Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002955

Physical Location & Seq

Genomic Coordinates Forward (+)

23609931 .. 23614386

Gene Structure 4456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0165300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGATTGGGAAGTGAAAAGTGAAATAAAAAACAATGAGAGTAAGAACATAGGGAAGCTTGTTACCATGTCGATTTATGTCGGGCCACTTTCATCCACTTCTAGGATGGCAAGCTGGTGCAGGAAATGTATATATTTGAAACTGAAATTGGAGAAGTTGGCAGCCGAGTACTATTCAAGGCAACATTGGAAGACAGAATGCTTTGGAACAATATGTGTATTGGCCTTTGATGTTCAAAAGCAATTGAACTCTGTTGTCCCAGATGTCAATCATACAACAGATATAGTCCAAGTACTGAAGTTTGAGGATCAATCAGACAGCACACAATATAAAACTTCAAAGCAAGCAGTGTTGTCTGAAGGCAGCACCTCAACTGCTGCGCAGCTGCGCATGGAATCTGCCGAGCCATCTGTCGAGCCATCACACAACAGTTATAACATATACCCGTTGCCTGTTTGTTTCTCAGACAACTGTGTTCCACTGTTGTCTGAATTTTCAACAGACAACGGCTCGCTCTACAACGGTGGCACTCCAAATCACACAACAGTTTTTGTCTGTCGTCTAATAAGTTTTTTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016604 GO:0016607 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071704 GO:0071840 GO:0097346 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1904949 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSA Myb_DNA-bind_6

Protein Analysis

193

Amino Acids

21.64

Weight (kDa)

