Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Reverse (-)

21707128 .. 21721053

Gene Structure 13926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6327 bp

ATGCTGCAGTGCTTGGGTTGCTGGGATTGGTTTTCAAGGGTGGTGGTGCGGCTGTGTGTCTACTCTTGGCGGAGGTCCTCGAGGAGTGCTCGGATTTTGGAGGGACCAAAATTATACGCTCACAGTTTCGAGATTCAGACTCTCTCTCTCTCCGCAACCCTTCCATGTCTGACATTTGCACCCAGAGATTTTATAGAATTTGGATTAGATGGGAGATTAAAGGTTGCGGGCATTAAAGTCGGAATGCATGGATGTGGCTCAGGGTCTGCTCTCCTAGTAAATGCAGAGGTGGATTCCATGGGTGGAGTGGTTGACGGCGGAGTTGGTGTTGGTTTGAAAACATCTCCGCGCCGAGCAGCAATTGAGAAGGCTCAAGCAGAGCTTAGACAGGAATATGATGTGCGGGAGGAAAGGAGAAGGGAGCTAGAATTTCTTGAGAAAGGTGGCAATCCTTTGGACTTCAAATTTGGGAATGCAGCTTCTGTTAGTGTCCAGTCTACTTCCCTCACTGATCAGCATCCAGAACAGTTTGTGACCAGTGAAGCAAAAGGTAGTTTTGCATTGACTGCATCACCTCGTGGGGACTCTGTCGAAAGTAGTGGTCGACCAGAGGTTCCTACACTTTGTGAACCCAACAGTGCTGATAATCTCTTACTTTTTGATGGGGACAATGATACACCGGAAGGGGAGAGGAAATCTATGCATATTAGTAGAAGAAATAAAATTGCTCCATCAGAACAGTCTTCCCAGATGGATGGGACTCAAAATGCCAAGGAATCAGAAGACTCAGCGATTTTCCGTCCTTATGCTCGAAGGAACAGGTCCAGACCAAATCGTGATGGTACTCGTTCAAGTTCAACTGATGTACAGGGTCGTGGTGGGCAAGGGTCTTCATTACCTTGTCGCGGGACGTTAAAGAATCCCAAGGGACCGGTATCTGAAACAAACAACCAAAAGGACCAGAATATACCTTCGGTCACTAATCTAAAGACTGTGAAGTCTAATGGTGATTTTGCTCCTAGGGTTGCAACTTCTGATAATCAGTTGGATATGGACTTTGATGGGGTGCAGGCTCCTGAAATATTTACTGGTCCAGCAAAAGATAGTCCTGAAAGAAAATTGGATGTTACAGCTACTGAAAGTTTGAAAGAGAGCCAACATAGTCAACCATCTCAGACTGATACTCAGGAAATTCCAATTGCTGTAGTTTCGGGGAGATCTGATGAGAGGGAGCTGTTAGCTTCGTCTGTTCTTGAATGTCTTCCTTGTGAAGCTACTACAAGGACCGAAATTGATATTAGTTCTGTCCAGGTGAATGGATTTAGTAATTTAAATAGAGAGAGTAAAAGTGTACCAAATGAAGGTCAAATTAGCAGTGCAGCGGGCACGAAGGGGTTAGATTCAGAATCTTCTTGTACCCAAACTAGTGTAGGATTAGATGTAAATAATGATACTGACGTATGTACTACAAGGAATGCTCATAATGCAAATATCATGGAAACATCAGATGTTGATGGGGCACAAAATCCAGCTGGTGATGAAATGTTACTAGAAAAGAATGAAAGCAGAGCTGTTGACAGTAGTCCCATGATTAATGATCCTCATGCTTCTGATTTTCGGAACAATCGCTCAGGCAATACTGAAGTGAAAGTTGAGGAAGATATGAACGAAAGTAGATCTGAAGTGCGTAATGAAGTAAAGCTTCATCCAAACACTGAGGGAGAGCAACAAAGTGGTTGCACAGTATCAGAAGCTGAAAAGAAACTGGATGATGTGGTGGATAATGGTTCCAACATCAAGAAAGAGAACTCTTCTGGCAGACCCCAGACTCCTCAGGATTTTTCTATGTGTGAGCTTCCTGAAACTATTTTGTCAGGGATAGACTCTGTCAAGGGTTCAGACTGTCAGACTTCTAGTAGTCACTTTAAAGTGGTAGACAAGGCACATGAAGATTCTATTTTGGAAGAGGCTCGGATGATAGAGGCTAAGCGTAAGAGGATTGCAGAATTATCCGTTCGTTCTTTACCCTCGGAGAATCACCGAAAGTCTCAGTGGGATTTTGTCCTTGAGGAAATGTCGTGGTTGGCCAATGATTTTGCTCAGGAGCGCCTTTGGAAGCTAACTGCTGCTGCTCAAATATGCCATCGTGTTGCTTTTACTTCACGGTTGAGAATTGAAGAGCAACAACAACAATGGGGGATTAAAAAAGTGGCTCATACCCTGGCAAATGCTGTCAACCAATTTTGGCATTCAGCTGGGACCCTTTTGTATGCTGATGATTCAAGTGATTGTCACAACATCACCAAGAACAATTTGAATTCGAGCAAAGAGCCTTGCAAAGAGTTGGAGCTACAATGGAGCAACAACTTTTCACTTTCTATGCAGCGGTATGCAGTGAGATTTTTGAAGTATAACAACTCTCTTGGTCCTCAACTGCAAGCACAAGCTCCTGCTACTCCTGAGAGATTGTCTGATTTAGGCATTACAGAAATGTCATGGGAGGACCATCTTACAGAAGAAAACCTCTTTTATGCAGTTCCATCTGGGGCACTGGAAACCTACAGAAGATCAATTGAATCTCATTTGGTTCAGTGTGAGAGAACTAGCAGTAGCATGCAAGAAGAGGTTGATACATCCACGTATGAGGCTGGAGCTGAGTTTGATAGTCGAGAGACTTCTGCATACGATGAGGATGAAGGAGAAACATGCACCGATTATTTGCCTGGGGCCTTTGAAGGTAGCAAGTCATCAACATTTAGTCAGAAGAAGCGGAAGTATTATAAGTCATATAATCCTAGGACACACGAAGCAGGAGCTGATTTTCCCTATGGACAAACAGCTAATCAACAGTCCATGTTGATGGGGAAAAGGCCTGCTAGTCTTAATGTTGGTTCAATCCCAACAAAACGCGTGCGCACTGCTTCCAGGCAGAGGGTTGTTAGTCCATTTGGTGCTGGAGCTACTGGGAATGTTCAGGCTCAAATTAAGACAGATGCTTCTAGTGGAGATACTAATTCTTTTCAGGATGATCAGAGTACCTTACCTGGCGGATCCCAGTTCCCTAGAAGTATGGAGGTGGAGTCTGTTCGTGATTTTGAAAAGCATCCACAATGTGACTATGCAGAAACATCAAAGCATAAAAAGAAGAAGAAGGCAAAACATCTGGGTTCCGCTTATGACCAAGTATGGCAGATGGATTCACCTACTCATAATGAGCAGAGGGATCATTCAAAAAAGAGATTAGAAAGTCATCATTTTGAGTCCAATGGAACAATTGGTTTATATGGGCAACATAATGCAAAGAGGCTGAAGATATCAAAACAGTCTGTAGACAATACTTATGACGGTATAACTCCAATGACTGGGTCCATTTCTTCTCCAGTGGCGTCCCAAATGAGTAATATGACCAATCCGAGTAAATTGATGAAGTTGATCGGTGGTCGGGACAAGGGACGGAAAGCTAAATCAATGAAGATGCCTGTTGGGCAGCCAGGTTCTGGAAGTCCATGGTCACTATTCGAAGATCAGGCACTTGTTGTTCTTGTACATGATATGGGTCCAAATTGGGAACTCATAAGTGATGCTATCAACAGTACTCTGCACCTAAAGTGTATCTTCCGCAAGCCTAAGGAATGCAAGGAGCGTCACAAAATTTTAATGGATTTGAATACTGGTGATGGGGCTGACAGTGCTGAAGATTCAGGGTCATCACAGCCTTATCCATCTACAATCCCTGGCATTCCAAAGGGAAGTGCCAGGCAGTTATTTCAACGCTTGCAAGAGCCAATGGAAGAGGACACTCTCAAGTCTCATTTTGAAAGAATAATTAAGATTGGGCAGAAGCATCATTATAGGAGGAGTCAGAGTGATAACCAGGATCCAAAACAAGTAACAACAGTCCACAATTCTCATGTTATCGCTCTTTCCCAAGTATGTCCGAATAACCTGAATGGAGTTATTCTAACGCCTCTTGATCTCTGTGATGCCACATCATCAAGCCCAGATGTTCTTCCCACTGCATATCAAGGTTCTCACACTAGTGGCTTACCAATGGCAAATCAGGGCGCTATGGCGTCATTACTGCCCTCTGGGCCAAATGCCTCATTACAGGGAACTTCTGGTATGGTTCTTGGTAGCAACTTGTCATCACCATCTGGCCCACTTAGTGCGACAGTCAGGGATGGTAGGTACGGTGGTCCAAGGGCATCTACTTTACCAGTTGAAGAGCAGCAAAGAATGCAACACTACAATCAAATGTTATCCGGTAGAAACATTCAGCAGTCCAGCTTGTCTGTACCTGGGGCTCTTCCAGGAGGTACTGATCGTGGTGTCCGAATGGTACCTGGTGCAAATGGTATGGGCATGATGTGTGGGATGAATAGAAGCACAATGTCAAGGCCAGGGTTTCAGGGAATGGCTTCTTCCTCGATGCTGAATACTGGGAGTATGCTTTCATCCAGTATGGTTGGAATACCAAGTCCTGTAAATATGCACTCTGGAGCTGGTTCTGGTCCAGGAAATTTGATGTTAAGACCTCGCGAGGGTCACATGATGCGGCCTGCCCATAATCCGGATCACCAAAGGCAACTTATGGCTCCAGAGCTTCAGATGCAGGTCACGCAAGGGAATGGCCAAGGTATTGCTCCGTTCAATGGGTTGAGTTCTGGCTTTCCTAGTCAGACAACTCCATCAGGTGCACAAATGTATCCAGGCCATCCCCAGCAGCAACATCAGTTATCCCCACAACAATCTCATGCAGTCGGCAGCCCTCATCACCCTCATCTTCAAGGCCCCAATCATGTGACAGGGTCGCCGCAGCAAGCCTATGCCATGCGCATGGCTAAAGAAAGGCACCACCTGCATCAACAGCGGTTTTTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTTGCATCATCTAATTCTTTGGTGCCGCATGTCCAACCACAGGCCCAACTCCCCATTTCTTCAACTTTGCAAAATAGTTCCCAGATTCAGTCACAAAGTTCACCTCACCCAGCATCTATGCCCCCTGGTACACCTTCTTCCCCAATGACTCCGGTATCATCCCAGCACCAGCAGAAACATCACCTGCCACCTCATGGGATGAGTCGGAATCCTGGTGCAAGCGGGTTGACTAATCAAATAGGGAAGCAACGACAAAGGCCACAACAACACCATCTTCAGCAATCTGGGAGGCACCACCCTCAGCAGCGGCCATTTGGGCAATCTCAGCAGCAGGCTAAACTTTCGAAGGGAATGGGAAGAGGGAATCCAATGGTGCATCAAAACCTTGCCATTGATCCTATAAACATCTCCATTGATCCATCTCATCTGAATGGGCTTTCGATGCCTCCGGGAAGTCAAGCTCTGGAGAAAGGAGAACAGATCATGCAGTTAATGCAAGGTCAAGCTGCATATTCGGGGTCTGGCGTCAACCCAGTAACATCAAAACCATTGGTTCCTCAATCATCAAACAACTCTCCGATGCAGCAAAAGTTGCATTCTAGCTCAGCTACCTCTTCGACGAAGCAACTCCAGCAAAAGCCATCTCATTCTGATAACAGCACTCAAGGCCAGGCACCAGCTGTTCCTTCTGGTCATGCAATATCAGCTTCACATCAATCTGTGTCTCCAGCAATTGTGTCTTCCAATCACCAGCAGGTGCAGCCACAGCAACAGCAACAGAAGCAAGCTAATCAGACTCAGCCATATGTTCAGAGAGTCCAGCAGAATCGTCAAGTGAATTCGGAGCTTCCAAGCAAGCCTCCAAATGATTTAGCTTCAGCCGAAGAGCAGCCTGTGAATAGTACTTCTCTGATCGGTTCGAGCATGGCAATTCCTCAGTCCTCTATTGATTCGTCTAATGTACCGGTTGCTTCTGGCATTACTCAATGGAAATCATCAGAAGCAGTATATGATTCTAATCTGCCAAATTCAACAGCTCAAGAGGGTTCACTTGGGAGCCCATCACCAACAAATTCATCTGGGAATGAGCCAGTGCCCCCCTTTAGTCAAGGTTTAGGCCCAAGGCAGTTATCTGGTAACTTTGCCTCTCATGGACATATTGCTGGTGCGCAATGGCAGCAGAAGCAGCTACTGCAAAAGTCTCCTTCGCTACCACCCCCGTCCCAACAACTCTACGAGCAACAAGAGCAACAGCAGCAGCAGGAACAAGAATCACCCCAACATCAACTGCCTTTGCCACAGCAGTCTCAGCAACAAATGCAGCATCTGCCAGCAGCGCAAGGTGGGTTGGATCCGCATGCCCTTGTTACACAGTGTACAGATGAAGCTGATTATTCCATGAGGGCATCAACGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

2109

Amino Acids

229.9

Weight (kDa)

6.46

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_6	PF13921	1170 - 1218	3.5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2781
AarI	CACCTGC	3 cut(s)	4866, 5100, 5653
AasI	GACNNNNNNGTC	1 cut(s)	997
AbsI	CCTCGAGG	1 cut(s)	79
Acc16I	TGCGCA	3 cut(s)	2915, 4835, 6078
Acc36I	ACCTGC	4 cut(s)	4603, 4866, 5100, 5653
Acc65I	GGTACC	1 cut(s)	4339
AccB1I	GGYRCC	5 cut(s)	4339, 4851, 4930, 5199, 5581
AccB7I	CCANNNNNTGG	3 cut(s)	3362, 3497, 5102
AccI	GTMKAC	5 cut(s)	60, 497, 604, 1935, 3330
