Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Reverse (-)

17841723 .. 17843672

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGATTTCACCTTCTCTCCGGTGAAACCTGCATCCCTCGGATCCCCAATTGTCAACTCCTCAACCGATTCACCACTCCCTCGTGTCAAAGAGCTTGCCGAGTTTGTCCGAGATTCCGATCAAGTACATAGCATTGAAGGAAACTCAATAAACGTTTACAATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCGAATGCAGCACCGAAGCAAATGCACATGGCTCCTCGTCTCACCTATCTAATGGGTCTTCTACAGGTGAAGAAGGAAACTGGGTTTGATTTGAAGGAGGTGAATGTGAAGGTGGGGGAGTATTTGGGGCAAGCTGGGGAAGGATTAAAGAGAGGTGGGACTAAGTTGGAACGGTTTAGGACCGAGTTAGTGCCCAAGTTTGTGAGTTGGAATCGATGGGTGGGAAAGATGGAAGGTAAAGTTCTTGTATTTAGTTTTAGCTTCTCATTTTGTTGTTGCAATGTGTTGGAAGATAATGGAAGTTATTACAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

169

Amino Acids

18.75

Weight (kDa)

8.96

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	36, 49
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	137, 286
AluBI	AGCT	4 cut(s)	94, 326, 453, 506
AluI	AGCT	4 cut(s)	94, 326, 453, 506
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	36, 49
ApeKI	GCWGC	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	372
AsuHPI	GGTGA	5 cut(s)	34, 63, 226, 271, 304
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	372
BaeGI	GKGCMC	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	41
BauI	CACGAG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	2 cut(s)	402, 415
BcgI	CGANNNNNNTGC	2 cut(s)	196, 230
BcoDI	GTCTC	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	1 cut(s)	372
BmiI	GGNNCC	2 cut(s)	43, 225
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	165, 277
Bse3DI	GCAATG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	117
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	32
BseJI	GATNNNNATC	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	478
BseNI	ACTGG	2 cut(s)	165, 277
BseRI	GAGGAG	2 cut(s)	49, 216
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	326
BshVI	ATCGAT	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	236
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	41, 118
BspDI	ATCGAT	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	43, 225
BspMI	ACCTGC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	36, 49
BspT104I	TTCGAA	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	165, 277
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	41, 118
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	96, 324
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	44, 121
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	41, 118
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	406
BsuTUI	ATCGAT	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	96, 324
Cfr13I	GGNCC	1 cut(s)	372
ClaI	ATCGAT	1 cut(s)	406
Csp6I	GTAC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	5 cut(s)	94, 224, 326, 453, 506
CviKI_1	RGCY	5 cut(s)	94, 224, 326, 453, 506
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	43, 120
DpnII	GATC	2 cut(s)	41, 118
Eco47I	GGWCC	1 cut(s)	372
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	1 cut(s)	223
FaiI	YATR	2 cut(s)	129, 221
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	330
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	3 cut(s)	68, 113, 403
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	5 cut(s)	34, 63, 226, 271, 304
Hpy166II	GTNNAC	2 cut(s)	55, 157
Hpy188I	TCNGA	3 cut(s)	41, 110, 118
Hpy8I	GTNNAC	2 cut(s)	55, 157
HpyAV	CCTTC	7 cut(s)	22, 131, 259, 280, 295, 326, 419
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	32, 200, 217, 471
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	41, 118
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	6 cut(s)	33, 42, 178, 242, 258, 312
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	41
MaeII	ACGT	1 cut(s)	153
MalI	GATC	2 cut(s)	43, 120
MboI	GATC	2 cut(s)	41, 118
MboII	GAAGA	3 cut(s)	242, 274, 494
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	1 cut(s)	48
MmeI	TCCRAC	3 cut(s)	339, 380, 459
MnlI	CCTC	6 cut(s)	47, 70, 90, 237, 283, 338
MseI	TTAA	1 cut(s)	338
MspI	CCGG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	202
NdeII	GATC	2 cut(s)	41, 118
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	43, 225
NmeAIII	GCCGAG	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	194
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	68, 113, 403
PkrI	GCNGC	1 cut(s)	202
Psp1406I	AACGTT	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	43, 225
PspPI	GGNCC	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	41, 118
Sau96I	GGNCC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	372
Sse9I	AATT	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	194, 406
TaqII	GACCGA	1 cut(s)	389
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	3 cut(s)	68, 113, 403
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	200
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.