Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Forward (+)

34654047 .. 34668389

Gene Structure 14343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGAAGCAATACGAAGCCGAAATAAGAGAATGCGGGCCGGGGCACCTCATCCGGATCGCCTTCCTTATCAACAAGTATCTCTCCGATAACGAGGCTACATCTAAGCCTCCTCGCTCTTCTCCTAGTCTTCGATTCGAGCGCGAGAAAGTGTTGGACCATGAGAAGGTTCAAGTGGAGCAAGAGAAGACCAGGGTTCAGAAGTTGTTGAATGGGTTGCAGAACTCAATAAACGTTTACAATGCCACCACCAAATCTCCAAAGTTTCGAATGCGGCACCGAAACAAATGCACATGGCTCCTCGGTCTCGCCTATCAAATGGGTCTTCTACGTCAACTTCGGTGTCAATCTTCGAATCCATTGTCGGTGGCTAAAGCTTGGGATTATCAAAACCTGCAACTACGGACTCGATCACCAAGCTTCCTTGTAGAGATTCGATCTGTCCGAGCCAAGGTTGGAGTAGAAGTCGGCGTTGAGGGCGAATGCGATGGAGTCCAGCTCCTGCTTGAAATAGCCGATTTGAAGAAGAGAAAAGACTTGCCTCATGGGTTGATCGGAAAAATCTGTTCTGAATTGCTTGATGGTGGTGTGCGGTGGAGGAGGTGGCCGGAGCTCAAGATCTCCACCGTAGGAGAGCAAGCAGAGGGAAGGGAGAAATGGTTGGCCTCTGCAAACCCAAATGGGCCTGATGGGTTTTCTTGGGTGAGTACGGCTCGGTCTATACGCCGCAGTTTGGAGCAGTTCTGGTCCAATTTTGGTGACTCCGTGAAGAAGGAAACTGGGTTTGATTTGAAGGAGGTAAATGTGAAGGTGGGGGAGTATTTGGGGCAAGGTGGGGAAGGATTAAAGAGAGGTGGGACTAAGTTGGAACGGTTTAGGACCGAGTTAGTGCCCAAGTTTGTGAGTTGGAATCGGTGGGAAAGATGGAAGCTCTATGCCCAAGAACATCTATCGGCACCTCGATTCCGGCTAGTCGTGACATGTATGCCTATGATGGGTTGCTGCTGCAATTTTATAATGCAGCTCCACTATGAACATGAAAACCCTATCGGGCGAAAAATGTTGATCTTGTCAACAACACACACACTTGTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

365

Amino Acids

41.89

Weight (kDa)

