HSA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880 |
| fragaria_vesca | FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 |
| malus_domestica | MD05G1174400.v1.1 MD10G1163500.v1.1 |
| prunus_persica | Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 |
| pyrus_communis | pycom05g16120 pycom10g14100 |
| rosa_chinensis | RchiOBHm_Chr6g0284671 |
| rosa_laevigata | RLG00000012732 |
| rosa_multiflora | Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00184490 |
| rosa_rugosa | Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400 |
| rosa_samantha | Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300 |
| rosa_wichuraiana | Rw6G023920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2541 |
| AarI | CACCTGC | 3 cut(s) | 2941, 4836, 5389 |
| Acc16I | TGCGCA | 3 cut(s) | 2675, 4595, 5817 |
| Acc36I | ACCTGC | 4 cut(s) | 2941, 4363, 4836, 5389 |
| Acc65I | GGTACC | 1 cut(s) | 4099 |
| AccB1I | GGYRCC | 4 cut(s) | 4099, 4666, 4935, 5317 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 3122, 3257, 4412, 4838 |
| AccI | GTMKAC | 2 cut(s) | 361, 1692 |
| AccII | CGCG | 4 cut(s) | 106, 663, 2670, 4299 |
| AccIII | TCCGGA | 1 cut(s) | 4330 |
| AcoI | YGGCCR | 4 cut(s) | 1842, 3244, 4390, 4952 |
| AcsI | RAATTY | 9 cut(s) | 185, 221, 948, 2074, 3411, 4279, 5482, 5674, 5719 |
| AcuI | CTGAAG | 7 cut(s) | 1419, 1458, 3089, 3474, 4349, 4904, 5505 |
| AcyI | GRCGYC | 3 cut(s) | 3146, 3833, 5169 |
| AdeI | CACNNNGTG | 3 cut(s) | 335, 383, 2873 |
| AflIII | ACRYGT | 1 cut(s) | 2668 |
| AgeI | ACCGGT | 2 cut(s) | 688, 5611 |
| AhlI | ACTAGT | 2 cut(s) | 1181, 3797 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3952, 3984 |
| AleI | CACNNNNGTG | 1 cut(s) | 3798 |
| Alw21I | GWGCWC | 1 cut(s) | 4459 |
| Alw26I | GTCTC | 6 cut(s) | 1809, 2423, 3090, 3573, 5373, 5958 |
| Alw44I | GTGCAC | 1 cut(s) | 4455 |
| AlwNI | CAGNNNCTG | 8 cut(s) | 23, 239, 893, 1511, 2576, 3257, 5839, 5974 |
| Aor13HI | TCCGGA | 1 cut(s) | 4330 |
| ApaLI | GTGCAC | 1 cut(s) | 4455 |
| ApoI | RAATTY | 9 cut(s) | 185, 221, 948, 2074, 3411, 4279, 5482, 5674, 5719 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 206, 238 |
| AseI | ATTAAT | 1 cut(s) | 1350 |
| AsiGI | ACCGGT | 2 cut(s) | 688, 5611 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1017, 4177 |
| Asp718I | GGTACC | 1 cut(s) | 4099 |
| AspA2I | CCTAGG | 1 cut(s) | 2555 |
| AspLEI | GCGC | 6 cut(s) | 108, 1866, 2676, 3827, 4596, 5818 |
| AsuC2I | CCSGG | 2 cut(s) | 2805, 5094 |
| AsuII | TTCGAA | 4 cut(s) | 2493, 3279, 4093, 4988 |
| AvrII | CCTAGG | 1 cut(s) | 2555 |
| AxyI | CCTNAGG | 2 cut(s) | 1590, 3387 |
