Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8337863.1

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 965

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8337863.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 745 bp

ttctgattttcagaacaatcgctcaggcaatactgaagtgaaagttgaggaagatatgaacgaaagtagatctgaagtgcgtaatgaagtaaagcttcatccaaacactgagggagagcaacaaagtggttgtactatatcagaagctgaaaagaaactggatgatgtggtggataatggttccaacatcaagaaagagaactcttctggcagaccccagactcctcaggatttatctatgtgtcagcttcctgaaactattttgccagcgatagactctgccaagggttcagactgtcagacttctgatagtcactttaaagtggtagacaaggcacatgaagattctattttggaagaggctcggatgatagaggccaagcgtaagaggattgcagaattatccgttcgttctttaccctccgagaatcaccgaaagtctcagtgggattttgtccttgaggaaatgtcgtggttggccaatgattttgctcaggagcgcctttggaagctaactgctgctgctcaaatatgccatcgtgttgcttttacatcacggttgagaattgacgagcaacaacaacaatgggggattaaaaaagtggctcgtaccctggcaaatgctgtcaaccaattttggcattcagctgggacccttttgtatgctgatgattcaagtgattgtcacaacatcaccaagagcaatttgaattcgagcaaagtaagattgctttctttgtcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

247

Amino Acids

27.91

Weight (kDa)