9.59

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1016
Acc36I	ACCTGC	1 cut(s)	402
AccB1I	GGYRCC	3 cut(s)	45, 276, 955
AccII	CGCG	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	4 cut(s)	36, 274, 592, 727
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	605
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	4 cut(s)	166, 451, 733, 995
AflIII	ACRYGT	1 cut(s)	980
AgsI	TTSAA	5 cut(s)	173, 211, 509, 523, 793
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	6 cut(s)	377, 420, 499, 613, 931, 1024
AluI	AGCT	6 cut(s)	377, 420, 499, 613, 931, 1024
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	502
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	4 cut(s)	38, 605, 663, 683
ApeKI	GCWGC	3 cut(s)	1002, 1005, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	5 cut(s)	38, 157, 683, 747, 879
AsuC2I	CCSGG	1 cut(s)	42
AsuHPI	GGTGA	3 cut(s)	405, 715, 770
AsuII	TTCGAA	2 cut(s)	268, 353
AvaII	GGWCC	3 cut(s)	157, 747, 879
BaeGI	GKGCMC	2 cut(s)	48, 894
BanI	GGYRCC	3 cut(s)	45, 276, 955
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	3 cut(s)	122, 194, 317
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	989, 992, 1033
BccI	CCATC	5 cut(s)	482, 575, 683, 918, 988
BceAI	ACGGC	1 cut(s)	726
BcgI	CGANNNNNNTGC	2 cut(s)	270, 304
BciT130I	CCWGG	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	126, 971
BfuAI	ACCTGC	1 cut(s)	402
BglII	AGATCT	1 cut(s)	618
BisI	GCNGC	5 cut(s)	275, 727, 1003, 1006, 1022
BlsI	GCNGC	5 cut(s)	276, 728, 1004, 1007, 1023
Bme1390I	CCNGG	2 cut(s)	42, 193
Bme18I	GGWCC	3 cut(s)	157, 747, 879
BmgT120I	GGNCC	5 cut(s)	38, 157, 683, 747, 879
BmiI	GGNNCC	4 cut(s)	47, 278, 299, 957
BmrFI	CCNGG	2 cut(s)	42, 193
BmrI	ACTGGG	1 cut(s)	789
BmuI	ACTGGG	1 cut(s)	789
BpiI	GAAGAC	3 cut(s)	122, 194, 317
BplI	GAGNNNNNCTC	4 cut(s)	483, 515, 697, 729
Bpu14I	TTCGAA	2 cut(s)	268, 353
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	4 cut(s)	41, 192, 301, 450
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	6 cut(s)	241, 271, 450, 480, 644, 674
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 451, 733, 995
Bse1I	ACTGG	1 cut(s)	784
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	4 cut(s)	41, 192, 301, 450
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	4 cut(s)	166, 451, 733, 995
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	3 cut(s)	102, 290, 613
BseSI	GKGCMC	2 cut(s)	48, 894
BseXI	GCAGC	3 cut(s)	989, 992, 1033
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	4 cut(s)	40, 607, 665, 685
BshNI	GGYRCC	3 cut(s)	45, 276, 955
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	4 cut(s)	41, 55, 608, 967
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	4 cut(s)	166, 451, 733, 995
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	871
BsmI	GAATGC	3 cut(s)	38, 276, 488
BsnI	GGCC	4 cut(s)	40, 607, 665, 685
Bso31I	GGTCTC	1 cut(s)	311
Bsp119I	TTCGAA	2 cut(s)	268, 353
Bsp1286I	GDGCHC	3 cut(s)	48, 615, 894
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
BspACI	CCGC	4 cut(s)	36, 274, 592, 727
BspANI	GGCC	4 cut(s)	40, 607, 665, 685
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	47, 278, 299, 957
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	65
BspQI	GCTCTTC	1 cut(s)	124
BspT104I	TTCGAA	2 cut(s)	268, 353
BspT107I	GGYRCC	3 cut(s)	45, 276, 955
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	784
BssECI	CCNNGG	4 cut(s)	41, 192, 301, 450
BssMI	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	628, 873
Bst6I	CTCTTC	2 cut(s)	124, 521
BstBI	TTCGAA	2 cut(s)	268, 353
BstC8I	GCNNGC	2 cut(s)	38, 639
BstDEI	CTNAG	2 cut(s)	105, 861
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	6 cut(s)	60, 413, 440, 555, 621, 1068
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
BstMWI	GCNNNNNNNGC	1 cut(s)	477
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	984
BstSCI	CCNGG	2 cut(s)	40, 191
BstSLI	GKGCMC	2 cut(s)	48, 894
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	989, 992, 1033
BstV2I	GAAGAC	3 cut(s)	122, 194, 317
BstX2I	RGATCY	1 cut(s)	618
BstYI	RGATCY	1 cut(s)	618
BsuRI	GGCC	4 cut(s)	40, 607, 665, 685
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	38, 639
CaiI	CAGNNNCTG	1 cut(s)	502
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	5 cut(s)	38, 157, 683, 747, 879
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	5 cut(s)	161, 294, 545, 981, 1037
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	2 cut(s)	105, 861
DpnI	GATC	6 cut(s)	59, 412, 439, 554, 620, 1067
DpnII	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
EaeI	YGGCCR	1 cut(s)	605
