	1 cut(s)	2078
Bme1390I	CCNGG	5 cut(s)	132, 1134, 1957, 2326, 2422
Bme18I	GGWCC	2 cut(s)	1661, 2102
BmgT120I	GGNCC	5 cut(s)	10, 128, 1573, 1661, 2102
BmiI	GGNNCC	4 cut(s)	1120, 1574, 1662, 2652
BmrFI	CCNGG	5 cut(s)	132, 1134, 1957, 2326, 2422
BmtI	GCTAGC	1 cut(s)	2553
BpiI	GAAGAC	2 cut(s)	345, 487
BpmI	CTGGAG	4 cut(s)	978, 1038, 1829, 2443
BpuEI	CTTGAG	4 cut(s)	165, 387, 1946, 2242
BpuMI	CCSGG	1 cut(s)	2326
Bsa29I	ATCGAT	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	8 cut(s)	540, 642, 750, 1032, 1710, 2050, 2325, 2587
BsaWI	WCCGGW	1 cut(s)	2647
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 974, 1004, 1191, 1221
Bsc4I	CCNNNNNNNGG	4 cut(s)	1061, 1128, 2056, 2633
Bse1I	ACTGG	6 cut(s)	595, 2518, 2538, 2561, 2638, 2654
Bse3DI	GCAATG	1 cut(s)	1038
BseAI	TCCGGA	1 cut(s)	2647
BseBI	CCWGG	4 cut(s)	132, 1134, 1957, 2422
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	8 cut(s)	540, 642, 750, 1032, 1710, 2050, 2325, 2587
BseGI	GGATG	6 cut(s)	29, 317, 769, 1166, 1219, 2542
BseLI	CCNNNNNNNGG	4 cut(s)	1061, 1128, 2056, 2633
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	4 cut(s)	30, 914, 1215, 1851
BseNI	ACTGG	6 cut(s)	595, 2518, 2538, 2561, 2638, 2654
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	5 cut(s)	88, 110, 116, 1288, 2017
BseYI	CCCAGC	1 cut(s)	1373
BsgI	GTGCAG	2 cut(s)	117, 588
BshFI	GGCC	8 cut(s)	11, 130, 1132, 1575, 2222, 2292, 2523, 2560
BshVI	ATCGAT	1 cut(s)	378
BsiHKAI	GWGCWC	4 cut(s)	239, 527, 685, 928
BsiSI	CCGG	4 cut(s)	2265, 2325, 2561, 2648
BslFI	GGGAC	3 cut(s)	1390, 1807, 2322
BslI	CCNNNNNNNGG	4 cut(s)	1061, 1128, 2056, 2633
BsmAI	GTCTC	4 cut(s)	165, 310, 690, 1518
BsmFI	GGGAC	3 cut(s)	1390, 1807, 2322
BsnI	GGCC	8 cut(s)	11, 130, 1132, 1575, 2222, 2292, 2523, 2560
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	5 cut(s)	189, 239, 527, 685, 928
Bsp13I	TCCGGA	1 cut(s)	2647
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
Bsp19I	CCATGG	3 cut(s)	642, 1710, 2587
BspANI	GGCC	8 cut(s)	11, 130, 1132, 1575, 2222, 2292, 2523, 2560
BspCNI	CTCAG	4 cut(s)	29, 913, 1216, 1852
BspDI	ATCGAT	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	2647
BspHI	TCATGA	3 cut(s)	784, 1333, 1554
BspLI	GGNNCC	4 cut(s)	1120, 1574, 1662, 2652
BspMAI	CTGCAG	2 cut(s)	106, 1306
BspMI	ACCTGC	1 cut(s)	560
BspOI	GCTAGC	1 cut(s)	2553
BspPI	GGATC	4 cut(s)	590, 1241, 1452, 1556
BspTI	CTTAAG	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	1038
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	6 cut(s)	595, 2518, 2538, 2561, 2638, 2654
BssECI	CCNNGG	8 cut(s)	540, 642, 750, 1032, 1710, 2050, 2325, 2587
BssMI	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
BssNAI	GTATAC	1 cut(s)	662
BssT1I	CCWWGG	7 cut(s)	540, 642, 750, 1032, 1710, 2050, 2587
Bst1107I	GTATAC	1 cut(s)	662
Bst2UI	CCWGG	4 cut(s)	132, 1134, 1957, 2422