AccII	CGCG	4 cut(s)	349, 906, 2910, 4539
AccIII	TCCGGA	1 cut(s)	4570
AcoI	YGGCCR	3 cut(s)	2085, 4630, 5216
AcuI	CTGAAG	7 cut(s)	1662, 1701, 3329, 3714, 4589, 5168, 5769
AcyI	GRCGYC	3 cut(s)	3386, 4073, 5433
AdeI	CACNNNGTG	4 cut(s)	578, 626, 3113, 4166
AflIII	ACRYGT	1 cut(s)	2908
AgeI	ACCGGT	2 cut(s)	931, 5872
AhlI	ACTAGT	2 cut(s)	1424, 4037
AleI	CACNNNNGTG	1 cut(s)	4038
Alw21I	GWGCWC	2 cut(s)	91, 4699
Alw26I	GTCTC	6 cut(s)	2052, 2666, 3813, 5637, 6114, 6219
Alw44I	GTGCAC	1 cut(s)	4695
AlwNI	CAGNNNCTG	8 cut(s)	266, 482, 1136, 1754, 2816, 3497, 6100, 6235
Ama87I	CYCGRG	1 cut(s)	79
Aor13HI	TCCGGA	1 cut(s)	4570
ApaLI	GTGCAC	1 cut(s)	4695
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AseI	ATTAAT	1 cut(s)	1593
AsiGI	ACCGGT	2 cut(s)	931, 5872
Asp700I	GAANNNNTTC	2 cut(s)	1260, 4417
Asp718I	GGTACC	1 cut(s)	4339
AspA2I	CCTAGG	2 cut(s)	1019, 2795
AspLEI	GCGC	7 cut(s)	351, 2109, 2916, 4067, 4836, 6079, 6247
AsuC2I	CCSGG	1 cut(s)	5358
AsuII	TTCGAA	2 cut(s)	3519, 5252
AvaI	CYCGRG	1 cut(s)	79
AvrII	CCTAGG	2 cut(s)	1019, 2795
AxyI	CCTNAGG	2 cut(s)	1833, 3627
BaeGI	GKGCMC	5 cut(s)	1388, 1522, 2551, 4699, 6006
BaeI	ACNNNNGTAYC	8 cut(s)	1443, 1476, 4180, 4213, 4688, 4721, 5046, 5079
BalI	TGGCCA	2 cut(s)	2087, 4632
BamHI	GGATCC	3 cut(s)	3050, 3877, 6259
BanI	GGYRCC	5 cut(s)	4339, 4851, 4930, 5199, 5581
BanII	GRGCYC	2 cut(s)	4306, 5969
BarI	GAAGNNNNNNTAC	2 cut(s)	5029, 5061
BauI	CACGAG	1 cut(s)	576
BbsI	GAAGAC	5 cut(s)	735, 789, 882, 1253, 5640
Bbv12I	GWGCWC	2 cut(s)	91, 4699
BbvCI	CCTCAGC	1 cut(s)	5208
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BciVI	GTATCC	1 cut(s)	4716
BclI	TGATCA	2 cut(s)	511, 3028
BcnI	CCSGG	1 cut(s)	5358
BcoDI	GTCTC	6 cut(s)	2052, 2666, 3813, 5637, 6114, 6219
BcuI	ACTAGT	2 cut(s)	1424, 4037
BfmI	CTRYAG	4 cut(s)	5, 1203, 2560, 3327
BfoI	RGCGCY	2 cut(s)	2110, 4068
BfuAI	ACCTGC	4 cut(s)	4603, 4866, 5100, 5653
BfuI	GTATCC	1 cut(s)	4716
BglI	GCCNNNNNGGC	3 cut(s)	3484, 4090, 5224
BglII	AGATCT	2 cut(s)	1217, 1676
BlnI	CCTAGG	2 cut(s)	1019, 2795
BlpI	GCTNAGC	2 cut(s)	1986, 5512
BmcAI	AGTACT	2 cut(s)	3595, 5812
BmeT110I	CYCGRG	1 cut(s)	79
BmrI	ACTGGG	5 cut(s)	2973, 3049, 3372, 4449, 5435
BmuI	ACTGGG	5 cut(s)	2973, 3049, 3372, 4449, 5435
BoxI	GACNNNNGTC	1 cut(s)	1581
BpiI	GAAGAC	5 cut(s)	735, 789, 882, 1253, 5640
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	8 cut(s)	2670, 2976, 3363, 4518, 4581, 5393, 5522, 5619