Eam1104I	CTCTTC	2 cut(s)	124, 521
EarI	CTCTTC	2 cut(s)	124, 521
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	3 cut(s)	157, 747, 879
Eco53kI	GAGCTC	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	5 cut(s)	164, 297, 548, 984, 1040
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	5 cut(s)	160, 293, 544, 980, 1036
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	5 cut(s)	275, 727, 1003, 1006, 1022
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	5 cut(s)	275, 727, 1003, 1006, 1022
FspBI	CTAG	2 cut(s)	126, 971
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	5 cut(s)	275, 727, 1003, 1006, 1022
HaeIII	GGCC	4 cut(s)	40, 607, 665, 685
HapII	CCGG	4 cut(s)	41, 55, 608, 967
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	164, 297, 548, 984, 1040
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	2 cut(s)	335, 1074
HindII	GTYRAC	2 cut(s)	335, 1074
HindIII	AAGCTT	2 cut(s)	375, 418
HinfI	GANTC	8 cut(s)	135, 355, 406, 433, 492, 761, 910, 963
HpaII	CCGG	4 cut(s)	41, 55, 608, 967
HphI	GGTGA	3 cut(s)	405, 715, 770
Hpy166II	GTNNAC	3 cut(s)	238, 335, 1074
Hpy188I	TCNGA	5 cut(s)	88, 201, 446, 557, 571
Hpy188III	TCNNGA	3 cut(s)	55, 616, 976
Hpy8I	GTNNAC	3 cut(s)	238, 335, 1074
HpyAV	CCTTC	7 cut(s)	73, 160, 642, 766, 787, 802, 833
HpyCH4III	ACNGT	2 cut(s)	628, 873
HpyCH4IV	ACGT	2 cut(s)	234, 331
HpyCH4V	TGCA	6 cut(s)	220, 291, 397, 671, 1008, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	477
HpyF3I	CTNAG	2 cut(s)	105, 861
HpySE526I	ACGT	2 cut(s)	234, 331
Hsp92II	CATG	5 cut(s)	164, 297, 548, 984, 1040
HspAI	GCGC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	54
Kzo9I	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
LguI	GCTCTTC	1 cut(s)	124
LmnI	GCTCC	6 cut(s)	178, 303, 504, 610, 736, 1029
Lsp1109I	GCAGC	3 cut(s)	989, 992, 1033
MaeI	CTAG	2 cut(s)	126, 971
MaeII	ACGT	2 cut(s)	234, 331
MaeIII	GTNAC	2 cut(s)	758, 976
MalI	GATC	6 cut(s)	59, 412, 439, 554, 620, 1067
MboI	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
MboII	GAAGA	8 cut(s)	111, 122, 199, 317, 342, 535, 538, 781
MflI	RGATCY	1 cut(s)	618
MhlI	GDGCHC	3 cut(s)	48, 615, 894
MluCI	AATT	3 cut(s)	572, 751, 1009
MlyI	GAGTC	3 cut(s)	400, 501, 755
MmeI	TCCRAC	4 cut(s)	135, 436, 846, 887
MroI	TCCGGA	1 cut(s)	54
MseI	TTAA	1 cut(s)	845
MspI	CCGG	4 cut(s)	41, 55, 608, 967
MspR9I	CCNGG	2 cut(s)	42, 193
Mva1269I	GAATGC	3 cut(s)	38, 276, 488
MvaI	CCWGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	477
NciI	CCSGG	1 cut(s)	42
NdeII	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
NlaIII	CATG	5 cut(s)	164, 297, 548, 984, 1040
NlaIV	GGNNCC	4 cut(s)	47, 278, 299, 957
NmuCI	GTSAC	2 cut(s)	758, 976
NspI	RCATGY	1 cut(s)	984
NspV	TTCGAA	2 cut(s)	268, 353
PciI	ACATGT	1 cut(s)	980
PciSI	GCTCTTC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PctI	GAATGC	3 cut(s)	38, 276, 488
PfeI	GAWTC	5 cut(s)	135, 355, 433, 910, 963
PkrI	GCNGC	5 cut(s)	276, 728, 1004, 1007, 1023
PleI	GAGTC	3 cut(s)	400, 500, 755
PpsI	GAGTC	3 cut(s)	400, 500, 755
PscI	ACATGT	1 cut(s)	980
PsiI	TTATAA	1 cut(s)	1016
Psp124BI	GAGCTC	1 cut(s)	615
Psp1406I	AACGTT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	4 cut(s)	47, 278, 299, 957
PspPI	GGNCC	5 cut(s)	38, 157, 683, 747, 879
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	618
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	615
SapI	GCTCTTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	845
SatI	GCNGC	5 cut(s)	275, 727, 1003, 1006, 1022
Sau3AI	GATC	6 cut(s)	57, 410, 437, 552, 618, 1065
Sau96I	GGNCC	5 cut(s)	38, 157, 683, 747, 879
SchI	GAGTC	3 cut(s)	400, 501, 755
ScrFI	CCNGG	2 cut(s)	42, 193
SduI	GDGCHC	3 cut(s)	48, 615, 894
SfuI	TTCGAA	2 cut(s)	268, 353
SinI	GGWCC	3 cut(s)	157, 747, 879
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	3 cut(s)	572, 751, 1009
SsiI	CCGC	4 cut(s)	36, 274, 592, 727
SspMI	CTAG	2 cut(s)	126, 971
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	40, 191
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	628, 873
TaiI	ACGT	2 cut(s)	237, 334
TaqI	TCGA	7 cut(s)	133, 138, 268, 353, 409, 436, 961
TaqII	GACCGA	3 cut(s)	293, 705, 896
TasI	AATT	3 cut(s)	572, 751, 1009
TauI	GCSGC	2 cut(s)	277, 729
TfiI	GAWTC	5 cut(s)	135, 355, 433, 910, 963
Tru1I	TTAA	1 cut(s)	845
Tru9I	TTAA	1 cut(s)	845
TseFI	GTSAC	2 cut(s)	758, 976
TseI	GCWGC	3 cut(s)	1002, 1005, 1021
Tsp45I	GTSAC	2 cut(s)	758, 976
TspDTI	ATGAA	2 cut(s)	1047, 1053
TspGWI	ACGGA	2 cut(s)	418, 754
VpaK11BI	GGWCC	3 cut(s)	157, 747, 879
XceI	RCATGY	1 cut(s)	984
XspI	CTAG	2 cut(s)	126, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.