| BaeGI | GKGCMC | 5 cut(s) | 1145, 1279, 2308, 4459, 5745 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 1200, 1233, 3940, 3973, 4448, 4481, 4782, 4815 |
| BalI | TGGCCA | 3 cut(s) | 1844, 3246, 4392 |
| BamHI | GGATCC | 2 cut(s) | 2810, 3637 |
| BanI | GGYRCC | 4 cut(s) | 4099, 4666, 4935, 5317 |
| BanII | GRGCYC | 2 cut(s) | 4066, 5708 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4765, 4797 |
| BauI | CACGAG | 1 cut(s) | 333 |
| BbsI | GAAGAC | 5 cut(s) | 492, 546, 639, 1010, 5376 |
| Bbv12I | GWGCWC | 1 cut(s) | 4459 |
| BbvCI | CCTCAGC | 1 cut(s) | 4944 |
| BceAI | ACGGC | 3 cut(s) | 88, 615, 976 |
| BciVI | GTATCC | 1 cut(s) | 4476 |
| BclI | TGATCA | 2 cut(s) | 268, 2788 |
| BcnI | CCSGG | 2 cut(s) | 2805, 5094 |
| BcoDI | GTCTC | 6 cut(s) | 1809, 2423, 3090, 3573, 5373, 5958 |
| BcuI | ACTAGT | 2 cut(s) | 1181, 3797 |
| BfmI | CTRYAG | 1 cut(s) | 2317 |
| BfoI | RGCGCY | 2 cut(s) | 1867, 3828 |
| BfuAI | ACCTGC | 4 cut(s) | 2941, 4363, 4836, 5389 |
| BfuI | GTATCC | 1 cut(s) | 4476 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 3850, 4960, 5983 |
| BglII | AGATCT | 2 cut(s) | 974, 1433 |
| BlnI | CCTAGG | 1 cut(s) | 2555 |
| BlpI | GCTNAGC | 1 cut(s) | 5248 |
| BmcAI | AGTACT | 2 cut(s) | 3355, 5548 |
| BmrI | ACTGGG | 5 cut(s) | 2733, 2809, 3132, 4209, 5171 |
| BmuI | ACTGGG | 5 cut(s) | 2733, 2809, 3132, 4209, 5171 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1338 |
| BpiI | GAAGAC | 5 cut(s) | 492, 546, 639, 1010, 5376 |
| BpmI | CTGGAG | 7 cut(s) | 2427, 2736, 3123, 4278, 4341, 5258, 5355 |
| Bpu10I | CCTNAGC | 4 cut(s) | 16, 1387, 1857, 4944 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5248 |
| Bpu14I | TTCGAA | 4 cut(s) | 2493, 3279, 4093, 4988 |
| BpuEI | CTTGAG | 6 cut(s) | 114, 212, 1844, 3548, 5292, 5670 |
| BpuMI | CCSGG | 2 cut(s) | 2805, 5094 |
| Bsa29I | ATCGAT | 1 cut(s) | 5037 |
| BsaBI | GATNNNNATC | 2 cut(s) | 273, 5664 |
| BsaHI | GRCGYC | 3 cut(s) | 3146, 3833, 5169 |
| BsaWI | WCCGGW | 5 cut(s) | 436, 688, 4330, 4795, 5611 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 69, 99, 2825, 2855, 3610, 3640 |
| Bse118I | RCCGGY | 2 cut(s) | 688, 5611 |
| Bse21I | CCTNAGG | 2 cut(s) | 1590, 3387 |
| Bse3DI | GCAATG | 1 cut(s) | 5825 |
| Bse8I | GATNNNNATC | 2 cut(s) | 273, 5664 |
| BseAI | TCCGGA | 1 cut(s) | 4330 |
| BseCI | ATCGAT | 1 cut(s) | 5037 |
| BseJI | GATNNNNATC | 2 cut(s) | 273, 5664 |
| BseMI | GCAATG | 1 cut(s) | 5825 |
| BseRI | GAGGAG | 2 cut(s) | 1578, 3631 |
| BseSI | GKGCMC | 5 cut(s) | 1145, 1279, 2308, 4459, 5745 |
| BseYI | CCCAGC | 3 cut(s) | 2012, 4479, 4753 |
| BsgI | GTGCAG | 4 cut(s) | 845, 1155, 3344, 5423 |
| Bsh1236I | CGCG | 4 cut(s) | 106, 663, 2670, 4299 |