6.08

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24870 AT3G24870 AT3G24870 AT3G24870 AT3G24880 AT3G24880 AT3G24880
fragaria_vesca	FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860 FvH4_2g18860
malus_domestica	MD05G1174400.v1.1 MD10G1163500.v1.1
prunus_persica	Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1 Prupe.8G201800_v2.0.a1
pyrus_communis	pycom05g16120 pycom10g14100
rosa_chinensis	RchiOBHm_Chr6g0284671
rosa_laevigata	RLG00000012732
rosa_multiflora	Rmu_co8337863.1_g000001 Rmu_sc0007474.1_g000006
rosa_roxburghii	Rroxscaffold_7G00184490
rosa_rugosa	Rorug06G0165200 Rorug06G0165200 Rorug06G0165300 Rorug06G0165400
rosa_samantha	Rh6AG278300 Rh6BG278300 Rh6CG280600 Rh6DG273300
rosa_wichuraiana	Rw6G023920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
Acc16I	TGCGCA	2 cut(s)	381, 389
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	491
AcuI	CTGAAG	2 cut(s)	317, 378
AfaI	GTAC	2 cut(s)	170, 294
AfiI	CCNNNNNNNGG	1 cut(s)	102
AgsI	TTSAA	6 cut(s)	139, 177, 236, 247, 339, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	3 cut(s)	58, 114, 385
AluI	AGCT	3 cut(s)	58, 114, 385
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	2 cut(s)	83, 222
ApeKI	GCWGC	5 cut(s)	161, 363, 377, 382, 385
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	382, 390
AspS9I	GGNCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	5 cut(s)	173, 364, 372, 375, 394
BccI	CCATC	3 cut(s)	100, 415, 427
BceAI	ACGGC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	5 cut(s)	162, 364, 378, 383, 386
BlsI	GCNGC	5 cut(s)	163, 365, 379, 384, 387
BmcAI	AGTACT	2 cut(s)	170, 294
BmgT120I	GGNCC	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	267
BseGI	GGATG	2 cut(s)	92, 111
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	477
BseXI	GCAGC	5 cut(s)	173, 364, 372, 375, 394
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	85, 224
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	2 cut(s)	85, 224
Bsp143I	GATC	1 cut(s)	307
BspANI	GGCC	2 cut(s)	85, 224
BspCNI	CTCAG	1 cut(s)	476
BspPI	GGATC	1 cut(s)	315
BssMI	GATC	1 cut(s)	307
Bst4CI	ACNGT	5 cut(s)	431, 473, 483, 524, 547
BstC8I	GCNNGC	3 cut(s)	112, 345, 512
BstDEI	CTNAG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	92, 111
BstHHI	GCGC	2 cut(s)	382, 390
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstV1I	GCAGC	5 cut(s)	173, 364, 372, 375, 394
BstV2I	GAAGAC	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	85, 224
BtsCI	GGATG	2 cut(s)	92, 111
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 479
Cac8I	GCNNGC	3 cut(s)	112, 345, 512
CfoI	GCGC	2 cut(s)	382, 390
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	169, 293
CviAII	CATG	2 cut(s)	67, 391
CviJI	RGCY	9 cut(s)	58, 85, 114, 164, 224, 385, 406, 418, 510
CviKI_1	RGCY	9 cut(s)	58, 85, 114, 164, 224, 385, 406, 418, 510
CviQI	GTAC	2 cut(s)	169, 293
DdeI	CTNAG	1 cut(s)	463
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	317, 378
FaeI	CATG	2 cut(s)	70, 394
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	66, 390
Fnu4HI	GCNGC	5 cut(s)	162, 364, 378, 383, 386
FokI	GGATG	2 cut(s)	79, 118
Fsp4HI	GCNGC	5 cut(s)	162, 364, 378, 383, 386
FspBI	CTAG	1 cut(s)	102
FspI	TGCGCA	2 cut(s)	381, 389
GlaI	GCGC	2 cut(s)	381, 389
GluI	GCNGC	5 cut(s)	162, 364, 378, 383, 386
HaeIII	GGCC	2 cut(s)	85, 224
HhaI	GCGC	2 cut(s)	382, 390
Hin1II	CATG	2 cut(s)	70, 394
Hin6I	GCGC	2 cut(s)	380, 388
HinP1I	GCGC	2 cut(s)	380, 388
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	395
Hpy188I	TCNGA	4 cut(s)	316, 358, 466, 490
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	5 cut(s)	431, 473, 483, 524, 547
HpyCH4V	TGCA	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	463
Hsp92II	CATG	2 cut(s)	70, 394
HspAI	GCGC	2 cut(s)	380, 388
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	4 cut(s)	100, 106, 273, 465
Lsp1109I	GCAGC	5 cut(s)	173, 364, 372, 375, 394
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	202
MfeI	CAATTG	1 cut(s)	242
MluCI	AATT	3 cut(s)	146, 242, 491
MnlI	CCTC	2 cut(s)	298, 379
MspA1I	CMGCKG	1 cut(s)	385
MunI	CAATTG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	203
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	70, 394
NmeAIII	GCCGAG	2 cut(s)	190, 427
NsbI	TGCGCA	2 cut(s)	381, 389
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	5 cut(s)	163, 365, 379, 384, 387
PsiI	TTATAA	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	2 cut(s)	170, 294
RsaNI	GTAC	2 cut(s)	169, 293
SatI	GCNGC	5 cut(s)	162, 364, 378, 383, 386
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	83
ScaI	AGTACT	2 cut(s)	170, 294
SetI	ASST	4 cut(s)	60, 116, 371, 387
Sse9I	AATT	3 cut(s)	146, 242, 491
SspMI	CTAG	1 cut(s)	102
TaaI	ACNGT	5 cut(s)	431, 473, 483, 524, 547
TaqI	TCGA	2 cut(s)	71, 414
TasI	AATT	3 cut(s)	146, 242, 491
TatI	WGTACW	2 cut(s)	168, 292
TfiI	GAWTC	1 cut(s)	395
TscAI	CASTG	2 cut(s)	354, 486
TseI	GCWGC	5 cut(s)	161, 363, 377, 382, 385
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	354, 486
XapI	RAATTY	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XspI	CTAG	1 cut(s)	102
ZrmI	AGTACT	2 cut(s)	170, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.