Rh7AG362700

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014807
Physical Location & Seq
Forward (+)
46632624 .. 46638767
6144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG362700.1

Sequence Viewer

Length: 969 bp
ATGGAGGTCACCTCGGAAAATGTTGCTCATCGTTTTGGTGTTTCAAGGCAGGAGCAAGATCAGGCTTCAGCAGCTGCTACTACTACTGCTGGTAGATTTAAAGATGAAATTATCCCTGTGGCAACCAAGATTGTTGATCCAAAATCTGGTGGTGAGAAACCTGTTACAATCTCCGTTGATGATGGGATTCGAAACACAACATTGTCGGACCTAGCAAAGCTGAAGCCTGTGTTTAAGAAAGATGGGACCACCACTACTGGTAATTCTAGTCAAGTTAGTGATGGTGCTGGAGCTGTTCTCTTGATGAAGAGAAGTGTTGCCGACCAAAAAGGAATTCCAATTCTTGGTGTATTTAGTGGAAAGCCCCAAATCTCCAAAGTTTCGAATGCGGCACTGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGGGTTTTCTACAGCCTCTACAAACCCAAATGGCCCTGATGGGTTTTCTTGGGTGAGTCTGGCTCGGTCTATACGCCACGGTTCAGAGCAGTTCTGGTCCAATTTTGGTGACTCGGTGAAGAAGGAAACTGGGTTTGATTTGAAGGAGGTGAATGTGAAGGTGGGGGAGTATTTGGGGCAAGCTGGGGAAGGATTAAAGAGAGGTGGGACTAAGTTGGAACGGTTTAGGACCGAGTTAGTGCCCGAGTTTGTGAGTTGGAATCAGTGGGAAAGATGGAAGTATGGTGAAAATGTCACAATTGGGAGCATGGTCTTCACCATGGAAAATATCTTCAAAGTTCTCGTCCGGCCATATCTAATTGACATACTTGTTTCAATGATCTCTCATTACATCGAAGAAACAGAAGAACTTGCGACAGAAGAACTTGCGATGAATGGTTTGAGAAACAACAGGCACATTCTGGACATGATTATTGAGGAACTATTAGATAAGTCAAGGATTACTGGGTTGGTAAGTTATAAAACATACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

322

Amino Acids

35.52

Weight (kDa)

