Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Forward (+)

32920909 .. 32921894

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGCCTCAAGTGCCGCTGTTCGAAGGTCCTCAACCCCAAGACTTGCTGGGAACAGAGAAGATTCACAGCTCAGGTGCTTGCGATGTCGAGTTCCCGGTTGTGCATCCTCCTTGGAGTTATCATTTGTCCGGGTGTCTTTGGTCATCTCTACCCTTATGGCCCAATTGTGGCTTTTGCTTTGCAGGTGAAGTTCAAGAGGATACCGGAACATGGCGTGAAAGACTTCAGAAATGGAAGGAGATCCTCCAAAAAGAAAAGTTAGCAGAACAGTTGGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

94

Amino Acids

10.76

Weight (kDa)

5.02

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	176
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	170, 213
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	29, 162
AsuC2I	CCSGG	2 cut(s)	98, 133
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	29
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	2 cut(s)	98, 133
BfuAI	ACCTGC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	98, 133
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	2 cut(s)	29, 162
BmrFI	CCNGG	2 cut(s)	98, 133
BmsI	GCATC	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	24
BpuMI	CCSGG	2 cut(s)	98, 133
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 213
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	170, 213
BseMII	CTCAG	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	98, 132, 207
BslI	CCNNNNNNNGG	2 cut(s)	170, 213
BsnI	GGCC	1 cut(s)	163
Bsp119I	TTCGAA	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	243, 277
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	86
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	238
BspT104I	TTCGAA	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	243, 277
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	273
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	246, 280
BstMBI	GATC	2 cut(s)	243, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	96, 131
BstX2I	RGATCY	2 cut(s)	243, 277
BstYI	RGATCY	2 cut(s)	243, 277
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	106
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	29, 162
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	4 cut(s)	7, 72, 163, 174
CviKI_1	RGCY	4 cut(s)	7, 72, 163, 174
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	2 cut(s)	245, 279
DpnII	GATC	2 cut(s)	243, 277
Eco130I	CCWWGG	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	1 cut(s)	216
FaiI	YATR	2 cut(s)	160, 214
FatI	CATG	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	17
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	3 cut(s)	98, 132, 207
Hin1II	CATG	1 cut(s)	216
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	3 cut(s)	98, 132, 207
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	231
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	20, 232
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	106, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	243, 277
LpnPI	CCDG	6 cut(s)	35, 60, 111, 145, 171, 220
LweI	GCATC	1 cut(s)	115
MalI	GATC	2 cut(s)	245, 279
MboI	GATC	2 cut(s)	243, 277
MboII	GAAGA	1 cut(s)	73
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	2 cut(s)	243, 277
MluCI	AATT	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	18, 42, 120, 193, 257
MroXI	GAANNNNTTC	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	3 cut(s)	98, 132, 207
MspR9I	CCNGG	2 cut(s)	98, 133
MunI	CAATTG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	13
NciI	CCSGG	2 cut(s)	98, 133
NdeII	GATC	2 cut(s)	243, 277
NlaIII	CATG	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	24
PaqCI	CACCTGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	18
PpuMI	RGGWCCY	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	29, 162
PspPPI	RGGWCCY	1 cut(s)	29
PsuI	RGATCY	2 cut(s)	243, 277
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	243, 277
Sau96I	GGNCC	2 cut(s)	29, 162
ScrFI	CCNGG	2 cut(s)	98, 133
SetI	ASST	4 cut(s)	31, 74, 79, 190
SfaNI	GCATC	1 cut(s)	115
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	96, 131
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	24, 90
TasI	AATT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.