Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Reverse (-)

30846735 .. 30847476

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1209600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGACCTTCAAATCACATACAAATCGAACCCACTTCTCCTTTCTTTCACCCCAATCAGCCACACGTCTCCAAGACCCCTACTTTTCAACCTACCCACAAAGCACAGACCCAAAATTTCCCGGCAAAGACCGGTTTTTCGTGTCATGGCTTCTGCAAATTCAAATAGGTCTGATGGGTTTTCTTGGCTGAGTCTGACTCGGTCCATACGCCGCGGTTCCGAGCGGTTCTGGTTGGATTTTGGTGAGTGGGTGAAGGAAACTGGGTTTGATTTGAAGGAAGTTAATGTGATGGTAGGTGAGTATTTGGAGCTAGTTGGGGACGGGTTAAAGAAAGGTGGGACTGAGTTGGAGCGGTTTAGGACCGAGTTGCTGCCGGAGTTCGTCAGCTGGAATCAGTGGGAACGTTGGAAGATTATTGATAGCAATTCAGAGGAAATGTTAGCTTTTTTATCAGCACACTCTTCAAGCAACATACACAATGGCGTTCATATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

166

Amino Acids

19.11

Weight (kDa)

9.05

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	223, 352
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	211, 213, 223, 352
AclI	AACGTT	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	114, 157
AflIII	ACRYGT	1 cut(s)	63
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	5 cut(s)	11, 88, 162, 274, 465
AjiI	CACGTC	1 cut(s)	66
AluBI	AGCT	3 cut(s)	310, 387, 443
AluI	AGCT	3 cut(s)	310, 387, 443
Alw26I	GTCTC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	2 cut(s)	114, 157
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AsiGI	ACCGGT	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	4, 201, 360
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	4 cut(s)	40, 254, 262, 308
AvaII	GGWCC	3 cut(s)	4, 201, 360
BbvI	GCAGC	1 cut(s)	357
BccI	CCATC	2 cut(s)	167, 283
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	2 cut(s)	211, 371
BlsI	GCNGC	2 cut(s)	212, 372
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	3 cut(s)	4, 201, 360
BmgBI	CACGTC	1 cut(s)	66
BmgT120I	GGNCC	3 cut(s)	4, 201, 360
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpuMI	CCSGG	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	265
BseDI	CCNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	179, 333
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	130
BsiSI	CCGG	3 cut(s)	121, 131, 374
BslFI	GGGAC	2 cut(s)	332, 352
BsmAI	GTCTC	1 cut(s)	72
BsmBI	CGTCTC	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	332, 352
BspACI	CCGC	4 cut(s)	211, 213, 223, 352
BspCNI	CTCAG	2 cut(s)	180, 334
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	217
BsrBI	CCGCTC	2 cut(s)	223, 352
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	466
BstDEI	CTNAG	2 cut(s)	188, 342
BstDSI	CCRYGG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	119
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	4, 201, 360
Cfr42I	CCGCGG	1 cut(s)	214
CspAI	ACCGGT	1 cut(s)	130
CviAII	CATG	2 cut(s)	145, 495
CviJI	RGCY	6 cut(s)	60, 149, 187, 310, 387, 443
CviKI_1	RGCY	6 cut(s)	60, 149, 187, 310, 387, 443
DdeI	CTNAG	2 cut(s)	188, 342
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Eco47I	GGWCC	3 cut(s)	4, 201, 360
Esp3I	CGTCTC	1 cut(s)	72
FaeI	CATG	2 cut(s)	148, 498
FaiI	YATR	7 cut(s)	19, 146, 206, 473, 489, 491, 496
FaqI	GGGAC	2 cut(s)	332, 352
FatI	CATG	2 cut(s)	144, 494
FauNDI	CATATG	1 cut(s)	489
Fnu4HI	GCNGC	2 cut(s)	211, 371
Fsp4HI	GCNGC	2 cut(s)	211, 371
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	211, 371
HapII	CCGG	3 cut(s)	121, 131, 374
Hin1II	CATG	2 cut(s)	148, 498
HinfI	GANTC	3 cut(s)	190, 196, 391
HpaII	CCGG	3 cut(s)	121, 131, 374
HphI	GGTGA	4 cut(s)	40, 254, 262, 308
Hpy188I	TCNGA	4 cut(s)	172, 195, 220, 430
HpyAV	CCTTC	3 cut(s)	17, 247, 268
HpyCH4IV	ACGT	2 cut(s)	65, 403
HpyCH4V	TGCA	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	188, 342
HpySE526I	ACGT	2 cut(s)	65, 403
Hsp92II	CATG	2 cut(s)	148, 498
KspI	CCGCGG	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	307, 349
LpnPI	CCDG	6 cut(s)	134, 144, 214, 246, 373, 387
Lsp1109I	GCAGC	1 cut(s)	357
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	65, 403
MbiI	CCGCTC	2 cut(s)	223, 352
MboII	GAAGA	2 cut(s)	421, 453
MluCI	AATT	3 cut(s)	114, 157, 424
MlyI	GAGTC	2 cut(s)	190, 199
MmeI	TCCRAC	3 cut(s)	213, 327, 386
MnlI	CCTC	1 cut(s)	424
MseI	TTAA	2 cut(s)	282, 326
MspA1I	CMGCKG	2 cut(s)	213, 387
MspI	CCGG	3 cut(s)	121, 131, 374
MspR9I	CCNGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	121
NdeI	CATATG	1 cut(s)	489
NlaIII	CATG	2 cut(s)	148, 498
NlaIV	GGNNCC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	391
PflFI	GACNNNGTC	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	212, 372
PleI	GAGTC	2 cut(s)	190, 198
PpsI	GAGTC	2 cut(s)	190, 198
Psp1406I	AACGTT	1 cut(s)	403
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	4, 201, 360
PsyI	GACNNNGTC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	387
SacII	CCGCGG	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	282, 326
SatI	GCNGC	2 cut(s)	211, 371
Sau96I	GGNCC	3 cut(s)	4, 201, 360
SchI	GAGTC	2 cut(s)	190, 199
ScrFI	CCNGG	1 cut(s)	121
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	3 cut(s)	4, 201, 360
Sse9I	AATT	3 cut(s)	114, 157, 424
SsiI	CCGC	4 cut(s)	211, 213, 223, 352
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	119
TaiI	ACGT	2 cut(s)	68, 406
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	2 cut(s)	189, 377
TasI	AATT	3 cut(s)	114, 157, 424
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	2 cut(s)	282, 326
Tru9I	TTAA	2 cut(s)	282, 326
TscAI	CASTG	1 cut(s)	401
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	401
Tth111I	GACNNNGTC	1 cut(s)	199
VpaK11BI	GGWCC	3 cut(s)	4, 201, 360
XapI	RAATTY	2 cut(s)	114, 157
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.