7.0

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 1 - 105 1.4e-27 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
AccB7I CCANNNNNTGG 2 cut(s) 146, 344
AciI CCGC 1 cut(s) 389
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 782
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 2 cut(s) 51, 242
AfiI CCNNNNNNNGG 2 cut(s) 146, 344
AgsI TTSAA 4 cut(s) 45, 577, 769, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 4 cut(s) 74, 220, 293, 617
AluI AGCT 4 cut(s) 74, 220, 293, 617
Alw26I GTCTC 1 cut(s) 426
AlwI GGATC 1 cut(s) 131
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 2 cut(s) 466, 782
ApeKI GCWGC 2 cut(s) 71, 74
ApoI RAATTY 1 cut(s) 333
ArsI GACNNNNNNTTYG 2 cut(s) 762, 794
AspS9I GGNCC 5 cut(s) 208, 246, 467, 531, 663
AsuHPI GGTGA 7 cut(s) 164, 499, 554, 562, 595, 731, 742
AsuII TTCGAA 2 cut(s) 190, 383
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 4 cut(s) 208, 246, 531, 663
BaeGI GKGCMC 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 739
BbvI GCAGC 2 cut(s) 61, 83
BccI CCATC 5 cut(s) 176, 236, 275, 467, 702
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 2 cut(s) 212, 267
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 3 cut(s) 72, 75, 390
BlsI GCNGC 3 cut(s) 73, 76, 391
Bme18I GGWCC 4 cut(s) 208, 246, 531, 663
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 5 cut(s) 208, 246, 467, 531, 663
BmiI GGNNCC 2 cut(s) 247, 414
BmrI ACTGGG 2 cut(s) 573, 948
BmuI ACTGGG 2 cut(s) 573, 948
BpiI GAAGAC 1 cut(s) 739
BplI GAGNNNNNCTC 5 cut(s) 28, 282, 314, 481, 513
BpmI CTGGAG 1 cut(s) 309
Bpu14I TTCGAA 2 cut(s) 190, 383
BsaJI CCNNGG 3 cut(s) 12, 511, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 344
Bse1I ACTGG 3 cut(s) 262, 568, 943
BseDI CCNNGG 3 cut(s) 12, 511, 753
BseLI CCNNNNNNNGG 2 cut(s) 146, 344
BseMII CTCAG 1 cut(s) 431
BseNI ACTGG 3 cut(s) 262, 568, 943
BseRI GAGGAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 678
BseXI GCAGC 2 cut(s) 61, 83
BseYI CCCAGC 1 cut(s) 617
BshFI GGCC 2 cut(s) 468, 784
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 1 cut(s) 781
BslFI GGGAC 2 cut(s) 259, 655
BslI CCNNNNNNNGG 2 cut(s) 146, 344
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 259, 655
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 468, 784
BsoBI CYCGRG 1 cut(s) 677
Bsp119I TTCGAA 2 cut(s) 190, 383
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 3 cut(s) 58, 136, 813
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 1 cut(s) 389
BspANI GGCC 2 cut(s) 468, 784
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 2 cut(s) 247, 414
BspPI GGATC 1 cut(s) 131
BspT104I TTCGAA 2 cut(s) 190, 383
BsrI ACTGG 3 cut(s) 262, 568, 943
BssECI CCNNGG 3 cut(s) 12, 511, 753
BssMI GATC 3 cut(s) 58, 136, 813
BssT1I CCWWGG 1 cut(s) 753
Bst4CI ACNGT 2 cut(s) 515, 657
Bst6I CTCTTC 1 cut(s) 302
BstBI TTCGAA 2 cut(s) 190, 383
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 2 cut(s) 417, 645
BstDSI CCRYGG 2 cut(s) 511, 753
BstEII GGTNACC 1 cut(s) 7
BstKTI GATC 3 cut(s) 61, 139, 816
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 3 cut(s) 58, 136, 813
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstPI GGTNACC 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 678
BstV1I GCAGC 2 cut(s) 61, 83
BstV2I GAAGAC 1 cut(s) 739
BsuRI GGCC 2 cut(s) 468, 784
BtgI CCRYGG 2 cut(s) 511, 753
BtgZI GCGATG 1 cut(s) 878
BtsIMutI CAGTG 2 cut(s) 392, 704
Cac8I GCNNGC 1 cut(s) 615
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 5 cut(s) 208, 246, 467, 531, 663
CviAII CATG 4 cut(s) 409, 742, 754, 901
DdeI CTNAG 2 cut(s) 417, 645