| BshNI | GGYRCC | 4 cut(s) | 4099, 4666, 4935, 5317 |
| BshTI | ACCGGT | 2 cut(s) | 688, 5611 |
| BshVI | ATCGAT | 1 cut(s) | 5037 |
| BsiHKAI | GWGCWC | 1 cut(s) | 4459 |
| BsiSI | CCGG | 7 cut(s) | 437, 689, 2805, 4331, 4796, 5093, 5612 |
| BsmAI | GTCTC | 6 cut(s) | 1809, 2423, 3090, 3573, 5373, 5958 |
| BsmI | GAATGC | 7 cut(s) | 235, 1237, 2005, 3398, 3498, 4002, 5239 |
| Bsp119I | TTCGAA | 4 cut(s) | 2493, 3279, 4093, 4988 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1145, 1279, 2308, 4066, 4459, 5708, 5745 |
| Bsp13I | TCCGGA | 1 cut(s) | 4330 |
| Bsp1407I | TGTACA | 2 cut(s) | 622, 3304 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5248 |
| Bsp19I | CCATGG | 2 cut(s) | 54, 3266 |
| Bsp68I | TCGCGA | 1 cut(s) | 4299 |
| BspDI | ATCGAT | 1 cut(s) | 5037 |
| BspEI | TCCGGA | 1 cut(s) | 4330 |
| BspFNI | CGCG | 4 cut(s) | 106, 663, 2670, 4299 |
| BspMI | ACCTGC | 4 cut(s) | 2941, 4363, 4836, 5389 |
| BspQI | GCTCTTC | 3 cut(s) | 3978, 4071, 5523 |
| BspT104I | TTCGAA | 4 cut(s) | 2493, 3279, 4093, 4988 |
| BspT107I | GGYRCC | 4 cut(s) | 4099, 4666, 4935, 5317 |
| BsrDI | GCAATG | 1 cut(s) | 5825 |
| BsrFI | RCCGGY | 2 cut(s) | 688, 5611 |
| BsrGI | TGTACA | 2 cut(s) | 622, 3304 |
| BssAI | RCCGGY | 2 cut(s) | 688, 5611 |
| BssNI | GRCGYC | 3 cut(s) | 3146, 3833, 5169 |
| BssSI | CACGAG | 1 cut(s) | 333 |
| BssT1I | CCWWGG | 9 cut(s) | 54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5768 |
| Bst2BI | CACGAG | 1 cut(s) | 333 |
| Bst6I | CTCTTC | 9 cut(s) | 1573, 1716, 2373, 3546, 3978, 4071, 4996, 5263, 5523 |
| BstACI | GRCGYC | 3 cut(s) | 3146, 3833, 5169 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 323, 3997, 5137, 5236, 5839, 5965, 5974 |
| BstAUI | TGTACA | 2 cut(s) | 622, 3304 |
| BstBI | TTCGAA | 4 cut(s) | 2493, 3279, 4093, 4988 |
| BstDSI | CCRYGG | 3 cut(s) | 54, 631, 3266 |
| BstFNI | CGCG | 4 cut(s) | 106, 663, 2670, 4299 |
| BstH2I | RGCGCY | 2 cut(s) | 1867, 3828 |
| BstHHI | GCGC | 6 cut(s) | 108, 1866, 2676, 3827, 4596, 5818 |
| BstMAI | GTCTC | 6 cut(s) | 1809, 2423, 3090, 3573, 5373, 5958 |
| BstNSI | RCATGY | 3 cut(s) | 2374, 2469, 4676 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1338 |
| BstSFI | CTRYAG | 1 cut(s) | 2317 |
| BstSLI | GKGCMC | 5 cut(s) | 1145, 1279, 2308, 4459, 5745 |
| BstUI | CGCG | 4 cut(s) | 106, 663, 2670, 4299 |
| BstV2I | GAAGAC | 5 cut(s) | 492, 546, 639, 1010, 5376 |
| BstX2I | RGATCY | 5 cut(s) | 20, 974, 1433, 2810, 3637 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 512, 1073, 4597, 4663 |
| BstYI | RGATCY | 5 cut(s) | 20, 974, 1433, 2810, 3637 |
| Bsu15I | ATCGAT | 1 cut(s) | 5037 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1590, 3387 |