Bst4CI	ACNGT	8 cut(s)	88, 369, 1320, 1834, 1855, 2081, 2285, 2499
BstAFI	CTTAAG	1 cut(s)	890
BstAUI	TGTACA	1 cut(s)	298
BstC8I	GCNNGC	5 cut(s)	9, 390, 2470, 2551, 2673
BstDEI	CTNAG	5 cut(s)	16, 528, 900, 1224, 1860
BstDSI	CCRYGG	3 cut(s)	642, 1710, 2587
BstF5I	GGATG	6 cut(s)	29, 317, 769, 1166, 1219, 2542
BstHHI	GCGC	1 cut(s)	2177
BstKTI	GATC	9 cut(s)	448, 585, 1239, 1249, 1460, 1551, 1873, 1929, 2596
BstMAI	GTCTC	4 cut(s)	165, 310, 690, 1518
BstMBI	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 389, 398, 788, 797, 2298, 2330, 2546
BstNI	CCWGG	4 cut(s)	132, 1134, 1957, 2422
BstNSI	RCATGY	1 cut(s)	2390
BstSCI	CCNGG	5 cut(s)	130, 1132, 1955, 2324, 2420
BstSFI	CTRYAG	3 cut(s)	102, 412, 1302
BstSLI	GKGCMC	1 cut(s)	189
BstV1I	GCAGC	5 cut(s)	88, 110, 116, 1288, 2017
BstV2I	GAAGAC	2 cut(s)	345, 487
BstX2I	RGATCY	5 cut(s)	1246, 1457, 1548, 1926, 2593
BstYI	RGATCY	5 cut(s)	1246, 1457, 1548, 1926, 2593
BstZ17I	GTATAC	1 cut(s)	662
Bsu15I	ATCGAT	1 cut(s)	378
BsuI	GTATCC	1 cut(s)	1892
BsuRI	GGCC	8 cut(s)	11, 130, 1132, 1575, 2222, 2292, 2523, 2560
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	3 cut(s)	642, 1710, 2587
BtsCI	GGATG	6 cut(s)	29, 317, 769, 1166, 1219, 2542
BtsI	GCAGTG	1 cut(s)	1311
BtsIMutI	CAGTG	6 cut(s)	438, 1221, 1311, 1488, 1851, 2511
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	5 cut(s)	9, 390, 2470, 2551, 2673
CciI	TCATGA	3 cut(s)	784, 1333, 1554
CfoI	GCGC	1 cut(s)	2177
Cfr13I	GGNCC	5 cut(s)	10, 128, 1573, 1661, 2102
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	5 cut(s)	299, 936, 1095, 2010, 2077
CviQI	GTAC	5 cut(s)	299, 936, 1095, 2010, 2077
DdeI	CTNAG	5 cut(s)	16, 528, 900, 1224, 1860
DpnI	GATC	9 cut(s)	447, 584, 1238, 1248, 1459, 1550, 1872, 1928, 2595
DpnII	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
DraI	TTTAAA	1 cut(s)	612
EaeI	YGGCCR	3 cut(s)	1130, 2521, 2558
Ecl136II	GAGCTC	2 cut(s)	237, 926
Eco130I	CCWWGG	7 cut(s)	540, 642, 750, 1032, 1710, 2050, 2587
Eco24I	GRGCYC	2 cut(s)	239, 928
Eco31I	GGTCTC	1 cut(s)	165
Eco32I	GATATC	2 cut(s)	600, 776
Eco47I	GGWCC	2 cut(s)	1661, 2102
Eco53kI	GAGCTC	2 cut(s)	237, 926
Eco57I	CTGAAG	1 cut(s)	971
EcoICRI	GAGCTC	2 cut(s)	237, 926
EcoO109I	RGGNCCY	3 cut(s)	128, 1573, 1661
EcoRI	GAATTC	1 cut(s)	1909
EcoRII	CCWGG	4 cut(s)	130, 1132, 1955, 2420
EcoRV	GATATC	2 cut(s)	600, 776
EcoT14I	CCWWGG	7 cut(s)	540, 642, 750, 1032, 1710, 2050, 2587
EcoT22I	ATGCAT	3 cut(s)	31, 1546, 2542
EcoT38I	GRGCYC	2 cut(s)	239, 928
ErhI	CCWWGG	7 cut(s)	540, 642, 750, 1032, 1710, 2050, 2587
FalI	AAGNNNNNCTT	8 cut(s)	969, 1001, 1075, 1107, 1392, 1424, 2375, 2407
FaqI	GGGAC	3 cut(s)	1390, 1807, 2322
FauNDI	CATATG	1 cut(s)	507
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	661
Fnu4HI	GCNGC	5 cut(s)	99, 102, 105, 1302, 2031
FokI	GGATG	6 cut(s)	16, 324, 776, 1173, 1226, 2549