Bpu10I	CCTNAGC	4 cut(s)	259, 1630, 2100, 5208
Bpu1102I	GCTNAGC	2 cut(s)	1986, 5512
Bpu14I	TTCGAA	2 cut(s)	3519, 5252
BpuEI	CTTGAG	6 cut(s)	357, 455, 2087, 3788, 5556, 5931
BpuMI	CCSGG	1 cut(s)	5358
BsaAI	YACGTR	1 cut(s)	2640
BsaBI	GATNNNNATC	2 cut(s)	516, 5925
BsaHI	GRCGYC	3 cut(s)	3386, 4073, 5433
BsaWI	WCCGGW	6 cut(s)	679, 931, 4262, 4570, 5059, 5872
BsaXI	ACNNNNNCTCC	6 cut(s)	312, 342, 3065, 3095, 3850, 3880
Bse118I	RCCGGY	2 cut(s)	931, 5872
Bse21I	CCTNAGG	2 cut(s)	1833, 3627
Bse3DI	GCAATG	1 cut(s)	6086
Bse8I	GATNNNNATC	2 cut(s)	516, 5925
BseAI	TCCGGA	1 cut(s)	4570
BseJI	GATNNNNATC	2 cut(s)	516, 5925
BseMI	GCAATG	1 cut(s)	6086
BseRI	GAGGAG	3 cut(s)	97, 1821, 3871
BseSI	GKGCMC	5 cut(s)	1388, 1522, 2551, 4699, 6006
BseYI	CCCAGC	5 cut(s)	21, 2255, 4719, 5017, 5070
BsgI	GTGCAG	4 cut(s)	1088, 1398, 3584, 5687
Bsh1236I	CGCG	4 cut(s)	349, 906, 2910, 4539
BshNI	GGYRCC	5 cut(s)	4339, 4851, 4930, 5199, 5581
BshTI	ACCGGT	2 cut(s)	931, 5872
BsiHKAI	GWGCWC	2 cut(s)	91, 4699
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	7 cut(s)	680, 932, 4263, 4571, 5060, 5357, 5873
BsmAI	GTCTC	6 cut(s)	2052, 2666, 3813, 5637, 6114, 6219
BsmI	GAATGC	8 cut(s)	249, 478, 1480, 2248, 3638, 3738, 4242, 5503
BsoBI	CYCGRG	1 cut(s)	79
Bsp119I	TTCGAA	2 cut(s)	3519, 5252
Bsp1286I	GDGCHC	8 cut(s)	91, 1388, 1522, 2551, 4306, 4699, 5969, 6006
Bsp13I	TCCGGA	1 cut(s)	4570
Bsp1407I	TGTACA	3 cut(s)	865, 3544, 6284
Bsp1720I	GCTNAGC	2 cut(s)	1986, 5512
Bsp19I	CCATGG	2 cut(s)	297, 3506
Bsp68I	TCGCGA	1 cut(s)	4539
BspEI	TCCGGA	1 cut(s)	4570
BspFNI	CGCG	4 cut(s)	349, 906, 2910, 4539
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	4 cut(s)	4603, 4866, 5100, 5653
BspQI	GCTCTTC	4 cut(s)	2172, 4218, 4311, 5787
BspT104I	TTCGAA	2 cut(s)	3519, 5252
BspT107I	GGYRCC	5 cut(s)	4339, 4851, 4930, 5199, 5581
BsrDI	GCAATG	1 cut(s)	6086
BsrFI	RCCGGY	2 cut(s)	931, 5872
BsrGI	TGTACA	3 cut(s)	865, 3544, 6284
BssAI	RCCGGY	2 cut(s)	931, 5872
BssNI	GRCGYC	3 cut(s)	3386, 4073, 5433
BssSI	CACGAG	1 cut(s)	576
BssT1I	CCWWGG	9 cut(s)	297, 771, 924, 1019, 2795, 3506, 4199, 4633, 6029
Bst2BI	CACGAG	1 cut(s)	576
BstACI	GRCGYC	3 cut(s)	3386, 4073, 5433
BstAPI	GCANNNNNTGC	8 cut(s)	566, 4237, 4858, 5401, 5500, 6100, 6226, 6235
BstAUI	TGTACA	3 cut(s)	865, 3544, 6284
BstBAI	YACGTR	1 cut(s)	2640
BstBI	TTCGAA	2 cut(s)	3519, 5252
BstDSI	CCRYGG	2 cut(s)	297, 3506
BstFNI	CGCG	4 cut(s)	349, 906, 2910, 4539
