Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Forward (+)

12555159 .. 12557927

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGAAGGTTCGGGTGGAGCAAGAGAAAACCGGGGTTCGAAGTTGTTGAATGGGTTGCGAACTCGATAAACGTTTACAATGCCGGTGGAAACCCCCGAGTTTCCAAAGTTTCGGATGCGGCACCGAAACAAATGCACATGGCTCCTCGGTCTCGCCTATCTAATGGGTCTTCTACGAAGGAAACTGGGTTTGATTTGAAGGAGGTGAATGTGAAGGTGGGGGAGTATTTGGGGCAAGCTAGGGAAGGATTAAAGAGAGGTGGGACCGAGTTGGAACGGTTTAGGACTGAGTTAGTGCCCGAGTTTACATGGGAACCTAAAAGAGTTGCTGCATTGGTTTTCTATGTTTTTATTGCCGTAGTTTCGTGCCAAAGAATATATGTAGCAATTCGAGCTCCTATCCAAGATCGCCGGAGGAAAGAGTTGACGGAGGCTTATATGGAGGCGGTGATTCCCGAGCCATCTCCGAGTAATGTTAGAAAGCTTAAGAAGAAGGATGCATGGGATGATGATCCGCAGCTACCTCGGGACAATGTAAAACAATTTATTGACAGTGATATAAAATTAAATCCGGAAGAAAAGAAGGAATTGAAAGAAGACCTGGGAATTTCTGGTGAAGTTCAAGAGGATACCGGAACATGGCGTGAAAGACTTCGAAATGGAAGGAGATCCTCCAAAAAGAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

229

Amino Acids

26.28

Weight (kDa)