DpnI GATC 3 cut(s) 60, 138, 815
DpnII GATC 3 cut(s) 58, 136, 813
DraI TTTAAA 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 782
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 753
Eco47I GGWCC 4 cut(s) 208, 246, 531, 663
Eco57I CTGAAG 2 cut(s) 51, 242
Eco88I CYCGRG 1 cut(s) 677
Eco91I GGTNACC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 753
ErhI CCWWGG 1 cut(s) 753
FaeI CATG 4 cut(s) 412, 745, 757, 904
FaqI GGGAC 2 cut(s) 259, 655
FatI CATG 4 cut(s) 408, 741, 753, 900
Fnu4HI GCNGC 3 cut(s) 72, 75, 390
Fsp4HI GCNGC 3 cut(s) 72, 75, 390
FspBI CTAG 2 cut(s) 212, 267
GluI GCNGC 3 cut(s) 72, 75, 390
GsaI CCCAGC 1 cut(s) 621
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 468, 784
HapII CCGG 1 cut(s) 781
Hin1II CATG 4 cut(s) 412, 745, 757, 904
HinfI GANTC 4 cut(s) 187, 490, 545, 694
HpaII CCGG 1 cut(s) 781
HphI GGTGA 7 cut(s) 164, 499, 554, 562, 595, 731, 742
Hpy188I TCNGA 3 cut(s) 16, 208, 520
Hpy188III TCNNGA 2 cut(s) 301, 896
HpyAV CCTTC 4 cut(s) 550, 571, 586, 617
HpyCH4III ACNGT 2 cut(s) 515, 657
HpyCH4V TGCA 1 cut(s) 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 417, 645
Hsp92II CATG 4 cut(s) 412, 745, 757, 904
Kzo9I GATC 3 cut(s) 58, 136, 813
LmnI GCTCC 4 cut(s) 52, 290, 418, 738
Lsp1109I GCAGC 2 cut(s) 61, 83
MaeI CTAG 2 cut(s) 212, 267
MaeIII GTNAC 4 cut(s) 7, 163, 542, 727
MalI GATC 3 cut(s) 60, 138, 815
MboI GATC 3 cut(s) 58, 136, 813
MboII GAAGA 7 cut(s) 319, 565, 739, 757, 842, 851, 866
MfeI CAATTG 1 cut(s) 732
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 7 cut(s) 108, 262, 333, 339, 535, 732, 792
MlyI GAGTC 2 cut(s) 499, 539
MmeI TCCRAC 3 cut(s) 186, 630, 671
MnlI CCTC 6 cut(s) 22, 426, 460, 574, 629, 904
MseI TTAA 3 cut(s) 99, 234, 629
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 781
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 71
NcoI CCATGG 1 cut(s) 753
NdeII GATC 3 cut(s) 58, 136, 813
NlaIII CATG 4 cut(s) 412, 745, 757, 904
NlaIV GGNNCC 2 cut(s) 247, 414
NmuCI GTSAC 3 cut(s) 7, 542, 727
NspV TTCGAA 2 cut(s) 190, 383
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 2 cut(s) 187, 694
PflMI CCANNNNNTGG 2 cut(s) 146, 344
PkrI GCNGC 3 cut(s) 73, 76, 391
PleI GAGTC 2 cut(s) 498, 539
PpsI GAGTC 2 cut(s) 498, 539
PsiI TTATAA 1 cut(s) 954
PspEI GGTNACC 1 cut(s) 7
PspFI CCCAGC 1 cut(s) 617
PspN4I GGNNCC 2 cut(s) 247, 414
PspPI GGNCC 5 cut(s) 208, 246, 467, 531, 663
PstNI CAGNNNCTG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 3 cut(s) 99, 234, 629
SatI GCNGC 3 cut(s) 72, 75, 390
Sau3AI GATC 3 cut(s) 58, 136, 813
Sau96I GGNCC 5 cut(s) 208, 246, 467, 531, 663
SchI GAGTC 2 cut(s) 499, 539
SduI GDGCHC 1 cut(s) 678
SfcI CTRYAG 1 cut(s) 444
SfuI TTCGAA 2 cut(s) 190, 383
SinI GGWCC 4 cut(s) 208, 246, 531, 663
Sse9I AATT 7 cut(s) 108, 262, 333, 339, 535, 732, 792
SsiI CCGC 1 cut(s) 389
SspMI CTAG 2 cut(s) 212, 267
StyI CCWWGG 1 cut(s) 753
TaaI ACNGT 2 cut(s) 515, 657
TaqI TCGA 3 cut(s) 190, 383, 828
TaqII GACCGA 2 cut(s) 489, 680
TasI AATT 7 cut(s) 108, 262, 333, 339, 535, 732, 792
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 2 cut(s) 187, 694
Tru1I TTAA 3 cut(s) 99, 234, 629
Tru9I TTAA 3 cut(s) 99, 234, 629
TscAI CASTG 2 cut(s) 399, 704
TseFI GTSAC 3 cut(s) 7, 542, 727
TseI GCWGC 2 cut(s) 71, 74
Tsp45I GTSAC 3 cut(s) 7, 542, 727
TspDTI ATGAA 3 cut(s) 120, 320, 881
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 2 cut(s) 399, 704
Van91I CCANNNNNTGG 2 cut(s) 146, 344
VpaK11BI GGWCC 4 cut(s) 208, 246, 531, 663
XapI RAATTY 1 cut(s) 333
XspI CTAG 2 cut(s) 212, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.