BstH2I	RGCGCY	2 cut(s)	2110, 4068
BstHHI	GCGC	7 cut(s)	351, 2109, 2916, 4067, 4836, 6079, 6247
BstMAI	GTCTC	6 cut(s)	2052, 2666, 3813, 5637, 6114, 6219
BstNSI	RCATGY	4 cut(s)	2617, 2709, 4940, 6269
BstPAI	GACNNNNGTC	1 cut(s)	1581
BstSFI	CTRYAG	4 cut(s)	5, 1203, 2560, 3327
BstSLI	GKGCMC	5 cut(s)	1388, 1522, 2551, 4699, 6006
BstUI	CGCG	4 cut(s)	349, 906, 2910, 4539
BstV2I	GAAGAC	5 cut(s)	735, 789, 882, 1253, 5640
BstX2I	RGATCY	5 cut(s)	1217, 1676, 3050, 3877, 6259
BstXI	CCANNNNNNTGG	4 cut(s)	755, 1316, 2860, 4837
BstYI	RGATCY	5 cut(s)	1217, 1676, 3050, 3877, 6259
Bsu36I	CCTNAGG	2 cut(s)	1833, 3627
BsuI	GTATCC	1 cut(s)	4716
BtgI	CCRYGG	2 cut(s)	297, 3506
BtsI	GCAGTG	5 cut(s)	14, 1381, 2400, 2916, 4014
BtuMI	TCGCGA	1 cut(s)	4539
BveI	ACCTGC	4 cut(s)	4603, 4866, 5100, 5653
CaiI	CAGNNNCTG	8 cut(s)	266, 482, 1136, 1754, 2816, 3497, 6100, 6235
CfoI	GCGC	7 cut(s)	351, 2109, 2916, 4067, 4836, 6079, 6247
Cfr10I	RCCGGY	2 cut(s)	931, 5872
CseI	GACGC	4 cut(s)	3375, 3632, 4062, 5422
CsiI	ACCWGGT	1 cut(s)	4342
CspAI	ACCGGT	2 cut(s)	931, 5872
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
DraI	TTTAAA	2 cut(s)	1332, 1927
DraIII	CACNNNGTG	4 cut(s)	578, 626, 3113, 4166
DrdI	GACNNNNNNGTC	1 cut(s)	997
DseDI	GACNNNNNNGTC	1 cut(s)	997
EaeI	YGGCCR	3 cut(s)	2085, 4630, 5216
EciI	GGCGGA	3 cut(s)	85, 333, 3063
Eco130I	CCWWGG	9 cut(s)	297, 771, 924, 1019, 2795, 3506, 4199, 4633, 6029
Eco147I	AGGCCT	1 cut(s)	2872
Eco24I	GRGCYC	2 cut(s)	4306, 5969
Eco32I	GATATC	1 cut(s)	3315
Eco57I	CTGAAG	7 cut(s)	1662, 1701, 3329, 3714, 4589, 5168, 5769
Eco81I	CCTNAGG	2 cut(s)	1833, 3627
Eco88I	CYCGRG	1 cut(s)	79
EcoO109I	RGGNCCY	4 cut(s)	75, 2259, 2727, 4790
EcoRI	GAATTC	2 cut(s)	2317, 5746
EcoRV	GATATC	1 cut(s)	3315
EcoT14I	CCWWGG	9 cut(s)	297, 771, 924, 1019, 2795, 3506, 4199, 4633, 6029
EcoT22I	ATGCAT	2 cut(s)	249, 705
EcoT38I	GRGCYC	2 cut(s)	4306, 5969
ErhI	CCWWGG	9 cut(s)	297, 771, 924, 1019, 2795, 3506, 4199, 4633, 6029
FalI	AAGNNNNNCTT	6 cut(s)	366, 398, 1686, 1718, 3599, 3631
FauI	CCCGC	5 cut(s)	220, 396, 899, 1375, 5123
FauNDI	CATATG	1 cut(s)	5713
FbaI	TGATCA	2 cut(s)	511, 3028
FblI	GTMKAC	5 cut(s)	60, 497, 604, 1935, 3330
FriOI	GRGCYC	2 cut(s)	4306, 5969
FspAI	RTGCGCAY	2 cut(s)	2915, 4835
FspI	TGCGCA	3 cut(s)	2915, 4835, 6078
GlaI	GCGC	7 cut(s)	350, 2108, 2915, 4066, 4835, 6078, 6246
GsaI	CCCAGC	5 cut(s)	25, 2259, 4723, 5021, 5074