| BsuI | GTATCC | 1 cut(s) | 4476 |
| BsuTUI | ATCGAT | 1 cut(s) | 5037 |
| BtgI | CCRYGG | 3 cut(s) | 54, 631, 3266 |
| BtsI | GCAGTG | 3 cut(s) | 1138, 2157, 2676 |
| BtuMI | TCGCGA | 1 cut(s) | 4299 |
| BveI | ACCTGC | 4 cut(s) | 2941, 4363, 4836, 5389 |
| CaiI | CAGNNNCTG | 8 cut(s) | 23, 239, 893, 1511, 2576, 3257, 5839, 5974 |
| CfoI | GCGC | 6 cut(s) | 108, 1866, 2676, 3827, 4596, 5818 |
| Cfr10I | RCCGGY | 2 cut(s) | 688, 5611 |
| ClaI | ATCGAT | 1 cut(s) | 5037 |
| CseI | GACGC | 4 cut(s) | 3135, 3392, 3822, 5158 |
| CsiI | ACCWGGT | 1 cut(s) | 4102 |
| CspAI | ACCGGT | 2 cut(s) | 688, 5611 |
| DraI | TTTAAA | 2 cut(s) | 1089, 1684 |
| DraIII | CACNNNGTG | 3 cut(s) | 335, 383, 2873 |
| EaeI | YGGCCR | 4 cut(s) | 1842, 3244, 4390, 4952 |
| Eam1104I | CTCTTC | 9 cut(s) | 1573, 1716, 2373, 3546, 3978, 4071, 4996, 5263, 5523 |
| EarI | CTCTTC | 9 cut(s) | 1573, 1716, 2373, 3546, 3978, 4071, 4996, 5263, 5523 |
| EciI | GGCGGA | 2 cut(s) | 90, 2823 |
| Eco130I | CCWWGG | 9 cut(s) | 54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5768 |
| Eco147I | AGGCCT | 1 cut(s) | 2632 |
| Eco24I | GRGCYC | 2 cut(s) | 4066, 5708 |
| Eco32I | GATATC | 1 cut(s) | 3075 |
| Eco57I | CTGAAG | 7 cut(s) | 1419, 1458, 3089, 3474, 4349, 4904, 5505 |
| Eco81I | CCTNAGG | 2 cut(s) | 1590, 3387 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2016, 2487, 4550 |
| EcoRI | GAATTC | 2 cut(s) | 2074, 5482 |
| EcoRV | GATATC | 1 cut(s) | 3075 |
| EcoT14I | CCWWGG | 9 cut(s) | 54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5768 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 462 |
| EcoT38I | GRGCYC | 2 cut(s) | 4066, 5708 |
| ErhI | CCWWGG | 9 cut(s) | 54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5768 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 123, 155, 1443, 1475, 3359, 3391, 3952, 3984 |
| FauI | CCCGC | 5 cut(s) | 153, 656, 1132, 3927, 4859 |
| FauNDI | CATATG | 1 cut(s) | 5449 |
| FbaI | TGATCA | 2 cut(s) | 268, 2788 |
| FblI | GTMKAC | 2 cut(s) | 361, 1692 |
| FriOI | GRGCYC | 2 cut(s) | 4066, 5708 |
| FspAI | RTGCGCAY | 2 cut(s) | 2675, 4595 |
| FspI | TGCGCA | 3 cut(s) | 2675, 4595, 5817 |
| GlaI | GCGC | 6 cut(s) | 107, 1865, 2675, 3826, 4595, 5817 |
| GsaI | CCCAGC | 3 cut(s) | 2016, 4483, 4757 |
| GsuI | CTGGAG | 7 cut(s) | 2427, 2736, 3123, 4278, 4341, 5258, 5355 |
| HaeII | RGCGCY | 2 cut(s) | 1867, 3828 |
| HapII | CCGG | 7 cut(s) | 437, 689, 2805, 4331, 4796, 5093, 5612 |
| HgaI | GACGC | 4 cut(s) | 3135, 3392, 3822, 5158 |
| HhaI | GCGC | 6 cut(s) | 108, 1866, 2676, 3827, 4596, 5818 |
| Hin1I | GRCGYC | 3 cut(s) | 3146, 3833, 5169 |
| Hin6I | GCGC | 6 cut(s) | 106, 1864, 2674, 3825, 4594, 5816 |
