Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Forward (+)

27032183 .. 27033954

Gene Structure 1772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG287700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCGGATGCGGCACCGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGGGTCTTCTACAGAAGGAAACTGGGTTTGATTTGAAGGAGGTGAATGTGAAGGTGGGGGAGTATTTGGGGCAAGCTGGGGAAGGATTAAAGAGAGGTGGGACTGAGTTGGAACGGTTTAGGACCGAGTTAGTGCCCGAGTTTGTAAGTGGGAATCAGTGGGAAAGATGGAAGGATATCAAGACATGGGAACCTAAAAGAGTTGCTGCATTGGTTTTCTATGTTTTTATTGCCGCAGTTTCGTGTCAAAGAATATATGTAGCAATTCGAGCTCCTATCCAAGATCGCCAGAGGAAAGAGTTGACAGAGGCTTATATGGAGGCAGTGATTCCTGAGCCATCTCCGAGTAATGTTAGAAAGCTTAAGAAGAGTATGTGGAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

156

Amino Acids

18.23

Weight (kDa)

9.84

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	2 cut(s)	40, 318
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	3 cut(s)	161, 356, 445
AluI	AGCT	3 cut(s)	161, 356, 445
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	246, 430
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BcoDI	GTCTC	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	3 cut(s)	41, 291, 318
BlsI	GCNGC	3 cut(s)	42, 292, 319
Bme18I	GGWCC	1 cut(s)	207
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	3 cut(s)	44, 65, 276
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	27
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	5, 112
BseGI	GGATG	1 cut(s)	42
BseMII	CTCAG	3 cut(s)	82, 180, 408
BseNI	ACTGG	2 cut(s)	5, 112
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	277
BseYI	CCCAGC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	222, 358
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	40, 318
BspCNI	CTCAG	3 cut(s)	81, 181, 409
BspLI	GGNNCC	3 cut(s)	44, 65, 276
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	5, 112
BssMI	GATC	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	446
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	3 cut(s)	68, 189, 417
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	12, 248, 414
Cac8I	GCNNGC	1 cut(s)	159
Cfr13I	GGNCC	1 cut(s)	207
CviAII	CATG	2 cut(s)	60, 270
CviJI	RGCY	6 cut(s)	64, 161, 356, 395, 421, 445
CviKI_1	RGCY	6 cut(s)	64, 161, 356, 395, 421, 445
DdeI	CTNAG	3 cut(s)	68, 189, 417
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	356
EcoRV	GATATC	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	358
FaeI	CATG	2 cut(s)	63, 273
FaiI	YATR	8 cut(s)	61, 271, 306, 340, 342, 399, 401, 458
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	2 cut(s)	59, 269
Fnu4HI	GCNGC	3 cut(s)	41, 291, 318
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	3 cut(s)	41, 291, 318
GluI	GCNGC	3 cut(s)	41, 291, 318
GsaI	CCCAGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	63, 273
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	2 cut(s)	238, 412
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	36, 429
Hpy188III	TCNNGA	2 cut(s)	265, 416
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	5 cut(s)	94, 115, 130, 161, 250
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	57, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	68, 189, 417
Hsp92II	CATG	2 cut(s)	63, 273
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	2 cut(s)	69, 361
LpnPI	CCDG	5 cut(s)	18, 93, 147, 386, 429
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	1 cut(s)	27
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	83, 463
MhlI	GDGCHC	2 cut(s)	222, 358
MluCI	AATT	1 cut(s)	348
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	77, 118, 173, 369, 385, 397, 456
MseI	TTAA	2 cut(s)	173, 447
MspCI	CTTAAG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	2 cut(s)	63, 273
NlaIV	GGNNCC	3 cut(s)	44, 65, 276
PfeI	GAWTC	2 cut(s)	238, 412
PkrI	GCNGC	3 cut(s)	42, 292, 319
Psp124BI	GAGCTC	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	44, 65, 276
PspPI	GGNCC	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	173, 447
SatI	GCNGC	3 cut(s)	41, 291, 318
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	222, 358
SetI	ASST	7 cut(s)	129, 141, 163, 184, 280, 358, 447
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	2 cut(s)	40, 318
SstI	GAGCTC	1 cut(s)	358
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	352
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	348
TauI	GCSGC	2 cut(s)	43, 320
TfiI	GAWTC	2 cut(s)	238, 412
Tru1I	TTAA	2 cut(s)	173, 447
Tru9I	TTAA	2 cut(s)	173, 447
TscAI	CASTG	3 cut(s)	12, 248, 414
TseI	GCWGC	1 cut(s)	290
TspRI	CASTG	3 cut(s)	12, 248, 414
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.