GsuI	CTGGAG	8 cut(s)	2670, 2976, 3363, 4518, 4581, 5393, 5522, 5619
HaeII	RGCGCY	2 cut(s)	2110, 4068
HapII	CCGG	7 cut(s)	680, 932, 4263, 4571, 5060, 5357, 5873
HgaI	GACGC	4 cut(s)	3375, 3632, 4062, 5422
HhaI	GCGC	7 cut(s)	351, 2109, 2916, 4067, 4836, 6079, 6247
Hin1I	GRCGYC	3 cut(s)	3386, 4073, 5433
Hin6I	GCGC	7 cut(s)	349, 2107, 2914, 4065, 4834, 6077, 6245
HinP1I	GCGC	7 cut(s)	349, 2107, 2914, 4065, 4834, 6077, 6245
HincII	GTYRAC	7 cut(s)	313, 605, 1166, 1576, 2236, 5136, 5437
HindII	GTYRAC	7 cut(s)	313, 605, 1166, 1576, 2236, 5136, 5437
HindIII	AAGCTT	1 cut(s)	1700
HpaII	CCGG	7 cut(s)	680, 932, 4263, 4571, 5060, 5357, 5873
Hpy99I	CGWCG	1 cut(s)	5530
HpyCH4IV	ACGT	3 cut(s)	911, 1458, 2639
HpySE526I	ACGT	3 cut(s)	911, 1458, 2639
Hsp92I	GRCGYC	3 cut(s)	3386, 4073, 5433
HspAI	GCGC	7 cut(s)	349, 2107, 2914, 4065, 4834, 6077, 6245
KflI	GGGWCCC	1 cut(s)	2259
Kpn2I	TCCGGA	1 cut(s)	4570
KpnI	GGTACC	1 cut(s)	4343
Ksp22I	TGATCA	2 cut(s)	511, 3028
LguI	GCTCTTC	4 cut(s)	2172, 4218, 4311, 5787
MabI	ACCWGGT	1 cut(s)	4342
MaeII	ACGT	3 cut(s)	911, 1458, 2639
MfeI	CAATTG	5 cut(s)	360, 1197, 2571, 3273, 5640
MflI	RGATCY	5 cut(s)	1217, 1676, 3050, 3877, 6259
MhlI	GDGCHC	8 cut(s)	91, 1388, 1522, 2551, 4306, 4699, 5969, 6006
MlsI	TGGCCA	2 cut(s)	2087, 4632
MluI	ACGCGT	1 cut(s)	2908
MluNI	TGGCCA	2 cut(s)	2087, 4632
MmeI	TCCRAC	8 cut(s)	220, 1026, 1815, 2325, 4447, 4966, 5093, 6237
Mox20I	TGGCCA	2 cut(s)	2087, 4632
Mph1103I	ATGCAT	2 cut(s)	249, 705
MroI	TCCGGA	1 cut(s)	4570
MroXI	GAANNNNTTC	2 cut(s)	1260, 4417
MscI	TGGCCA	2 cut(s)	2087, 4632
MslI	CAYNNNNRTG	5 cut(s)	252, 2858, 4038, 4835, 5337
Msp20I	TGGCCA	2 cut(s)	2087, 4632
MspA1I	CMGCKG	7 cut(s)	1382, 1532, 2255, 2386, 4870, 5215, 5588
MspI	CCGG	7 cut(s)	680, 932, 4263, 4571, 5060, 5357, 5873
MunI	CAATTG	5 cut(s)	360, 1197, 2571, 3273, 5640
Mva1269I	GAATGC	8 cut(s)	249, 478, 1480, 2248, 3638, 3738, 4242, 5503
MvnI	CGCG	4 cut(s)	349, 906, 2910, 4539
NciI	CCSGG	1 cut(s)	5358
NcoI	CCATGG	2 cut(s)	297, 3506
NdeI	CATATG	1 cut(s)	5713
NmeAIII	GCCGAG	1 cut(s)	377
NruI	TCGCGA	1 cut(s)	4539
NsbI	TGCGCA	3 cut(s)	2915, 4835, 6078
NsiI	ATGCAT	2 cut(s)	249, 705
NspI	RCATGY	4 cut(s)	2617, 2709, 4940, 6269
NspV	TTCGAA	2 cut(s)	3519, 5252
OliI	CACNNNNGTG	1 cut(s)	4038
PaeI	GCATGC	2 cut(s)	2617, 6269
PaeR7I	CTCGAG	1 cut(s)	79
PaqCI	CACCTGC	3 cut(s)	4866, 5100, 5653
PceI	AGGCCT	1 cut(s)	2872