| HinP1I | GCGC | 6 cut(s) | 106, 1864, 2674, 3825, 4594, 5816 |
| HincII | GTYRAC | 7 cut(s) | 70, 362, 923, 1333, 1993, 4872, 5173 |
| HindII | GTYRAC | 7 cut(s) | 70, 362, 923, 1333, 1993, 4872, 5173 |
| HindIII | AAGCTT | 1 cut(s) | 1457 |
| HpaII | CCGG | 7 cut(s) | 437, 689, 2805, 4331, 4796, 5093, 5612 |
| Hpy99I | CGWCG | 1 cut(s) | 5266 |
| HpyCH4IV | ACGT | 1 cut(s) | 1215 |
| HpySE526I | ACGT | 1 cut(s) | 1215 |
| Hsp92I | GRCGYC | 3 cut(s) | 3146, 3833, 5169 |
| HspAI | GCGC | 6 cut(s) | 106, 1864, 2674, 3825, 4594, 5816 |
| KflI | GGGWCCC | 1 cut(s) | 2016 |
| Kpn2I | TCCGGA | 1 cut(s) | 4330 |
| KpnI | GGTACC | 1 cut(s) | 4103 |
| Ksp22I | TGATCA | 2 cut(s) | 268, 2788 |
| LguI | GCTCTTC | 3 cut(s) | 3978, 4071, 5523 |
| MabI | ACCWGGT | 1 cut(s) | 4102 |
| MaeII | ACGT | 1 cut(s) | 1215 |
| MfeI | CAATTG | 4 cut(s) | 117, 954, 2328, 5376 |
| MflI | RGATCY | 5 cut(s) | 20, 974, 1433, 2810, 3637 |
| MhlI | GDGCHC | 7 cut(s) | 1145, 1279, 2308, 4066, 4459, 5708, 5745 |
| MlsI | TGGCCA | 3 cut(s) | 1844, 3246, 4392 |
| MluI | ACGCGT | 1 cut(s) | 2668 |
| MluNI | TGGCCA | 3 cut(s) | 1844, 3246, 4392 |
| MmeI | TCCRAC | 7 cut(s) | 783, 1572, 2082, 3797, 4207, 4702, 4829 |
| Mox20I | TGGCCA | 3 cut(s) | 1844, 3246, 4392 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 462 |
| MroI | TCCGGA | 1 cut(s) | 4330 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1017, 4177 |
| MscI | TGGCCA | 3 cut(s) | 1844, 3246, 4392 |
| MslI | CAYNNNNRTG | 5 cut(s) | 9, 2618, 3798, 4595, 5073 |
| Msp20I | TGGCCA | 3 cut(s) | 1844, 3246, 4392 |
| MspA1I | CMGCKG | 7 cut(s) | 1139, 1289, 2012, 2143, 4618, 4951, 5324 |
| MspI | CCGG | 7 cut(s) | 437, 689, 2805, 4331, 4796, 5093, 5612 |
| MunI | CAATTG | 4 cut(s) | 117, 954, 2328, 5376 |
| Mva1269I | GAATGC | 7 cut(s) | 235, 1237, 2005, 3398, 3498, 4002, 5239 |
| MvnI | CGCG | 4 cut(s) | 106, 663, 2670, 4299 |
| NciI | CCSGG | 2 cut(s) | 2805, 5094 |
| NcoI | CCATGG | 2 cut(s) | 54, 3266 |
| NdeI | CATATG | 1 cut(s) | 5449 |
| NmeAIII | GCCGAG | 1 cut(s) | 134 |
| NruI | TCGCGA | 1 cut(s) | 4299 |
| NsbI | TGCGCA | 3 cut(s) | 2675, 4595, 5817 |
| NsiI | ATGCAT | 2 cut(s) | 6, 462 |
| NspI | RCATGY | 3 cut(s) | 2374, 2469, 4676 |
| NspV | TTCGAA | 4 cut(s) | 2493, 3279, 4093, 4988 |
| OliI | CACNNNNGTG | 1 cut(s) | 3798 |
| PaeI | GCATGC | 1 cut(s) | 2374 |
| PaqCI | CACCTGC | 3 cut(s) | 2941, 4836, 5389 |
| PceI | AGGCCT | 1 cut(s) | 2632 |
| PciSI | GCTCTTC | 3 cut(s) | 3978, 4071, 5523 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 4090 |
| PctI | GAATGC | 7 cut(s) | 235, 1237, 2005, 3398, 3498, 4002, 5239 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1017, 4177 |