FriOI	GRGCYC	2 cut(s)	239, 928
Fsp4HI	GCNGC	5 cut(s)	99, 102, 105, 1302, 2031
FspBI	CTAG	8 cut(s)	51, 489, 803, 1359, 1752, 2051, 2484, 2550
GlaI	GCGC	1 cut(s)	2176
GluI	GCNGC	5 cut(s)	99, 102, 105, 1302, 2031
GsaI	CCCAGC	1 cut(s)	1377
GsuI	CTGGAG	4 cut(s)	978, 1038, 1829, 2443
HaeIII	GGCC	8 cut(s)	11, 130, 1132, 1575, 2222, 2292, 2523, 2560
HapII	CCGG	4 cut(s)	2265, 2325, 2561, 2648
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	1 cut(s)	2177
Hin6I	GCGC	1 cut(s)	2175
HinP1I	GCGC	1 cut(s)	2175
HincII	GTYRAC	5 cut(s)	397, 1471, 1584, 2495, 2618
HindII	GTYRAC	5 cut(s)	397, 1471, 1584, 2495, 2618
HindIII	AAGCTT	2 cut(s)	1687, 2669
HpaII	CCGG	4 cut(s)	2265, 2325, 2561, 2648
HphI	GGTGA	2 cut(s)	1148, 2000
Hpy166II	GTNNAC	7 cut(s)	397, 662, 1050, 1471, 1584, 2495, 2618
Hpy188I	TCNGA	5 cut(s)	19, 251, 631, 1523, 1898
Hpy8I	GTNNAC	7 cut(s)	397, 662, 1050, 1471, 1584, 2495, 2618
HpyAV	CCTTC	9 cut(s)	641, 874, 941, 971, 1677, 2011, 2140, 2189, 2377
HpyCH4III	ACNGT	8 cut(s)	88, 369, 1320, 1834, 1855, 2081, 2285, 2499
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 389, 398, 788, 797, 2298, 2330, 2546
HpyF3I	CTNAG	5 cut(s)	16, 528, 900, 1224, 1860
HspAI	GCGC	1 cut(s)	2175
Kpn2I	TCCGGA	1 cut(s)	2647
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
LmnI	GCTCC	3 cut(s)	69, 234, 982
Lsp1109I	GCAGC	5 cut(s)	88, 110, 116, 1288, 2017
MaeI	CTAG	8 cut(s)	51, 489, 803, 1359, 1752, 2051, 2484, 2550
MaeIII	GTNAC	5 cut(s)	1024, 1270, 1792, 1855, 2188
MalI	GATC	9 cut(s)	447, 584, 1238, 1248, 1459, 1550, 1872, 1928, 2595
MboI	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
MboII	GAAGA	7 cut(s)	350, 487, 1319, 1543, 1591, 1661, 1994
MfeI	CAATTG	1 cut(s)	2224
MflI	RGATCY	5 cut(s)	1246, 1457, 1548, 1926, 2593
MhlI	GDGCHC	5 cut(s)	189, 239, 527, 685, 928
MlsI	TGGCCA	2 cut(s)	1132, 2523
MluNI	TGGCCA	2 cut(s)	1132, 2523
MlyI	GAGTC	4 cut(s)	260, 501, 1045, 2249
Mox20I	TGGCCA	2 cut(s)	1132, 2523
Mph1103I	ATGCAT	3 cut(s)	31, 1546, 2542
MroI	TCCGGA	1 cut(s)	2647
MroXI	GAANNNNTTC	5 cut(s)	1069, 1404, 1653, 2507, 2655
MscI	TGGCCA	2 cut(s)	1132, 2523
MslI	CAYNNNNRTG	1 cut(s)	2385
Msp20I	TGGCCA	2 cut(s)	1132, 2523
MspA1I	CMGCKG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	4 cut(s)	2265, 2325, 2561, 2648
MspR9I	CCNGG	5 cut(s)	132, 1134, 1957, 2326, 2422
MunI	CAATTG	1 cut(s)	2224
MvaI	CCWGG	4 cut(s)	132, 1134, 1957, 2422
MwoI	GCNNNNNNNGC	8 cut(s)	104, 389, 398, 788, 797, 2298, 2330, 2546
NciI	CCSGG	1 cut(s)	2326
NcoI	CCATGG	3 cut(s)	642, 1710, 2587
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
NheI	GCTAGC	1 cut(s)	2549
NlaIV	GGNNCC	4 cut(s)	1120, 1574, 1662, 2652
NmeAIII	GCCGAG	1 cut(s)	1727
NmuCI	GTSAC	3 cut(s)	1270, 1792, 2188
NsiI	ATGCAT	3 cut(s)	31, 1546, 2542
NspI	RCATGY	1 cut(s)	2390
PagI	TCATGA	3 cut(s)	784, 1333, 1554