PciSI	GCTCTTC	4 cut(s)	2172, 4218, 4311, 5787
PcsI	WCGNNNNNNNCGW	1 cut(s)	4330
PctI	GAATGC	8 cut(s)	249, 478, 1480, 2248, 3638, 3738, 4242, 5503
PdmI	GAANNNNTTC	2 cut(s)	1260, 4417
PflFI	GACNNNGTC	4 cut(s)	587, 1886, 3364, 4807
PflMI	CCANNNNNTGG	3 cut(s)	3362, 3497, 5102
PfoI	TCCNGGA	3 cut(s)	4309, 4513, 5356
PinAI	ACCGGT	2 cut(s)	931, 5872
Ppu21I	YACGTR	1 cut(s)	2640
PpuMI	RGGWCCY	2 cut(s)	75, 2259
PshAI	GACNNNNGTC	1 cut(s)	1581
PshBI	ATTAAT	1 cut(s)	1593
PsiI	TTATAA	1 cut(s)	2781
Psp5II	RGGWCCY	2 cut(s)	75, 2259
PspFI	CCCAGC	5 cut(s)	21, 2255, 4719, 5017, 5070
PspPPI	RGGWCCY	2 cut(s)	75, 2259
PspXI	VCTCGAGB	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	8 cut(s)	266, 482, 1136, 1754, 2816, 3497, 6100, 6235
PsuI	RGATCY	5 cut(s)	1217, 1676, 3050, 3877, 6259
PsyI	GACNNNGTC	4 cut(s)	587, 1886, 3364, 4807
PvuII	CAGCTG	3 cut(s)	1532, 2255, 5588
RruI	TCGCGA	1 cut(s)	4539
RseI	CAYNNNNRTG	5 cut(s)	252, 2858, 4038, 4835, 5337
SalI	GTCGAC	1 cut(s)	603
SapI	GCTCTTC	4 cut(s)	2172, 4218, 4311, 5787
ScaI	AGTACT	2 cut(s)	3595, 5812
SduI	GDGCHC	8 cut(s)	91, 1388, 1522, 2551, 4306, 4699, 5969, 6006
SexAI	ACCWGGT	1 cut(s)	4342
SfcI	CTRYAG	4 cut(s)	5, 1203, 2560, 3327
Sfr274I	CTCGAG	1 cut(s)	79
SfuI	TTCGAA	2 cut(s)	3519, 5252
SlaI	CTCGAG	1 cut(s)	79
SmiI	ATTTAAAT	1 cut(s)	1332
SmiMI	CAYNNNNRTG	5 cut(s)	252, 2858, 4038, 4835, 5337
SmlI	CTYRAG	7 cut(s)	79, 372, 434, 2066, 3803, 5571, 5946
SmoI	CTYRAG	7 cut(s)	79, 372, 434, 2066, 3803, 5571, 5946
SpeI	ACTAGT	2 cut(s)	1424, 4037
SphI	GCATGC	2 cut(s)	2617, 6269
SseBI	AGGCCT	1 cut(s)	2872
SspI	AATATT	1 cut(s)	1083
StuI	AGGCCT	1 cut(s)	2872
StyI	CCWWGG	9 cut(s)	297, 771, 924, 1019, 2795, 3506, 4199, 4633, 6029
SwaI	ATTTAAAT	1 cut(s)	1332
TaiI	ACGT	3 cut(s)	914, 1461, 2642
TaqII	GACCGA	2 cut(s)	964, 1301
TatI	WGTACW	6 cut(s)	865, 1463, 3544, 3593, 5810, 6284
TauI	GCSGC	5 cut(s)	52, 4558, 4816, 4936, 5218
TspGWI	ACGGA	4 cut(s)	788, 2002, 3469, 4635
Tth111I	GACNNNGTC	4 cut(s)	587, 1886, 3364, 4807
Van91I	CCANNNNNTGG	3 cut(s)	3362, 3497, 5102
VneI	GTGCAC	1 cut(s)	4695
VspI	ATTAAT	1 cut(s)	1593
XceI	RCATGY	4 cut(s)	2617, 2709, 4940, 6269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	79
XmaJI	CCTAGG	2 cut(s)	1019, 2795
XmiI	GTMKAC	5 cut(s)	60, 497, 604, 1935, 3330
XmnI	GAANNNNTTC	2 cut(s)	1260, 4417
ZrmI	AGTACT	2 cut(s)	3595, 5812
Zsp2I	ATGCAT	2 cut(s)	249, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.