| PflFI | GACNNNGTC | 2 cut(s) | 3124, 4567 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 3122, 3257, 4412, 4838 |
| PfoI | TCCNGGA | 3 cut(s) | 4069, 4273, 5092 |
| PinAI | ACCGGT | 2 cut(s) | 688, 5611 |
| PpuMI | RGGWCCY | 1 cut(s) | 2016 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1338 |
| PshBI | ATTAAT | 1 cut(s) | 1350 |
| PsiI | TTATAA | 1 cut(s) | 2541 |
| Psp5II | RGGWCCY | 1 cut(s) | 2016 |
| PspFI | CCCAGC | 3 cut(s) | 2012, 4479, 4753 |
| PspPPI | RGGWCCY | 1 cut(s) | 2016 |
| PstNI | CAGNNNCTG | 8 cut(s) | 23, 239, 893, 1511, 2576, 3257, 5839, 5974 |
| PsuI | RGATCY | 5 cut(s) | 20, 974, 1433, 2810, 3637 |
| PsyI | GACNNNGTC | 2 cut(s) | 3124, 4567 |
| PvuII | CAGCTG | 3 cut(s) | 1289, 2012, 5324 |
| RruI | TCGCGA | 1 cut(s) | 4299 |
| RseI | CAYNNNNRTG | 5 cut(s) | 9, 2618, 3798, 4595, 5073 |
| SalI | GTCGAC | 1 cut(s) | 360 |
| SapI | GCTCTTC | 3 cut(s) | 3978, 4071, 5523 |
| ScaI | AGTACT | 2 cut(s) | 3355, 5548 |
| SduI | GDGCHC | 7 cut(s) | 1145, 1279, 2308, 4066, 4459, 5708, 5745 |
| SexAI | ACCWGGT | 1 cut(s) | 4102 |
| SfcI | CTRYAG | 1 cut(s) | 2317 |
| SfuI | TTCGAA | 4 cut(s) | 2493, 3279, 4093, 4988 |
| SmiI | ATTTAAAT | 1 cut(s) | 1089 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 9, 2618, 3798, 4595, 5073 |
| SmlI | CTYRAG | 6 cut(s) | 129, 191, 1823, 3563, 5307, 5685 |
| SmoI | CTYRAG | 6 cut(s) | 129, 191, 1823, 3563, 5307, 5685 |
| SpeI | ACTAGT | 2 cut(s) | 1181, 3797 |
| SphI | GCATGC | 1 cut(s) | 2374 |
| SseBI | AGGCCT | 1 cut(s) | 2632 |
| SspI | AATATT | 1 cut(s) | 840 |
| StuI | AGGCCT | 1 cut(s) | 2632 |
| StyI | CCWWGG | 9 cut(s) | 54, 528, 681, 1647, 2555, 3266, 3959, 4393, 5768 |
| SwaI | ATTTAAAT | 1 cut(s) | 1089 |
| TaiI | ACGT | 1 cut(s) | 1218 |
| TaqII | GACCGA | 2 cut(s) | 721, 1058 |
| TatI | WGTACW | 7 cut(s) | 622, 1220, 1496, 3304, 3353, 4772, 5546 |
| TauI | GCSGC | 4 cut(s) | 4318, 4576, 4672, 4954 |
| TspGWI | ACGGA | 4 cut(s) | 545, 1759, 3229, 4042 |
| Tth111I | GACNNNGTC | 2 cut(s) | 3124, 4567 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 3122, 3257, 4412, 4838 |
| VneI | GTGCAC | 1 cut(s) | 4455 |
| VspI | ATTAAT | 1 cut(s) | 1350 |
| XapI | RAATTY | 9 cut(s) | 185, 221, 948, 2074, 3411, 4279, 5482, 5674, 5719 |
| XbaI | TCTAGA | 1 cut(s) | 3088 |
| XceI | RCATGY | 3 cut(s) | 2374, 2469, 4676 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 61, 3254 |
| XmaJI | CCTAGG | 1 cut(s) | 2555 |
| XmiI | GTMKAC | 2 cut(s) | 361, 1692 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1017, 4177 |
| ZrmI | AGTACT | 2 cut(s) | 3355, 5548 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 462 |