Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014807

Physical Location & Seq

Genomic Coordinates Forward (+)

62469093 .. 62480114

Gene Structure 11022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG467600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCCAGTGGAAACCCCCAAATCTCCAAAGTTTCGGATGCGGCACCGAAACAAATGCACATGGCTCCTCAGTCTCGCCTATCTAATGGGTCTTCTACAGGATATCAAGACATGGGAACCTAAAAGAGTTGCTGCATTGGTTTTGTATGTTTTTATTGCCATAGTTTCGTGTCAAAGAATATATGTAGCAATTCGAGCTCCTATCCAAGATCGCCAGAGGAAAGAGTTGACAGAGGCTTATATGGAGGCAGTGATTCCTGAGCCATCTCCGAGTAATGTTAGAAAGCTTAAGAAGAGTATGTGGAGGAAGACGACGCCCAAAGGCCTGAAAATGAAGAAGTTTGTTGAAGGACCTGATGGAACACTTGTCCATGATAGTTCTTATGTGGGAGAGGATGCATGGGATGATGATCCGCAGCTGCCTCAGGACAATGTAAAACAATTTATTGACAGTGATATAAAATTAAATCCAGAAGAACAGAAGGAATTGAAAGAAGACCTGGGAATTTCTGCATTACAGATTAGCTTGGAGAGAGCTTGGACAACAACTTCAACTTCAACTGTTATTGGGGAGGTTGCAGGGAGAGACAGCGGCAACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

200

Amino Acids

22.76

Weight (kDa)

8.77

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014807)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209500.v1.1 MD10G1209600.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060561
rosa_roxburghii	Rroxscaffold_1G00021830 Rroxscaffold_2G00110380 Rroxscaffold_3G00232160 Rroxscaffold_4G00310800 Rroxscaffold_7G00172290
rosa_samantha	Rh5CG431800 Rh6AG098400 Rh6BG090100 Rh6CG087000 Rh6DG081200 Rh7AG362700 Rh7BG287700 Rh7CG467600 Rh7DG450000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	3 cut(s)	40, 413, 591
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	314
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	347, 490, 552, 558
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	6 cut(s)	197, 286, 418, 525, 536, 600
AluI	AGCT	6 cut(s)	197, 286, 418, 525, 536, 600
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	77, 579
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	131, 415, 418
ApoI	RAATTY	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	3 cut(s)	83, 314, 501
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	3 cut(s)	118, 405, 427
BccI	CCATC	2 cut(s)	271, 350
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	2 cut(s)	77, 579
BfaI	CTAG	1 cut(s)	601
BfmI	CTRYAG	1 cut(s)	95
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	5 cut(s)	41, 132, 416, 419, 592
BlsI	GCNGC	5 cut(s)	42, 133, 417, 420, 593
Bme1390I	CCNGG	1 cut(s)	500
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	3 cut(s)	44, 65, 117
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	27, 385
BpiI	GAAGAC	3 cut(s)	83, 314, 501
Bpu10I	CCTNAGC	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	5
Bse21I	CCTNAGG	1 cut(s)	423
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	3 cut(s)	42, 400, 409
BseJI	GATNNNNATC	1 cut(s)	408
BseMII	CTCAG	3 cut(s)	82, 249, 437
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	118, 405, 427
BshFI	GGCC	1 cut(s)	324
BshNI	GGYRCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	77, 579
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	208, 409
BspACI	CCGC	3 cut(s)	40, 413, 591
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	3 cut(s)	81, 250, 436
BspLI	GGNNCC	3 cut(s)	44, 65, 117
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	499
BssMI	GATC	2 cut(s)	208, 409
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	452, 562
Bst6I	CTCTTC	1 cut(s)	287
BstACI	GRCGYC	1 cut(s)	314
BstAFI	CTTAAG	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	68, 258, 423
BstF5I	GGATG	3 cut(s)	42, 400, 409
BstKTI	GATC	2 cut(s)	211, 412
BstMAI	GTCTC	2 cut(s)	77, 579
BstMBI	GATC	2 cut(s)	208, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 597
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	118, 405, 427
BstV2I	GAAGAC	3 cut(s)	83, 314, 501
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	42, 400, 409
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	3 cut(s)	12, 255, 457
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	322
CviAII	CATG	4 cut(s)	60, 111, 371, 399
DdeI	CTNAG	3 cut(s)	68, 258, 423
DpnI	GATC	2 cut(s)	210, 411
DpnII	GATC	2 cut(s)	208, 409
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	423
EcoICRI	GAGCTC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	4 cut(s)	63, 114, 374, 402
FatI	CATG	4 cut(s)	59, 110, 370, 398
Fnu4HI	GCNGC	5 cut(s)	41, 132, 416, 419, 592
FokI	GGATG	3 cut(s)	49, 407, 416
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	5 cut(s)	41, 132, 416, 419, 592
FspBI	CTAG	1 cut(s)	601
GluI	GCNGC	5 cut(s)	41, 132, 416, 419, 592
HaeIII	GGCC	1 cut(s)	324
HgaI	GACGC	1 cut(s)	322
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	4 cut(s)	63, 114, 374, 402
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	36, 270
Hpy188III	TCNNGA	4 cut(s)	106, 257, 425, 470
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	341, 475
HpyCH4III	ACNGT	2 cut(s)	452, 562
HpyCH4V	TGCA	5 cut(s)	57, 134, 398, 512, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 597
HpyF3I	CTNAG	3 cut(s)	68, 258, 423
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	63, 114, 374, 402
Kzo9I	GATC	2 cut(s)	208, 409
LmnI	GCTCC	2 cut(s)	69, 202
Lsp1109I	GCAGC	3 cut(s)	118, 405, 427
LweI	GCATC	2 cut(s)	27, 385
MaeI	CTAG	1 cut(s)	601
MalI	GATC	2 cut(s)	210, 411
MboI	GATC	2 cut(s)	208, 409
MboII	GAAGA	6 cut(s)	83, 304, 319, 346, 485, 506
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	5 cut(s)	189, 440, 461, 485, 504
MnlI	CCTC	8 cut(s)	77, 210, 226, 238, 297, 385, 432, 565
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	2 cut(s)	288, 464
MspA1I	CMGCKG	2 cut(s)	418, 591
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	2 cut(s)	194, 597
NdeII	GATC	2 cut(s)	208, 409
NlaIII	CATG	4 cut(s)	63, 114, 374, 402
NlaIV	GGNNCC	3 cut(s)	44, 65, 117
NsiI	ATGCAT	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	42, 133, 417, 420, 593
PpuMI	RGGWCCY	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	3 cut(s)	44, 65, 117
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	288, 464
SatI	GCNGC	5 cut(s)	41, 132, 416, 419, 592
Sau3AI	GATC	2 cut(s)	208, 409
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	27, 385
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	5 cut(s)	189, 440, 461, 485, 504
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	3 cut(s)	40, 413, 591
SspMI	CTAG	1 cut(s)	601
SstI	GAGCTC	1 cut(s)	199
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	452, 562
TaqI	TCGA	1 cut(s)	193
TasI	AATT	5 cut(s)	189, 440, 461, 485, 504
TauI	GCSGC	2 cut(s)	43, 594
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	288, 464
Tru9I	TTAA	2 cut(s)	288, 464
TscAI	CASTG	3 cut(s)	12, 255, 457
TseI	GCWGC	3 cut(s)	131, 415, 418
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	3 cut(s)	12, 255, 457
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	504
XspI	CTAG	1 cut(s)	601
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.