Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Reverse (-)

30846000 .. 30846733

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1209500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGTATGGTCATCTTCATTTGTTTATTCTCAAGATATAAAGACATGGGAATCTAAAAGAGTTGCTGCTTTGATATTCTATGTTTTTGTTACCTTGGTTTCTTGCCAAAGAATATATGTAGCAATTCGAGCACCTCTCCAATATCGTCAAAGAAAAGAGTTGACAGAGGCTTATATGGAGGCAGTGATTCCTGAACCATCTCCAATTAATGTTAGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

74

Amino Acids

8.63

Weight (kDa)

9.58

Isoelectric Point (pI)

66.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw21I	GWGCWC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	65
AseI	ATTAAT	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpuEI	CTTGAG	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
CviAII	CATG	1 cut(s)	45
CviJI	RGCY	1 cut(s)	170
CviKI_1	RGCY	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	48
FaiI	YATR	8 cut(s)	7, 38, 46, 81, 115, 117, 174, 176
FatI	CATG	1 cut(s)	44
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	50, 187
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	32, 191
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	48
LpnPI	CCDG	1 cut(s)	204
Lsp1109I	GCAGC	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	2 cut(s)	123, 204
MnlI	CCTC	3 cut(s)	144, 160, 172
MseI	TTAA	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	50, 187
PkrI	GCNGC	1 cut(s)	67
PshBI	ATTAAT	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	3 cut(s)	95, 136, 221
SgeI	CNNG	6 cut(s)	44, 57, 106, 114, 140, 203
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	123, 204
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	123, 204
TfiI	GAWTC	2 cut(s)	50, 187
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.