5.58

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	2 cut(s)	55, 94
AfaI	GTAC	2 cut(s)	134, 611
AgsI	TTSAA	2 cut(s)	676, 710
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	5 cut(s)	95, 147, 248, 512, 648
AluI	AGCT	5 cut(s)	95, 147, 248, 512, 648
Alw26I	GTCTC	1 cut(s)	445
AlwNI	CAGNNNCTG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	376, 478
ApeKI	GCWGC	2 cut(s)	519, 522
ApoI	RAATTY	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	423, 686
AvaII	GGWCC	1 cut(s)	652
AxyI	CCTNAGG	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	506, 509
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	445
BfoI	RGCGCY	1 cut(s)	503
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	2 cut(s)	520, 523
BlsI	GCNGC	2 cut(s)	521, 524
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	652
BmgT120I	GGNCC	1 cut(s)	652
BmiI	GGNNCC	3 cut(s)	182, 653, 654
BmrFI	CCNGG	1 cut(s)	615
Bpu10I	CCTNAGC	2 cut(s)	23, 493
BpuEI	CTTGAG	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	283, 613
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	283, 613
BseGI	GGATG	3 cut(s)	98, 167, 373
BseMII	CTCAG	5 cut(s)	37, 100, 240, 456, 507
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	506, 509
BseYI	CCCAGC	1 cut(s)	648
BshFI	GGCC	2 cut(s)	378, 480
BslFI	GGGAC	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	378, 480
Bsp143I	GATC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	378, 480
BspCNI	CTCAG	5 cut(s)	36, 101, 239, 455, 506
BspLI	GGNNCC	3 cut(s)	182, 653, 654
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	283, 613
BssMI	GATC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	297, 559
Bst6I	CTCTTC	2 cut(s)	209, 352
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	6 cut(s)	23, 109, 226, 442, 493, 742
BstF5I	GGATG	3 cut(s)	98, 167, 373
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	615
BstSCI	CCNGG	1 cut(s)	613
BstV1I	GCAGC	2 cut(s)	506, 509
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	378, 480
BtsCI	GGATG	3 cut(s)	98, 167, 373
BtsIMutI	CAGTG	2 cut(s)	106, 450
Cac8I	GCNNGC	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	652
Csp6I	GTAC	2 cut(s)	133, 610
CviAII	CATG	1 cut(s)	339
CviJI	RGCY	9 cut(s)	95, 147, 248, 363, 378, 480, 512, 606, 648
CviKI_1	RGCY	9 cut(s)	95, 147, 248, 363, 378, 480, 512, 606, 648
CviQI	GTAC	2 cut(s)	133, 610
DdeI	CTNAG	6 cut(s)	23, 109, 226, 442, 493, 742
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DraI	TTTAAA	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	209, 352
EarI	CTCTTC	2 cut(s)	209, 352
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	652
Eco57I	CTGAAG	2 cut(s)	55, 94
Eco81I	CCTNAGG	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	342
FaiI	YATR	6 cut(s)	57, 138, 240, 340, 533, 664
FalI	AAGNNNNNCTT	2 cut(s)	79, 111
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	1 cut(s)	338
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	520, 523
FokI	GGATG	3 cut(s)	85, 174, 380
Fsp4HI	GCNGC	2 cut(s)	520, 523
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	2 cut(s)	520, 523
GsaI	CCCAGC	1 cut(s)	652
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	378, 480
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	629
HindII	GTYRAC	1 cut(s)	629
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	5 cut(s)	221, 276, 345, 428, 672
HphI	GGTGA	2 cut(s)	423, 686
Hpy166II	GTNNAC	2 cut(s)	329, 629
Hpy188I	TCNGA	9 cut(s)	5, 13, 74, 143, 293, 301, 308, 367, 425
Hpy188III	TCNNGA	4 cut(s)	191, 228, 252, 495
Hpy8I	GTNNAC	2 cut(s)	329, 629
HpyCH4III	ACNGT	2 cut(s)	297, 559
HpyCH4V	TGCA	1 cut(s)	396
HpyF3I	CTNAG	6 cut(s)	23, 109, 226, 442, 493, 742
Hsp92II	CATG	1 cut(s)	342
HspAI	GCGC	1 cut(s)	500
KflI	GGGWCCC	1 cut(s)	652
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	2 cut(s)	506, 509
MaeIII	GTNAC	2 cut(s)	312, 684
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	4 cut(s)	63, 196, 354, 369
MflI	RGATCY	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	5 cut(s)	399, 565, 633, 704, 710
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	2 cut(s)	215, 270
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	8 cut(s)	41, 104, 235, 353, 368, 382, 431, 455
Mox20I	TGGCCA	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	2 cut(s)	319, 595
Msp20I	TGGCCA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	615
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	615
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	1 cut(s)	342
NlaIV	GGNNCC	3 cut(s)	182, 653, 654
NmuCI	GTSAC	2 cut(s)	312, 684
PctI	GAATGC	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	345, 428, 672
PkrI	GCNGC	2 cut(s)	521, 524
PleI	GAGTC	2 cut(s)	215, 270
PpsI	GAGTC	2 cut(s)	215, 270
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	182, 653, 654
PspPI	GGNCC	1 cut(s)	652
PspPPI	RGGWCCY	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	648
RsaI	GTAC	2 cut(s)	134, 611
RsaNI	GTAC	2 cut(s)	133, 610
SaqAI	TTAA	2 cut(s)	319, 595
SatI	GCNGC	2 cut(s)	520, 523
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	652
SchI	GAGTC	2 cut(s)	215, 270
ScrFI	CCNGG	1 cut(s)	615
SetI	ASST	5 cut(s)	97, 149, 250, 514, 650
SinI	GGWCC	1 cut(s)	652
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
Sse9I	AATT	5 cut(s)	399, 565, 633, 704, 710
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	297, 559
TaqI	TCGA	1 cut(s)	714
TasI	AATT	5 cut(s)	399, 565, 633, 704, 710
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	3 cut(s)	345, 428, 672
Tru1I	TTAA	2 cut(s)	319, 595
Tru9I	TTAA	2 cut(s)	319, 595
TscAI	CASTG	2 cut(s)	113, 450
TseFI	GTSAC	2 cut(s)	312, 684
TseI	GCWGC	2 cut(s)	519, 522
Tsp45I	GTSAC	2 cut(s)	312, 684
TspDTI	ATGAA	4 cut(s)	72, 87, 100, 355
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	113, 450
VpaK11BI	GGWCC	1 cut(s)	652
XapI	RAATTY	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.