PdmI	GAANNNNTTC	5 cut(s)	1069, 1404, 1653, 2507, 2655
PfeI	GAWTC	8 cut(s)	360, 511, 860, 1139, 1493, 2405, 2431, 2600
PflMI	CCANNNNNTGG	2 cut(s)	1128, 2633
PkrI	GCNGC	5 cut(s)	100, 103, 106, 1303, 2032
PleI	GAGTC	4 cut(s)	260, 500, 1045, 2249
PpsI	GAGTC	4 cut(s)	260, 500, 1045, 2249
PpuMI	RGGWCCY	1 cut(s)	1661
PshBI	ATTAAT	2 cut(s)	1011, 1971
PsiI	TTATAA	1 cut(s)	1002
Psp124BI	GAGCTC	2 cut(s)	239, 928
Psp5II	RGGWCCY	1 cut(s)	1661
Psp6I	CCWGG	4 cut(s)	130, 1132, 1955, 2420
PspFI	CCCAGC	1 cut(s)	1373
PspGI	CCWGG	4 cut(s)	130, 1132, 1955, 2420
PspN4I	GGNNCC	4 cut(s)	1120, 1574, 1662, 2652
PspPI	GGNCC	5 cut(s)	10, 128, 1573, 1661, 2102
PspPPI	RGGWCCY	1 cut(s)	1661
PstI	CTGCAG	2 cut(s)	106, 1306
PsuI	RGATCY	5 cut(s)	1246, 1457, 1548, 1926, 2593
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	5 cut(s)	300, 937, 1096, 2011, 2078
RsaNI	GTAC	5 cut(s)	299, 936, 1095, 2010, 2077
RseI	CAYNNNNRTG	1 cut(s)	2385
SacI	GAGCTC	2 cut(s)	239, 928
SatI	GCNGC	5 cut(s)	99, 102, 105, 1302, 2031
Sau3AI	GATC	9 cut(s)	445, 582, 1236, 1246, 1457, 1548, 1870, 1926, 2593
Sau96I	GGNCC	5 cut(s)	10, 128, 1573, 1661, 2102
ScaI	AGTACT	1 cut(s)	2078
SchI	GAGTC	4 cut(s)	260, 501, 1045, 2249
ScrFI	CCNGG	5 cut(s)	132, 1134, 1957, 2326, 2422
SduI	GDGCHC	5 cut(s)	189, 239, 527, 685, 928
SfcI	CTRYAG	3 cut(s)	102, 412, 1302
SinI	GGWCC	2 cut(s)	1661, 2102
SmiMI	CAYNNNNRTG	1 cut(s)	2385
SmlI	CTYRAG	5 cut(s)	180, 402, 890, 1961, 2257
SmoI	CTYRAG	5 cut(s)	180, 402, 890, 1961, 2257
SspI	AATATT	1 cut(s)	2206
SspMI	CTAG	8 cut(s)	51, 489, 803, 1359, 1752, 2051, 2484, 2550
SstI	GAGCTC	2 cut(s)	239, 928
StyD4I	CCNGG	5 cut(s)	130, 1132, 1955, 2324, 2420
StyI	CCWWGG	7 cut(s)	540, 642, 750, 1032, 1710, 2050, 2587
TaaI	ACNGT	8 cut(s)	88, 369, 1320, 1834, 1855, 2081, 2285, 2499
TaqI	TCGA	8 cut(s)	378, 617, 816, 922, 1367, 1639, 2171, 2501
TaqII	GACCGA	1 cut(s)	2207
TatI	WGTACW	3 cut(s)	298, 1094, 2076
TfiI	GAWTC	8 cut(s)	360, 511, 860, 1139, 1493, 2405, 2431, 2600
TscAI	CASTG	6 cut(s)	445, 1228, 1311, 1495, 1858, 2518
TseFI	GTSAC	3 cut(s)	1270, 1792, 2188
TseI	GCWGC	5 cut(s)	98, 101, 104, 1301, 2030
Tsp45I	GTSAC	3 cut(s)	1270, 1792, 2188
TspGWI	ACGGA	1 cut(s)	2559
TspRI	CASTG	6 cut(s)	445, 1228, 1311, 1495, 1858, 2518
Van91I	CCANNNNNTGG	2 cut(s)	1128, 2633
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	2 cut(s)	1661, 2102
VspI	ATTAAT	2 cut(s)	1011, 1971
XapI	RAATTY	9 cut(s)	613, 637, 722, 941, 1167, 1354, 1415, 1909, 2507
XbaI	TCTAGA	1 cut(s)	2483
XceI	RCATGY	1 cut(s)	2390
XcmI	CCANNNNNNNNNTGG	2 cut(s)	757, 2092
XmaJI	CCTAGG	1 cut(s)	2050
XmiI	GTMKAC	1 cut(s)	661
XmnI	GAANNNNTTC	5 cut(s)	1069, 1404, 1653, 2507, 2655
XspI	CTAG	8 cut(s)	51, 489, 803, 1359, 1752, 2051, 2484, 2550
ZrmI	AGTACT	1 cut(s)	2078
Zsp2I	ATGCAT	3 cut(s)	31, 1546, 2542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.