9.7

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	121
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	3 cut(s)	119, 446, 515
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	2 cut(s)	506, 663
AcsI	RAATTY	1 cut(s)	606
AfiI	CCNNNNNNNGG	1 cut(s)	639
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	50, 199, 592, 623
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	4 cut(s)	239, 395, 484, 520
AluI	AGCT	4 cut(s)	239, 395, 484, 520
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	506, 663
Ama87I	CYCGRG	4 cut(s)	96, 299, 455, 525
Aor13HI	TCCGGA	1 cut(s)	571
ApeKI	GCWGC	2 cut(s)	329, 517
ApoI	RAATTY	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	217, 460, 626
AsuII	TTCGAA	2 cut(s)	39, 655
AvaI	CYCGRG	4 cut(s)	96, 299, 455, 525
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	162, 603
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	316, 529
BccI	CCATC	1 cut(s)	469
BceAI	ACGGC	1 cut(s)	341
BcgI	CGANNNNNNTGC	4 cut(s)	115, 149, 506, 540
BciT130I	CCWGG	1 cut(s)	602
BciVI	GTATCC	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	3 cut(s)	120, 330, 518
BlsI	GCNGC	3 cut(s)	121, 331, 519
Bme1390I	CCNGG	2 cut(s)	33, 602
Bme18I	GGWCC	1 cut(s)	264
BmeT110I	CYCGRG	4 cut(s)	96, 299, 455, 525
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	4 cut(s)	123, 144, 265, 315
BmrFI	CCNGG	2 cut(s)	33, 602
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	2 cut(s)	106, 487
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	2 cut(s)	162, 603
Bpu14I	TTCGAA	2 cut(s)	39, 655
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	32, 146, 524, 601
BsaWI	WCCGGW	2 cut(s)	571, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	4 cut(s)	32, 146, 524, 601
BseGI	GGATG	3 cut(s)	121, 502, 511
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	316, 529
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	397
BsiHKCI	CYCGRG	4 cut(s)	96, 299, 455, 525
BsiSI	CCGG	5 cut(s)	32, 84, 412, 572, 633
BslFI	GGGAC	2 cut(s)	277, 542
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	277, 542
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	4 cut(s)	96, 299, 455, 525
Bsp119I	TTCGAA	2 cut(s)	39, 655
Bsp1286I	GDGCHC	2 cut(s)	300, 397
Bsp13I	TCCGGA	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	406, 511, 668
BspACI	CCGC	3 cut(s)	119, 446, 515
BspCNI	CTCAG	1 cut(s)	280
BspEI	TCCGGA	1 cut(s)	571
BspLI	GGNNCC	4 cut(s)	123, 144, 265, 315
BspPI	GGATC	2 cut(s)	506, 663
BspT104I	TTCGAA	2 cut(s)	39, 655
BspT107I	GGYRCC	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	4 cut(s)	32, 146, 524, 601
BssMI	GATC	3 cut(s)	406, 511, 668
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	2 cut(s)	279, 554
BstAFI	CTTAAG	1 cut(s)	485
BstBI	TTCGAA	2 cut(s)	39, 655
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	3 cut(s)	121, 502, 511
BstKTI	GATC	3 cut(s)	409, 514, 671
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	3 cut(s)	406, 511, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	31, 600
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	316, 529
BstV2I	GAAGAC	2 cut(s)	162, 603
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
BsuI	GTATCC	1 cut(s)	622
BtsCI	GGATG	3 cut(s)	121, 502, 511
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	264
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	4 cut(s)	139, 309, 501, 639
CviJI	RGCY	7 cut(s)	143, 239, 395, 434, 460, 484, 520
CviKI_1	RGCY	7 cut(s)	143, 239, 395, 434, 460, 484, 520
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	3 cut(s)	408, 513, 670
DpnII	GATC	3 cut(s)	406, 511, 668
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	397
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	395
Eco88I	CYCGRG	4 cut(s)	96, 299, 455, 525
EcoICRI	GAGCTC	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	397
FaeI	CATG	4 cut(s)	142, 312, 504, 642
FaqI	GGGAC	2 cut(s)	277, 542
FatI	CATG	4 cut(s)	138, 308, 500, 638
Fnu4HI	GCNGC	3 cut(s)	120, 330, 518
FokI	GGATG	3 cut(s)	128, 509, 518
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	120, 330, 518
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	3 cut(s)	120, 330, 518
HapII	CCGG	5 cut(s)	32, 84, 412, 572, 633
Hin1II	CATG	4 cut(s)	142, 312, 504, 642
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	5 cut(s)	32, 84, 412, 572, 633
HphI	GGTGA	3 cut(s)	217, 460, 626
Hpy166II	GTNNAC	3 cut(s)	76, 306, 426
Hpy188I	TCNGA	2 cut(s)	115, 468
Hpy188III	TCNNGA	4 cut(s)	455, 527, 572, 623
Hpy8I	GTNNAC	3 cut(s)	76, 306, 426
HpyAV	CCTTC	7 cut(s)	172, 193, 208, 239, 487, 577, 657
HpyCH4III	ACNGT	2 cut(s)	279, 554
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	136, 332, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	142, 312, 504, 642
Kpn2I	TCCGGA	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	406, 511, 668
LmnI	GCTCC	3 cut(s)	18, 148, 400
LpnPI	CCDG	9 cut(s)	45, 97, 171, 425, 585, 587, 597, 614, 646
Lsp1109I	GCAGC	2 cut(s)	316, 529
LweI	GCATC	2 cut(s)	106, 487
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	72
MalI	GATC	3 cut(s)	408, 513, 670
MboI	GATC	3 cut(s)	406, 511, 668
MboII	GAAGA	4 cut(s)	162, 502, 587, 608
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	300, 397
MluCI	AATT	5 cut(s)	387, 542, 563, 587, 606
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	156, 196, 251, 408, 424, 436, 534, 619, 682
Mph1103I	ATGCAT	1 cut(s)	502
MroI	TCCGGA	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	3 cut(s)	251, 486, 566
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	5 cut(s)	32, 84, 412, 572, 633
MspR9I	CCNGG	2 cut(s)	33, 602
MvaI	CCWGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	406, 511, 668
NlaIII	CATG	4 cut(s)	142, 312, 504, 642
NlaIV	GGNNCC	4 cut(s)	123, 144, 265, 315
NsiI	ATGCAT	1 cut(s)	502
NspV	TTCGAA	2 cut(s)	39, 655
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	121, 331, 519
Psp124BI	GAGCTC	1 cut(s)	397
Psp1406I	AACGTT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	4 cut(s)	123, 144, 265, 315
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	668
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	3 cut(s)	251, 486, 566
SatI	GCNGC	3 cut(s)	120, 330, 518
Sau3AI	GATC	3 cut(s)	406, 511, 668
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	33, 602
SduI	GDGCHC	2 cut(s)	300, 397
SfaNI	GCATC	2 cut(s)	106, 487
SfuI	TTCGAA	2 cut(s)	39, 655
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	387, 542, 563, 587, 606
SsiI	CCGC	3 cut(s)	119, 446, 515
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	2 cut(s)	31, 600
TaaI	ACNGT	2 cut(s)	279, 554
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	39, 65, 391, 655
TaqII	GACCGA	2 cut(s)	138, 281
TasI	AATT	5 cut(s)	387, 542, 563, 587, 606
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	3 cut(s)	251, 486, 566
Tru9I	TTAA	3 cut(s)	251, 486, 566
TscAI	CASTG	1 cut(s)	559
TseI	GCWGC	2 cut(s)	329, 517
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	559
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.